<h2>LIPIcs, Volume 88, WABI 2017</h2>
<ul>
<li>
<span class="authors">Russell Schwartz and Knut Reinert</span>
<span class="title">LIPIcs, Volume 88, WABI'17, Complete Volume</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017">10.4230/LIPIcs.WABI.2017</a>
</li>
<li>
<span class="authors">Russell Schwartz and Knut Reinert</span>
<span class="title">Front Matter, Table of Contents, Preface, List of Authors</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.0">10.4230/LIPIcs.WABI.2017.0</a>
</li>
<li>
<span class="authors">Bahar Alipanahi, Leena Salmela, Simon J. Puglisi, Martin Muggli, and Christina Boucher</span>
<span class="title">Disentangled Long-Read De Bruijn Graphs via Optical Maps</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.1">10.4230/LIPIcs.WABI.2017.1</a>
</li>
<li>
<span class="authors">Md. Shamsuzzoha Bayzid and Tandy Warnow</span>
<span class="title">Gene Tree Parsimony for Incomplete Gene Trees</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.2">10.4230/LIPIcs.WABI.2017.2</a>
</li>
<li>
<span class="authors">Brian Brubach, Jay Ghurye, Mihai Pop, and Aravind Srinivasan</span>
<span class="title">Better Greedy Sequence Clustering with Fast Banded Alignment</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.3">10.4230/LIPIcs.WABI.2017.3</a>
</li>
<li>
<span class="authors">Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, and Dimitris Polychronopoulos</span>
<span class="title">Optimal Computation of Overabundant Words</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.4">10.4230/LIPIcs.WABI.2017.4</a>
</li>
<li>
<span class="authors">Michal Aleksander Ciach, Anna Muszewska, and Pawel Górecki</span>
<span class="title">Detecting Locus Acquisition Events in Gene Trees</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.5">10.4230/LIPIcs.WABI.2017.5</a>
</li>
<li>
<span class="authors">Amir H. Bayegan and Peter Clote</span>
<span class="title">An IP Algorithm for RNA Folding Trajectories</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.6">10.4230/LIPIcs.WABI.2017.6</a>
</li>
<li>
<span class="authors">Samuele Girotto, Matteo Comin, and Cinzia Pizzi</span>
<span class="title">Fast Spaced Seed Hashing</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.7">10.4230/LIPIcs.WABI.2017.7</a>
</li>
<li>
<span class="authors">Nadia El-Mabrouk and Aïda Ouangraoua</span>
<span class="title">A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.8">10.4230/LIPIcs.WABI.2017.8</a>
</li>
<li>
<span class="authors">Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, and Cátia Vaz</span>
<span class="title">Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.9">10.4230/LIPIcs.WABI.2017.9</a>
</li>
<li>
<span class="authors">Mohamed K. Gunady, Steffen Cornwell, Stephen M. Mount, and Héctor Corrada Bravo</span>
<span class="title">Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.10">10.4230/LIPIcs.WABI.2017.10</a>
</li>
<li>
<span class="authors">Chenyue W. Hu, Hanyang Li, and Amina A. Qutub</span>
<span class="title">Shrinkage Clustering: A Fast and Size-Constrained Algorithm for Biomedical Applications</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.11">10.4230/LIPIcs.WABI.2017.11</a>
</li>
<li>
<span class="authors">Hosna Jabbari, Ian Wark, Carlo Montemagno, and Sebastian Will</span>
<span class="title">Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.12">10.4230/LIPIcs.WABI.2017.12</a>
</li>
<li>
<span class="authors">Jongkyu Kim and Knut Reinert</span>
<span class="title">Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.13">10.4230/LIPIcs.WABI.2017.13</a>
</li>
<li>
<span class="authors">Anastasiia Abramova and Anton Korobeynikov</span>
<span class="title">Assessing the Significance of Peptide Spectrum Match Scores</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.14">10.4230/LIPIcs.WABI.2017.14</a>
</li>
<li>
<span class="authors">Shunfu Mao, Soheil Mohajer, Kannan Ramachandran, David Tse, and Sreeram Kannan</span>
<span class="title">abSNP: RNA-Seq SNP Calling in Repetitive Regions via Abundance Estimation</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.15">10.4230/LIPIcs.WABI.2017.15</a>
</li>
<li>
<span class="authors">Sarvesh Nikumbh, Peter Ebert, and Nico Pfeifer</span>
<span class="title">All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.16">10.4230/LIPIcs.WABI.2017.16</a>
</li>
<li>
<span class="authors">Nikolai Nojgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, and Marc Hellmuth</span>
<span class="title">Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.17">10.4230/LIPIcs.WABI.2017.17</a>
</li>
<li>
<span class="authors">Fatemeh Almodaresi, Prashant Pandey, and Rob Patro</span>
<span class="title">Rainbowfish: A Succinct Colored de Bruijn Graph Representation</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.18">10.4230/LIPIcs.WABI.2017.18</a>
</li>
<li>
<span class="authors">Anton Polishko, Md. Abid Hasan, Weihua Pan, Evelien M. Bunnik, Karine Le Roch, and Stefano Lonardi</span>
<span class="title">ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.19">10.4230/LIPIcs.WABI.2017.19</a>
</li>
<li>
<span class="authors">Petr Procházka and Jan Holub</span>
<span class="title">Byte-Aligned Pattern Matching in Encoded Genomic Sequences</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.20">10.4230/LIPIcs.WABI.2017.20</a>
</li>
<li>
<span class="authors">Jens Quedenfeld and Sven Rahmann</span>
<span class="title">Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.21">10.4230/LIPIcs.WABI.2017.21</a>
</li>
<li>
<span class="authors">Abbas Roayaei Ardakany and Stefano Lonardi</span>
<span class="title">Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.22">10.4230/LIPIcs.WABI.2017.22</a>
</li>
<li>
<span class="authors">Nidhi Shah, Stephen F. Altschul, and Mihai Pop</span>
<span class="title">Outlier Detection in BLAST Hits</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.23">10.4230/LIPIcs.WABI.2017.23</a>
</li>
<li>
<span class="authors">Pijus Simonaitis and Krister M. Swenson</span>
<span class="title">Finding Local Genome Rearrangements</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.24">10.4230/LIPIcs.WABI.2017.24</a>
</li>
<li>
<span class="authors">Jarkko Toivonen, Jussi Taipale, and Esko Ukkonen</span>
<span class="title">Seed-driven Learning of Position Probability Matrices from Large Sequence Sets</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.25">10.4230/LIPIcs.WABI.2017.25</a>
</li>
<li>
<span class="authors">Yves Frank, Tomas Hruz, Thomas Tschager, and Valentin Venzin</span>
<span class="title">Improved De Novo Peptide Sequencing using LC Retention Time Information</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.26">10.4230/LIPIcs.WABI.2017.26</a>
</li>
<li>
<span class="authors">Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, and Tandy Warnow</span>
<span class="title">Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL</span>
<a class="doi" href="https://doi.org/10.4230/LIPIcs.WABI.2017.27">10.4230/LIPIcs.WABI.2017.27</a>
</li>
</ul>
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