6 Search Results for "Bathie, Gabriel"

Document
DOI: 10.4230/LIPIcs.ISAAC.2023.10
Small-Space Algorithms for the Online Language Distance Problem for Palindromes and Squares

Authors: Gabriel Bathie, Tomasz Kociumaka, and Tatiana Starikovskaya

Published in: LIPIcs, Volume 283, 34th International Symposium on Algorithms and Computation (ISAAC 2023)

Abstract
We study the online variant of the language distance problem for two classical formal languages, the language of palindromes and the language of squares, and for the two most fundamental distances, the Hamming distance and the edit (Levenshtein) distance. In this problem, defined for a fixed formal language L, we are given a string T of length n, and the task is to compute the minimal distance to L from every prefix of T. We focus on the low-distance regime, where one must compute only the distances smaller than a given threshold k. In this work, our contribution is twofold: 1) First, we show streaming algorithms, which access the input string T only through a single left-to-right scan. Both for palindromes and squares, our algorithms use O(k polylog n) space and time per character in the Hamming-distance case and O(k² polylog n) space and time per character in the edit-distance case. These algorithms are randomised by necessity, and they err with probability inverse-polynomial in n. 2) Second, we show deterministic read-only online algorithms, which are also provided with read-only random access to the already processed characters of T. Both for palindromes and squares, our algorithms use O(k polylog n) space and time per character in the Hamming-distance case and O(k⁴ polylog n) space and amortised time per character in the edit-distance case.
Cite as

Gabriel Bathie, Tomasz Kociumaka, and Tatiana Starikovskaya. Small-Space Algorithms for the Online Language Distance Problem for Palindromes and Squares. In 34th International Symposium on Algorithms and Computation (ISAAC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 283, pp. 10:1-10:17, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2023)

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@InProceedings{bathie_et_al:LIPIcs.ISAAC.2023.10,
  author =	{Bathie, Gabriel and Kociumaka, Tomasz and Starikovskaya, Tatiana},
  title =	{{Small-Space Algorithms for the Online Language Distance Problem for Palindromes and Squares}},
  booktitle =	{34th International Symposium on Algorithms and Computation (ISAAC 2023)},
  pages =	{10:1--10:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-289-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{283},
  editor =	{Iwata, Satoru and Kakimura, Naonori},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2023.10},
  URN =		{urn:nbn:de:0030-drops-193124},
  doi =		{10.4230/LIPIcs.ISAAC.2023.10},
  annote =	{Keywords: Approximate pattern matching, streaming algorithms, palindromes, squares}
}
Document
PACE Solver Description
DOI: 10.4230/LIPIcs.IPEC.2022.31
PACE Solver Description: DreyFVS

Authors: Gabriel Bathie, Gaétan Berthe, Yoann Coudert-Osmont, David Desobry, Amadeus Reinald, and Mathis Rocton

Published in: LIPIcs, Volume 249, 17th International Symposium on Parameterized and Exact Computation (IPEC 2022)

Abstract
We describe DreyFVS, a heuristic for Directed Feedback Vertex Set submitted to the 2022 edition of Parameterized Algorithms and Computational Experiments Challenge. The Directed Feedback Vertex Set problem asks to remove a minimal number of vertices from a digraph such that the resulting digraph is acyclic. Our algorithm first performs a guess on a reduced instance by leveraging the Sinkhorn-Knopp algorithm, to then improve this solution by pipelining two local search methods.
Cite as

Gabriel Bathie, Gaétan Berthe, Yoann Coudert-Osmont, David Desobry, Amadeus Reinald, and Mathis Rocton. PACE Solver Description: DreyFVS. In 17th International Symposium on Parameterized and Exact Computation (IPEC 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 249, pp. 31:1-31:4, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2022)

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@InProceedings{bathie_et_al:LIPIcs.IPEC.2022.31,
  author =	{Bathie, Gabriel and Berthe, Ga\'{e}tan and Coudert-Osmont, Yoann and Desobry, David and Reinald, Amadeus and Rocton, Mathis},
  title =	{{PACE Solver Description: DreyFVS}},
  booktitle =	{17th International Symposium on Parameterized and Exact Computation (IPEC 2022)},
  pages =	{31:1--31:4},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-260-0},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{249},
  editor =	{Dell, Holger and Nederlof, Jesper},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2022.31},
  URN =		{urn:nbn:de:0030-drops-173870},
  doi =		{10.4230/LIPIcs.IPEC.2022.31},
  annote =	{Keywords: Directed Feedback Vertex Set, Heuristic, Sinkhorn algorithm, Local search}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2021.8
(Sub)linear Kernels for Edge Modification Problems Towards Structured Graph Classes

Authors: Gabriel Bathie, Nicolas Bousquet, and Théo Pierron

Published in: LIPIcs, Volume 214, 16th International Symposium on Parameterized and Exact Computation (IPEC 2021)

Abstract
In a (parameterized) graph edge modification problem, we are given a graph G, an integer k and a (usually well-structured) class of graphs 𝒢, and ask whether it is possible to transform G into a graph G' ∈ 𝒢 by adding and/or removing at most k edges. Parameterized graph edge modification problems received considerable attention in the last decades. In this paper, we focus on finding small kernels for edge modification problems. One of the most studied problems is the Cluster Editing problem, in which the goal is to partition the vertex set into a disjoint union of cliques. Even if this problem admits a 2k kernel [Cao and Chen, 2012], this kernel does not reduce the size of most instances. Therefore, we explore the question of whether linear kernels are a theoretical limit in edge modification problems, in particular when the target graphs are very structured (such as a partition into cliques for instance). We prove, as far as we know, the first sublinear kernel for an edge modification problem. Namely, we show that Clique + Independent Set Deletion, which is a restriction of Cluster Deletion, admits a kernel of size O(k/log k). We also obtain small kernels for several other edge modification problems. We prove that Split Addition (and the equivalent Split Deletion) admits a linear kernel, improving the existing quadratic kernel of Ghosh et al. [Ghosh et al., 2015]. We complement this result by proving that Trivially Perfect Addition admits a quadratic kernel (improving the cubic kernel of Guo [Guo, 2007]), and finally prove that its triangle-free version (Starforest Deletion) admits a linear kernel, which is optimal under ETH.
Cite as

Gabriel Bathie, Nicolas Bousquet, and Théo Pierron. (Sub)linear Kernels for Edge Modification Problems Towards Structured Graph Classes. In 16th International Symposium on Parameterized and Exact Computation (IPEC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 214, pp. 8:1-8:14, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2021)

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@InProceedings{bathie_et_al:LIPIcs.IPEC.2021.8,
  author =	{Bathie, Gabriel and Bousquet, Nicolas and Pierron, Th\'{e}o},
  title =	{{(Sub)linear Kernels for Edge Modification Problems Towards Structured Graph Classes}},
  booktitle =	{16th International Symposium on Parameterized and Exact Computation (IPEC 2021)},
  pages =	{8:1--8:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-216-7},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{214},
  editor =	{Golovach, Petr A. and Zehavi, Meirav},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2021.8},
  URN =		{urn:nbn:de:0030-drops-153918},
  doi =		{10.4230/LIPIcs.IPEC.2021.8},
  annote =	{Keywords: kernelization, graph editing, split graphs, (sub)linear kernels}
}
Document
PACE Solver Description
DOI: 10.4230/LIPIcs.IPEC.2021.29
PACE Solver Description: PaSTEC - PAths, Stars and Twins to Edit Towards Clusters

Authors: Valentin Bartier, Gabriel Bathie, Nicolas Bousquet, Marc Heinrich, Théo Pierron, and Ulysse Prieto

Published in: LIPIcs, Volume 214, 16th International Symposium on Parameterized and Exact Computation (IPEC 2021)

Abstract
This document describes our exact Cluster Editing solver, PaSTEC, which got the third place in the 2021 PACE Challenge.
Cite as

Valentin Bartier, Gabriel Bathie, Nicolas Bousquet, Marc Heinrich, Théo Pierron, and Ulysse Prieto. PACE Solver Description: PaSTEC - PAths, Stars and Twins to Edit Towards Clusters. In 16th International Symposium on Parameterized and Exact Computation (IPEC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 214, pp. 29:1-29:4, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2021)

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@InProceedings{bartier_et_al:LIPIcs.IPEC.2021.29,
  author =	{Bartier, Valentin and Bathie, Gabriel and Bousquet, Nicolas and Heinrich, Marc and Pierron, Th\'{e}o and Prieto, Ulysse},
  title =	{{PACE Solver Description: PaSTEC - PAths, Stars and Twins to Edit Towards Clusters}},
  booktitle =	{16th International Symposium on Parameterized and Exact Computation (IPEC 2021)},
  pages =	{29:1--29:4},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-216-7},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{214},
  editor =	{Golovach, Petr A. and Zehavi, Meirav},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2021.29},
  URN =		{urn:nbn:de:0030-drops-154129},
  doi =		{10.4230/LIPIcs.IPEC.2021.29},
  annote =	{Keywords: cluster editing, exact algorithm, star packing, twins}
}
Document
PACE Solver Description
DOI: 10.4230/LIPIcs.IPEC.2021.33
PACE Solver Description: μSolver - Heuristic Track

Authors: Valentin Bartier, Gabriel Bathie, Nicolas Bousquet, Marc Heinrich, Théo Pierron, and Ulysse Prieto

Published in: LIPIcs, Volume 214, 16th International Symposium on Parameterized and Exact Computation (IPEC 2021)

Abstract
This document describes our heuristic Cluster Editing solver, μSolver, which got the third place in the 2021 PACE Challenge. We present the local search and kernelization techniques for Cluster Editing that are implemented in the solver.
Cite as

Valentin Bartier, Gabriel Bathie, Nicolas Bousquet, Marc Heinrich, Théo Pierron, and Ulysse Prieto. PACE Solver Description: μSolver - Heuristic Track. In 16th International Symposium on Parameterized and Exact Computation (IPEC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 214, pp. 33:1-33:3, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2021)

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@InProceedings{bartier_et_al:LIPIcs.IPEC.2021.33,
  author =	{Bartier, Valentin and Bathie, Gabriel and Bousquet, Nicolas and Heinrich, Marc and Pierron, Th\'{e}o and Prieto, Ulysse},
  title =	{{PACE Solver Description: \muSolver - Heuristic Track}},
  booktitle =	{16th International Symposium on Parameterized and Exact Computation (IPEC 2021)},
  pages =	{33:1--33:3},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-216-7},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{214},
  editor =	{Golovach, Petr A. and Zehavi, Meirav},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2021.33},
  URN =		{urn:nbn:de:0030-drops-154161},
  doi =		{10.4230/LIPIcs.IPEC.2021.33},
  annote =	{Keywords: kernelization, graph editing, clustering, local search}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2021.119
Property Testing of Regular Languages with Applications to Streaming Property Testing of Visibly Pushdown Languages

Authors: Gabriel Bathie and Tatiana Starikovskaya

Published in: LIPIcs, Volume 198, 48th International Colloquium on Automata, Languages, and Programming (ICALP 2021)

Abstract
In this work, we revisit the problem of testing membership in regular languages, first studied by Alon et al. [Alon et al., 2001]. We develop a one-sided error property tester for regular languages under weighted edit distance that makes 𝒪(ε^{-1} log(1/ε)) non-adaptive queries, assuming that the language is described by an automaton of constant size. Moreover, we show a matching lower bound, essentially closing the problem for the edit distance. As an application, we improve the space bound of the current best streaming property testing algorithm for visibly pushdown languages from 𝒪(ε^{-4} log⁶ n) to 𝒪(ε^{-3} log⁵ n log log n), where n is the size of the input. Finally, we provide a Ω(max(ε^{-1}, log n)) lower bound on the memory necessary to test visibly pushdown languages in the streaming model, significantly narrowing the gap between the known bounds.
Cite as

Gabriel Bathie and Tatiana Starikovskaya. Property Testing of Regular Languages with Applications to Streaming Property Testing of Visibly Pushdown Languages. In 48th International Colloquium on Automata, Languages, and Programming (ICALP 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 198, pp. 119:1-119:17, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2021)

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@InProceedings{bathie_et_al:LIPIcs.ICALP.2021.119,
  author =	{Bathie, Gabriel and Starikovskaya, Tatiana},
  title =	{{Property Testing of Regular Languages with Applications to Streaming Property Testing of Visibly Pushdown Languages}},
  booktitle =	{48th International Colloquium on Automata, Languages, and Programming (ICALP 2021)},
  pages =	{119:1--119:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-195-5},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{198},
  editor =	{Bansal, Nikhil and Merelli, Emanuela and Worrell, James},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2021.119},
  URN =		{urn:nbn:de:0030-drops-141881},
  doi =		{10.4230/LIPIcs.ICALP.2021.119},
  annote =	{Keywords: property testing, regular languages, streaming algorithms, visibly pushdown languages}
}
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