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In a separability problem, we are given two sets K and L from a class 𝒞, and we want to decide whether there exists a set S from a class 𝒮 such that K ⊆ S and S ∩ L = ∅. In this case, we speak of separability of sets in 𝒞 by sets in 𝒮. We study two types of separability problems. First, we consider separability of semilinear sets (i.e. subsets of ℕ^d for some d) by sets definable by quantifier-free monadic Presburger formulas (or equivalently, the recognizable subsets of ℕ^d). Here, a formula is monadic if each atom uses at most one variable. Second, we consider separability of languages of Parikh automata by regular languages. A Parikh automaton is a machine with access to counters that can only be incremented, and have to meet a semilinear constraint at the end of the run. Both of these separability problems are known to be decidable with elementary complexity. Our main results are that both problems are coNP-complete. In the case of semilinear sets, coNP-completeness holds regardless of whether the input sets are specified by existential Presburger formulas, quantifier-free formulas, or semilinear representations. Our results imply that recognizable separability of rational subsets of Σ* × ℕ^d (shown decidable by Choffrut and Grigorieff) is coNP-complete as well. Another application is that regularity of deterministic Parikh automata (where the target set is specified using a quantifier-free Presburger formula) is coNP-complete as well.