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Documents authored by Lapinskas, John


Document
A Fixed-Parameter Perspective on #BIS

Authors: Radu Curticapean, Holger Dell, Fedor V. Fomin, Leslie Ann Goldberg, and John Lapinskas

Published in: LIPIcs, Volume 89, 12th International Symposium on Parameterized and Exact Computation (IPEC 2017)


Abstract
The problem of (approximately) counting the independent sets of a bipartite graph (#BIS) is the canonical approximate counting problem that is complete in the intermediate complexity class #RHPi_1. It is believed that #BIS does not have an efficient approximation algorithm but also that it is not NP-hard. We study the robustness of the intermediate complexity of #BIS by considering variants of the problem parameterised by the size of the independent set. We map the complexity landscape for three problems, with respect to exact computation and approximation and with respect to conventional and parameterised complexity. The three problems are counting independent sets of a given size, counting independent sets with a given number of vertices in one vertex class and counting maximum independent sets amongst those with a given number of vertices in one vertex class. Among other things, we show that all of these problems are NP-hard to approximate within any polynomial ratio. (This is surprising because the corresponding problems without the size parameter are complete in #RHPi_1, and hence are not believed to be NP-hard.) We also show that the first problem is #W[1]-hard to solve exactly but admits an FPTRAS, whereas the other two are W[1]-hard to approximate even within any polynomial ratio. Finally, we show that, when restricted to graphs of bounded degree, all three problems have efficient exact fixed-parameter algorithms.

Cite as

Radu Curticapean, Holger Dell, Fedor V. Fomin, Leslie Ann Goldberg, and John Lapinskas. A Fixed-Parameter Perspective on #BIS. In 12th International Symposium on Parameterized and Exact Computation (IPEC 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 89, pp. 13:1-13:13, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2018)


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@InProceedings{curticapean_et_al:LIPIcs.IPEC.2017.13,
  author =	{Curticapean, Radu and Dell, Holger and Fomin, Fedor V. and Goldberg, Leslie Ann and Lapinskas, John},
  title =	{{A Fixed-Parameter Perspective on #BIS}},
  booktitle =	{12th International Symposium on Parameterized and Exact Computation (IPEC 2017)},
  pages =	{13:1--13:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-051-4},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{89},
  editor =	{Lokshtanov, Daniel and Nishimura, Naomi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2017.13},
  URN =		{urn:nbn:de:0030-drops-85613},
  doi =		{10.4230/LIPIcs.IPEC.2017.13},
  annote =	{Keywords: Approximate counting, parameterised complexity, independent sets}
}
Document
Amplifiers for the Moran Process

Authors: Andreas Galanis, Andreas Göbel, Leslie Ann Goldberg, John Lapinskas, and David Richerby

Published in: LIPIcs, Volume 55, 43rd International Colloquium on Automata, Languages, and Programming (ICALP 2016)


Abstract
The Moran process, as studied by Lieberman, Hauert and Nowak, is a randomised algorithm modelling the spread of genetic mutations in populations. The algorithm runs on an underlying graph where individuals correspond to vertices. Initially, one vertex (chosen uniformly at random) possesses a mutation, with fitness r > 1. All other individuals have fitness 1. During each step of the algorithm, an individual is chosen with probability proportional to its fitness, and its state (mutant or non-mutant) is passed on to an out-neighbour which is chosen uniformly at random. If the underlying graph is strongly connected then the algorithm will eventually reach fixation, in which all individuals are mutants, or extinction, in which no individuals are mutants. An infinite family of directed graphs is said to be strongly amplifying if, for every r > 1, the extinction probability tends to 0 as the number of vertices increases. Strong amplification is a rather surprising property - it means that in such graphs, the fixation probability of a uniformly-placed initial mutant tends to 1 even though the initial mutant only has a fixed selective advantage of r > 1 (independently of n). The name "strongly amplifying" comes from the fact that this selective advantage is "amplified". Strong amplifiers have received quite a bit of attention, and Lieberman et al. proposed two potentially strongly-amplifying families - superstars and metafunnels. Heuristic arguments have been published, arguing that there are infinite families of superstars that are strongly amplifying. The same has been claimed for metafunnels. We give the first rigorous proof that there is an infinite family of directed graphs that is strongly amplifying. We call the graphs in the family "megastars". When the algorithm is run on an n-vertex graph in this family, starting with a uniformly-chosen mutant, the extinction probability is roughly n^{-1/2} (up to logarithmic factors). We prove that all infinite families of superstars and metafunnels have larger extinction probabilities (as a function of n). Finally, we prove that our analysis of megastars is fairly tight - there is no infinite family of megastars such that the Moran algorithm gives a smaller extinction probability (up to logarithmic factors). Also, we provide a counterexample which clarifies the literature concerning the isothermal theorem of Lieberman et al. A full version [Galanis/Göbel/Goldberg/Lapinskas/Richerby, Preprint] containing detailed proofs is available at http://arxiv.org/abs/1512.05632. Theorem-numbering here matches the full version.

Cite as

Andreas Galanis, Andreas Göbel, Leslie Ann Goldberg, John Lapinskas, and David Richerby. Amplifiers for the Moran Process. In 43rd International Colloquium on Automata, Languages, and Programming (ICALP 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 55, pp. 62:1-62:13, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2016)


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@InProceedings{galanis_et_al:LIPIcs.ICALP.2016.62,
  author =	{Galanis, Andreas and G\"{o}bel, Andreas and Goldberg, Leslie Ann and Lapinskas, John and Richerby, David},
  title =	{{Amplifiers for the Moran Process}},
  booktitle =	{43rd International Colloquium on Automata, Languages, and Programming (ICALP 2016)},
  pages =	{62:1--62:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-013-2},
  ISSN =	{1868-8969},
  year =	{2016},
  volume =	{55},
  editor =	{Chatzigiannakis, Ioannis and Mitzenmacher, Michael and Rabani, Yuval and Sangiorgi, Davide},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2016.62},
  URN =		{urn:nbn:de:0030-drops-62227},
  doi =		{10.4230/LIPIcs.ICALP.2016.62},
  annote =	{Keywords: Moran process, randomised algorithm on graphs, evolutionary dynamics}
}
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