LIPIcs.ICLP.2012.359.pdf
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ASP at Work: An ASP Implementation of PhyloWS
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Technical Communications of the 28th International Conference on Logic Programming (ICLP'12) (ICLP 2012)
Series: Leibniz International Proceedings in Informatics (LIPIcs)
Conference: International Conference on Logic Programming (ICLP) - License:
Creative Commons Attribution-NoDerivs 3.0 Unported license
- Publication Date: 2012-09-05
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Tiep Le, Hieu Nguyen, Enrico Pontelli, and Tran Cao Son. ASP at Work: An ASP Implementation of PhyloWS. In Technical Communications of the 28th International Conference on Logic Programming (ICLP'12). Leibniz International Proceedings in Informatics (LIPIcs), Volume 17, pp. 359-369, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2012)
https://doi.org/10.4230/LIPIcs.ICLP.2012.359
Abstract
This paper continues the exploration started in [Bininda-Emonds,2004], aimed at demonstrating the use of logic programming technology to support a large scale deployment and analysis of phylogenetic data from biological studies. This application paper illustrates the use of ASP technology in implementing the PhyloWS web service API — a recently proposed and community-agreed standard API to enable uniform access and inter-operation among phylogenetic applications and repositories. To date, only very incomplete implementations of PhyloWS have been realized; this paper demonstrates how ASP provides an ideal technology to support a more comprehensive realization of PhyloWS on a repository of semantically-described phylogenetic studies. The paper also presents a challenge for the developers of ASP-solvers.
Subject Classification
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- Answer sets
- phylogenetic inference
- systems
- applications
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