<h2>LIPIcs, Volume 273, WABI 2023</h2> <ul> <li> <span class="authors">Djamal Belazzougui and Aïda Ouangraoua</span> <span class="title">LIPIcs, Volume 273, WABI 2023, Complete Volume</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023">10.4230/LIPIcs.WABI.2023</a> </li> <li> <span class="authors">Djamal Belazzougui and Aïda Ouangraoua</span> <span class="title">Front Matter, Table of Contents, Preface, Conference Organization</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.0">10.4230/LIPIcs.WABI.2023.0</a> </li> <li> <span class="authors">Teresa M. Przytycka</span> <span class="title">Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk)</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.1">10.4230/LIPIcs.WABI.2023.1</a> </li> <li> <span class="authors">Chengze Shen, Baqiao Liu, Kelly P. Williams, and Tandy Warnow</span> <span class="title">EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract)</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.2">10.4230/LIPIcs.WABI.2023.2</a> </li> <li> <span class="authors">Eleanor Wedell, Chengze Shen, and Tandy Warnow</span> <span class="title">BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract)</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.3">10.4230/LIPIcs.WABI.2023.3</a> </li> <li> <span class="authors">Shayesteh Arasti and Siavash Mirarab</span> <span class="title">Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.4">10.4230/LIPIcs.WABI.2023.4</a> </li> <li> <span class="authors">Junyan Dai, Tobias Rubel, Yunheng Han, and Erin K. Molloy</span> <span class="title">Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.5">10.4230/LIPIcs.WABI.2023.5</a> </li> <li> <span class="authors">Paweł Górecki, Natalia Rutecka, Agnieszka Mykowiecka, and Jarosław Paszek</span> <span class="title">Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.6">10.4230/LIPIcs.WABI.2023.6</a> </li> <li> <span class="authors">Leo van Iersel, Mark Jones, Esther Julien, and Yukihiro Murakami</span> <span class="title">Making a Network Orchard by Adding Leaves</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.7">10.4230/LIPIcs.WABI.2023.7</a> </li> <li> <span class="authors">Yunheng Han and Erin K. Molloy</span> <span class="title">Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract)</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.8">10.4230/LIPIcs.WABI.2023.8</a> </li> <li> <span class="authors">Mrinmoy Saha Roddur, Sagi Snir, and Mohammed El-Kebir</span> <span class="title">Inferring Temporally Consistent Migration Histories</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.9">10.4230/LIPIcs.WABI.2023.9</a> </li> <li> <span class="authors">Nicola Rizzo, Manuel Cáceres, and Veli Mäkinen</span> <span class="title">Finding Maximal Exact Matches in Graphs</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.10">10.4230/LIPIcs.WABI.2023.10</a> </li> <li> <span class="authors">Yutong Qiu, Yihang Shen, and Carl Kingsford</span> <span class="title">Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.11">10.4230/LIPIcs.WABI.2023.11</a> </li> <li> <span class="authors">Jyotshna Rajput, Ghanshyam Chandra, and Chirag Jain</span> <span class="title">Co-Linear Chaining on Pangenome Graphs</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.12">10.4230/LIPIcs.WABI.2023.12</a> </li> <li> <span class="authors">Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, and Travis Gagie</span> <span class="title">Acceleration of FM-Index Queries Through Prefix-Free Parsing</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.13">10.4230/LIPIcs.WABI.2023.13</a> </li> <li> <span class="authors">Tizian Schulz and Paul Medvedev</span> <span class="title">Exact Sketch-Based Read Mapping</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.14">10.4230/LIPIcs.WABI.2023.14</a> </li> <li> <span class="authors">Timothé Rouzé, Igor Martayan, Camille Marchet, and Antoine Limasset</span> <span class="title">Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.15">10.4230/LIPIcs.WABI.2023.15</a> </li> <li> <span class="authors">Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin Molloy, and Rob Patro</span> <span class="title">Fast, Parallel, and Cache-Friendly Suffix Array Construction</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.16">10.4230/LIPIcs.WABI.2023.16</a> </li> <li> <span class="authors">Amatur Rahman, Yoann Dufresne, and Paul Medvedev</span> <span class="title">Compression Algorithm for Colored de Bruijn Graphs</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.17">10.4230/LIPIcs.WABI.2023.17</a> </li> <li> <span class="authors">Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, and Rob Patro</span> <span class="title">Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.18">10.4230/LIPIcs.WABI.2023.18</a> </li> <li> <span class="authors">Mateo Gray, Sebastian Will, and Hosna Jabbari</span> <span class="title">SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.19">10.4230/LIPIcs.WABI.2023.19</a> </li> <li> <span class="authors">Théo Boury, Yann Ponty, and Vladimir Reinharz</span> <span class="title">Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.20">10.4230/LIPIcs.WABI.2023.20</a> </li> <li> <span class="authors">Xinyu Gu, Yuanyuan Qi, and Mohammed El-Kebir</span> <span class="title">Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.21">10.4230/LIPIcs.WABI.2023.21</a> </li> <li> <span class="authors">Leonard Bohnenkämper</span> <span class="title">Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.22">10.4230/LIPIcs.WABI.2023.22</a> </li> <li> <span class="authors">Mohsen Ferdosi, Yuejun Ge, and Carl Kingsford</span> <span class="title">Reinforcement Learning for Robotic Liquid Handler Planning</span> <a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2023.23">10.4230/LIPIcs.WABI.2023.23</a> </li> </ul>
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