2 Search Results for "Salvador, Liliana"

Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
DOI: 10.4230/DagSemProc.05081.6
MiKO---Mikado Koncurrent Objects

Authors: Francisco Martins, Liliana Salvador, Vasco T. Vasconcelos, and Luís Lopes

Published in: Dagstuhl Seminar Proceedings, Volume 5081, Foundations of Global Computing (2006)

Abstract
The motivation for the Mikado migration model is to provide programming constructs for controlling code mobility that are as independent as possible from the particular programming language used to program the code. The main idea is to regard a domain (or site, or locality), where mobile code may enter or exit, as a membrane enclosing running processes, and offering services that have to be called for entering or exiting the domain. MiKO---Mikado Koncurrent Objects is a particular instance of this model, where the membrane is explicitly split in two parts: the methods defining the interface, and a process part describing the data for, and the behavior of, the interface. The talk presents the syntax, operational semantics, and type system of MiKO, together with an example. It concludes by briefly mentioning the implementation of a language based on the calculus.
Cite as

Francisco Martins, Liliana Salvador, Vasco T. Vasconcelos, and Luís Lopes. MiKO---Mikado Koncurrent Objects. In Foundations of Global Computing. Dagstuhl Seminar Proceedings, Volume 5081, pp. 1-43, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)

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@InProceedings{martins_et_al:DagSemProc.05081.6,
  author =	{Martins, Francisco and Salvador, Liliana and Vasconcelos, Vasco T. and Lopes, Lu{\'\i}s},
  title =	{{MiKO---Mikado Koncurrent Objects}},
  booktitle =	{Foundations of Global Computing},
  pages =	{1--43},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2006},
  volume =	{5081},
  editor =	{Jos\'{e} Luiz Fiadeiro and Ugo Montanari and Martin Wirsing},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05081.6},
  URN =		{urn:nbn:de:0030-drops-3014},
  doi =		{10.4230/DagSemProc.05081.6},
  annote =	{Keywords: Global computing, code migration, administrative domains, process calculus}
}
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