2 Search Results for "Yaman, Beyza"

Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
Short Paper
DOI: 10.4230/OASIcs.LDK.2019.15
Interlinking SciGraph and DBpedia Datasets Using Link Discovery and Named Entity Recognition Techniques

Authors: Beyza Yaman, Michele Pasin, and Markus Freudenberg

Published in: OASIcs, Volume 70, 2nd Conference on Language, Data and Knowledge (LDK 2019)

Abstract
In recent years we have seen a proliferation of Linked Open Data (LOD) compliant datasets becoming available on the web, leading to an increased number of opportunities for data consumers to build smarter applications which integrate data coming from disparate sources. However, often the integration is not easily achievable since it requires discovering and expressing associations across heterogeneous data sets. The goal of this work is to increase the discoverability and reusability of the scholarly data by integrating them to highly interlinked datasets in the LOD cloud. In order to do so we applied techniques that a) improve the identity resolution across these two sources using Link Discovery for the structured data (i.e. by annotating Springer Nature (SN) SciGraph entities with links to DBpedia entities), and b) enriching SN SciGraph unstructured text content (document abstracts) with links to DBpedia entities using Named Entity Recognition (NER). We published the results of this work using standard vocabularies and provided an interactive exploration tool which presents the discovered links w.r.t. the breadth and depth of the DBpedia classes.
Cite as

Beyza Yaman, Michele Pasin, and Markus Freudenberg. Interlinking SciGraph and DBpedia Datasets Using Link Discovery and Named Entity Recognition Techniques. In 2nd Conference on Language, Data and Knowledge (LDK 2019). Open Access Series in Informatics (OASIcs), Volume 70, pp. 15:1-15:8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{yaman_et_al:OASIcs.LDK.2019.15,
  author =	{Yaman, Beyza and Pasin, Michele and Freudenberg, Markus},
  title =	{{Interlinking SciGraph and DBpedia Datasets Using Link Discovery and Named Entity Recognition Techniques}},
  booktitle =	{2nd Conference on Language, Data and Knowledge (LDK 2019)},
  pages =	{15:1--15:8},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-105-4},
  ISSN =	{2190-6807},
  year =	{2019},
  volume =	{70},
  editor =	{Eskevich, Maria and de Melo, Gerard and F\"{a}th, Christian and McCrae, John P. and Buitelaar, Paul and Chiarcos, Christian and Klimek, Bettina and Dojchinovski, Milan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.LDK.2019.15},
  URN =		{urn:nbn:de:0030-drops-103791},
  doi =		{10.4230/OASIcs.LDK.2019.15},
  annote =	{Keywords: Linked Data, Named Entity Recognition, Link Discovery, Interlinking}
}
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