Computational Proteomics (Dagstuhl Seminar 25351)

Gundry, Rebekah; Palmblad, Magnus; Wilhelm, Mathias

doi:10.4230/DagRep.15.8.46

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Computational Proteomics (Dagstuhl Seminar 25351)

Authors Rebekah Gundry, Magnus Palmblad, Mathias Wilhelm and all authors of the abstracts in this report

Part of: Issue: Dagstuhl Reports, Volume 15, Issue 8
Part of: Volume: Dagstuhl Reports, Volume 15
Part of: Journal: Dagstuhl Reports (DagRep)
License: Creative Commons Attribution 4.0 International license
Publication Date: 2026-04-30

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DagRep.15.8.46.pdf

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Document Identifiers

DOI: 10.4230/DagRep.15.8.46
URN: urn:nbn:de:0030-drops-257737

Subject Classification

ACM Subject Classification

Theory of computation → Theory and algorithms for application domains
Computing methodologies → Machine learning
Applied computing → Life and medical sciences

Keywords

proteomics
glycomics
glycoproteomics
machine learning
mass spectrometry

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Abstract

In 2025 the Dagstuhl Seminar "Computational Proteomics" (25351), part of a series of Dagstuhl Seminars with the same name, brought together experts from proteomics, glycomics and machine learning to address key challenges in the field. Discussions emphasized the need for scalable and interoperable data infrastructures, a new initiative to generate large, AI-ready proteomics datasets, and community standards for reproducible and interpretable machine learning and harmonized glycomics workflows. Participants identified several barriers in clinical translation, multi-omics integration, and quantitative glyco-proteomics, highlighting limited data interoperability, heterogeneous experimental designs, and insufficient statistical and reporting frameworks. The seminar concluded with concrete action plans toward new standards, best practices, and collaborative initiatives to advance reproducible, sustainable and clinically relevant proteomics.

Cite As Get BibTex

Rebekah Gundry, Magnus Palmblad, and Mathias Wilhelm. Computational Proteomics (Dagstuhl Seminar 25351). In Dagstuhl Reports, Volume 15, Issue 8, pp. 46-61, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026) https://doi.org/10.4230/DagRep.15.8.46

Author Details

Rebekah Gundry

University of Nebraska - Omaha, US

Magnus Palmblad

Leiden University Medical Center, NL

Mathias Wilhelm

TU München - Freising, DE

and all authors of the abstracts in this report

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