Published in: LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020)
Hooman Zabeti, Nick Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell Libbrecht, and Leonid Chindelevitch. An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 172, pp. 2:1-2:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)
@InProceedings{zabeti_et_al:LIPIcs.WABI.2020.2, author = {Zabeti, Hooman and Dexter, Nick and Safari, Amir Hosein and Sedaghat, Nafiseh and Libbrecht, Maxwell and Chindelevitch, Leonid}, title = {{An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis}}, booktitle = {20th International Workshop on Algorithms in Bioinformatics (WABI 2020)}, pages = {2:1--2:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-161-0}, ISSN = {1868-8969}, year = {2020}, volume = {172}, editor = {Kingsford, Carl and Pisanti, Nadia}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.2}, URN = {urn:nbn:de:0030-drops-127911}, doi = {10.4230/LIPIcs.WABI.2020.2}, annote = {Keywords: Drug resistance, whole-genome sequencing, interpretable machine learning, integer linear programming, rule-based learning} }
Published in: LIPIcs, Volume 113, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018)
Hooman Zabeti, Tamon Stephen, Bonnie Berger, and Leonid Chindelevitch. A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. In 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 113, pp. 1:1-1:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@InProceedings{zabeti_et_al:LIPIcs.WABI.2018.1, author = {Zabeti, Hooman and Stephen, Tamon and Berger, Bonnie and Chindelevitch, Leonid}, title = {{A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models}}, booktitle = {18th International Workshop on Algorithms in Bioinformatics (WABI 2018)}, pages = {1:1--1:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-082-8}, ISSN = {1868-8969}, year = {2018}, volume = {113}, editor = {Parida, Laxmi and Ukkonen, Esko}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.1}, URN = {urn:nbn:de:0030-drops-93034}, doi = {10.4230/LIPIcs.WABI.2018.1}, annote = {Keywords: Metabolic network analysis, elemental imbalance, linear programming, model verification} }
Published in: LIPIcs, Volume 113, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018)
Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cedric Chauve, and Leonid Chindelevitch. PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. In 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 113, pp. 20:1-20:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@InProceedings{mansouri_et_al:LIPIcs.WABI.2018.20, author = {Mansouri, Mehrdad and Booth, Julian and Vityaz, Margaryta and Chauve, Cedric and Chindelevitch, Leonid}, title = {{PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats}}, booktitle = {18th International Workshop on Algorithms in Bioinformatics (WABI 2018)}, pages = {20:1--20:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-082-8}, ISSN = {1868-8969}, year = {2018}, volume = {113}, editor = {Parida, Laxmi and Ukkonen, Esko}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.20}, URN = {urn:nbn:de:0030-drops-93227}, doi = {10.4230/LIPIcs.WABI.2018.20}, annote = {Keywords: Variable-Number Tandem Repeats, Copy number, Bacterial genomics} }
Published in: LIPIcs, Volume 103, 17th International Symposium on Experimental Algorithms (SEA 2018)
Nafiseh Sedaghat, Tamon Stephen, and Leonid Chindelevitch. Speeding up Dualization in the Fredman-Khachiyan Algorithm B. In 17th International Symposium on Experimental Algorithms (SEA 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 103, pp. 6:1-6:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@InProceedings{sedaghat_et_al:LIPIcs.SEA.2018.6, author = {Sedaghat, Nafiseh and Stephen, Tamon and Chindelevitch, Leonid}, title = {{Speeding up Dualization in the Fredman-Khachiyan Algorithm B}}, booktitle = {17th International Symposium on Experimental Algorithms (SEA 2018)}, pages = {6:1--6:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-070-5}, ISSN = {1868-8969}, year = {2018}, volume = {103}, editor = {D'Angelo, Gianlorenzo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2018.6}, URN = {urn:nbn:de:0030-drops-89413}, doi = {10.4230/LIPIcs.SEA.2018.6}, annote = {Keywords: Monotone boolean functions, dualization, Fredman-Khachiyan algorithm, algorithm engineering, metabolic networks} }
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