<h2>LIPIcs, Volume 242, WABI 2022</h2>
<ul>
<li>
<span class="authors">Christina Boucher and Sven Rahmann</span>
<span class="title">LIPIcs, Volume 242, WABI 2022, Complete Volume</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022">10.4230/LIPIcs.WABI.2022</a>
</li>
<li>
<span class="authors">Christina Boucher and Sven Rahmann</span>
<span class="title">Front Matter, Table of Contents, Preface, Conference Organization</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.0">10.4230/LIPIcs.WABI.2022.0</a>
</li>
<li>
<span class="authors">Leena Salmela</span>
<span class="title">Efficient Solutions to Biological Problems Using de Bruijn Graphs (Invited Talk)</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.1">10.4230/LIPIcs.WABI.2022.1</a>
</li>
<li>
<span class="authors">Sebastian Schmidt and Jarno N. Alanko</span>
<span class="title">Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.2">10.4230/LIPIcs.WABI.2022.2</a>
</li>
<li>
<span class="authors">Alitzel López Sánchez and Manuel Lafond</span>
<span class="title">Predicting Horizontal Gene Transfers with Perfect Transfer Networks</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.3">10.4230/LIPIcs.WABI.2022.3</a>
</li>
<li>
<span class="authors">Ahsan Sanaullah, Degui Zhi, and Shaoije Zhang</span>
<span class="title">Haplotype Threading Using the Positional Burrows-Wheeler Transform</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.4">10.4230/LIPIcs.WABI.2022.4</a>
</li>
<li>
<span class="authors">Mathieu Gascon and Nadia El-Mabrouk</span>
<span class="title">Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.5">10.4230/LIPIcs.WABI.2022.5</a>
</li>
<li>
<span class="authors">Konstantinn Bonnet, Tobias Marschall, and Daniel Doerr¹</span>
<span class="title">Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.6">10.4230/LIPIcs.WABI.2022.6</a>
</li>
<li>
<span class="authors">Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Laurent Bulteau, and Yann Ponty</span>
<span class="title">Automated Design of Dynamic Programming Schemes for RNA Folding with Pseudoknots</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.7">10.4230/LIPIcs.WABI.2022.7</a>
</li>
<li>
<span class="authors">Baqiao Liu and Tandy Warnow</span>
<span class="title">Fast and Accurate Species Trees from Weighted Internode Distances</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.8">10.4230/LIPIcs.WABI.2022.8</a>
</li>
<li>
<span class="authors">Giulio Ermanno Pibiri</span>
<span class="title">On Weighted k-mer Dictionaries</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.9">10.4230/LIPIcs.WABI.2022.9</a>
</li>
<li>
<span class="authors">Yoshihiko Suzuki and Gene Myers</span>
<span class="title">Accurate k-mer Classification Using Read Profiles</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.10">10.4230/LIPIcs.WABI.2022.10</a>
</li>
<li>
<span class="authors">Eden Ozery, Meirav Zehavi, and Michal Ziv-Ukelson</span>
<span class="title">New Algorithms for Structure Informed Genome Rearrangement</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.11">10.4230/LIPIcs.WABI.2022.11</a>
</li>
<li>
<span class="authors">Jens Zentgraf and Sven Rahmann</span>
<span class="title">Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.12">10.4230/LIPIcs.WABI.2022.12</a>
</li>
<li>
<span class="authors">Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, and Jens Stoye</span>
<span class="title">A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.13">10.4230/LIPIcs.WABI.2022.13</a>
</li>
<li>
<span class="authors">Yoshihiro Shibuya, Djamal Belazzougui, and Gregory Kucherov</span>
<span class="title">Efficient Reconciliation of Genomic Datasets of High Similarity</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.14">10.4230/LIPIcs.WABI.2022.14</a>
</li>
<li>
<span class="authors">Wei Wei and David Koslicki</span>
<span class="title">WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.15">10.4230/LIPIcs.WABI.2022.15</a>
</li>
<li>
<span class="authors">Giulia Bernardini, Leo van Iersel, Esther Julien, and Leen Stougie</span>
<span class="title">Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.16">10.4230/LIPIcs.WABI.2022.16</a>
</li>
<li>
<span class="authors">Daniel Gibney, Sharma V. Thankachan, and Srinivas Aluru</span>
<span class="title">Feasibility of Flow Decomposition with Subpath Constraints in Linear Time</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.17">10.4230/LIPIcs.WABI.2022.17</a>
</li>
<li>
<span class="authors">Adrián Goga and Andrej Baláž</span>
<span class="title">Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.18">10.4230/LIPIcs.WABI.2022.18</a>
</li>
<li>
<span class="authors">Taher Mun, Naga Sai Kavya Vaddadi, and Ben Langmead</span>
<span class="title">Pangenomic Genotyping with the Marker Array</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.19">10.4230/LIPIcs.WABI.2022.19</a>
</li>
<li>
<span class="authors">Zsuzsanna Lipták, Francesco Masillo, and Simon J. Puglisi</span>
<span class="title">Suffix Sorting via Matching Statistics</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.20">10.4230/LIPIcs.WABI.2022.20</a>
</li>
<li>
<span class="authors">Pijus Simonaitis and Benjamin J. Raphael</span>
<span class="title">A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.21">10.4230/LIPIcs.WABI.2022.21</a>
</li>
<li>
<span class="authors">Ke Chen and Mingfu Shao</span>
<span class="title">Locality-Sensitive Bucketing Functions for the Edit Distance</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.22">10.4230/LIPIcs.WABI.2022.22</a>
</li>
<li>
<span class="authors">Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, and Lorenzo Tattini</span>
<span class="title">phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.23">10.4230/LIPIcs.WABI.2022.23</a>
</li>
<li>
<span class="authors">Diego P. Rubert and Marília D. V. Braga</span>
<span class="title">Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.24">10.4230/LIPIcs.WABI.2022.24</a>
</li>
<li>
<span class="authors">Clément Agret, Bastien Cazaux, and Antoine Limasset</span>
<span class="title">Toward Optimal Fingerprint Indexing for Large Scale Genomics</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2022.25">10.4230/LIPIcs.WABI.2022.25</a>
</li>
</ul>
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