<h2>LIPIcs, Volume 312, WABI 2024</h2>
<ul>
<li>
<span class="authors">Solon P. Pissis and Wing-Kin Sung</span>
<span class="title">LIPIcs, Volume 312, WABI 2024, Complete Volume</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024">10.4230/LIPIcs.WABI.2024</a>
</li>
<li>
<span class="authors">Solon P. Pissis and Wing-Kin Sung</span>
<span class="title">Front Matter, Table of Contents, Preface, Conference Organization</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.0">10.4230/LIPIcs.WABI.2024.0</a>
</li>
<li>
<span class="authors">Tomáš Vinař</span>
<span class="title">Bioinformatics of Pathogens (Invited Talk)</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.1">10.4230/LIPIcs.WABI.2024.1</a>
</li>
<li>
<span class="authors">Luís Cunha, Ignasi Sau, and Uéverton Souza</span>
<span class="title">On the Complexity of the Median and Closest Permutation Problems</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.2">10.4230/LIPIcs.WABI.2024.2</a>
</li>
<li>
<span class="authors">Yao-ban Chan</span>
<span class="title">An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.3">10.4230/LIPIcs.WABI.2024.3</a>
</li>
<li>
<span class="authors">Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, and Ben Langmead</span>
<span class="title">MEM-Based Pangenome Indexing for k-mer Queries</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.4">10.4230/LIPIcs.WABI.2024.4</a>
</li>
<li>
<span class="authors">Lukas Hübner and Alexandros Stamatakis</span>
<span class="title">Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.5">10.4230/LIPIcs.WABI.2024.5</a>
</li>
<li>
<span class="authors">Mahmudur Rahman Hera and David Koslicki</span>
<span class="title">Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.6">10.4230/LIPIcs.WABI.2024.6</a>
</li>
<li>
<span class="authors">Yuanyuan Qi and Mohammed El-Kebir</span>
<span class="title">Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.7">10.4230/LIPIcs.WABI.2024.7</a>
</li>
<li>
<span class="authors">Sebastian Schmidt, Santeri Toivonen, Paul Medvedev, and Alexandru I. Tomescu</span>
<span class="title">Applying the Safe-And-Complete Framework to Practical Genome Assembly</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.8">10.4230/LIPIcs.WABI.2024.8</a>
</li>
<li>
<span class="authors">Tsuyoshi Urata, Manato Yokoyama, and Momoko Hayamizu</span>
<span class="title">Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.9">10.4230/LIPIcs.WABI.2024.9</a>
</li>
<li>
<span class="authors">Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, and Jan Fostier</span>
<span class="title">b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.10">10.4230/LIPIcs.WABI.2024.10</a>
</li>
<li>
<span class="authors">Ragnar Groot Koerkamp and Giulio Ermanno Pibiri</span>
<span class="title">The mod-minimizer: A Simple and Efficient Sampling Algorithm for Long k-mers</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.11">10.4230/LIPIcs.WABI.2024.11</a>
</li>
<li>
<span class="authors">Leonard Bohnenkämper, Jens Stoye, and Daniel Dörr</span>
<span class="title">Reconstructing Rearrangement Phylogenies of Natural Genomes</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.12">10.4230/LIPIcs.WABI.2024.12</a>
</li>
<li>
<span class="authors">Md. Hasin Abrar and Paul Medvedev</span>
<span class="title">PLA-index: A k-mer Index Exploiting Rank Curve Linearity</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.13">10.4230/LIPIcs.WABI.2024.13</a>
</li>
<li>
<span class="authors">Rocco Ascone, Giulia Bernardini, Alessio Conte, Massimo Equi, Esteban Gabory, Roberto Grossi, and Nadia Pisanti</span>
<span class="title">A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.14">10.4230/LIPIcs.WABI.2024.14</a>
</li>
<li>
<span class="authors">Jens Zentgraf and Sven Rahmann</span>
<span class="title">Swiftly Identifying Strongly Unique k-Mers</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.15">10.4230/LIPIcs.WABI.2024.15</a>
</li>
<li>
<span class="authors">Bertrand Marchand, Nadia Tahiri, Olivier Tremblay-Savard, and Manuel Lafond</span>
<span class="title">Finding Maximum Common Contractions Between Phylogenetic Networks</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.16">10.4230/LIPIcs.WABI.2024.16</a>
</li>
<li>
<span class="authors">Ragnar Groot Koerkamp</span>
<span class="title">A*PA2: Up to 19× Faster Exact Global Alignment</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.17">10.4230/LIPIcs.WABI.2024.17</a>
</li>
<li>
<span class="authors">Kimon Boehmer, Sarah J. Berkemer, Sebastian Will, and Yann Ponty</span>
<span class="title">RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.18">10.4230/LIPIcs.WABI.2024.18</a>
</li>
<li>
<span class="authors">Théo Boury, Laurent Bulteau, and Yann Ponty</span>
<span class="title">RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.19">10.4230/LIPIcs.WABI.2024.19</a>
</li>
<li>
<span class="authors">Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, and Manuel Lafond</span>
<span class="title">The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.20">10.4230/LIPIcs.WABI.2024.20</a>
</li>
<li>
<span class="authors">Giovanni Buzzega, Alessio Conte, Roberto Grossi, and Giulia Punzi</span>
<span class="title">McDag: Indexing Maximal Common Subsequences in Practice</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.21">10.4230/LIPIcs.WABI.2024.21</a>
</li>
<li>
<span class="authors">Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, and Mingfu Shao</span>
<span class="title">Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.22">10.4230/LIPIcs.WABI.2024.22</a>
</li>
<li>
<span class="authors">Adam Cicherski, Anna Lisiecka, and Norbert Dojer</span>
<span class="title">AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2024.23">10.4230/LIPIcs.WABI.2024.23</a>
</li>
</ul>
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