7 Search Results for "Pettersson, William"

Document
DOI: 10.4230/LIPIcs.IPEC.2025.9
An ETH-Tight FPT Algorithm for Rejection-Proof Set Packing with Applications to Kidney Exchange

Authors: Bart M. P. Jansen, Jeroen S. K. Lamme, and Ruben F. A. Verhaegh

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
We study the parameterized complexity of a recently introduced multi-agent variant of the Kidney Exchange problem. Given a directed graph G and integers d and k, the standard problem asks whether G contains a packing of vertex-disjoint cycles, each of length ≤ d, covering at least k vertices in total. In the multi-agent setting we consider, the vertex set is partitioned over several agents who reject a cycle packing as solution if it can be modified into an alternative packing that covers more of their own vertices. A cycle packing is called rejection-proof if no agent rejects it and the problem asks whether such a packing exists that covers at least k vertices. We exploit the sunflower lemma on a set packing formulation of the problem to give a kernel for this Σ₂^P-complete problem that is polynomial in k for all constant values of d. We also provide a 2^𝒪(k log k) + n^𝒪(1) algorithm based on it and show that this FPT algorithm is asymptotically optimal under the ETH. Further, we generalize the problem by including an additional positive integer c in the input that naturally captures how much agents can modify a given cycle packing to reject it. For every constant c, the resulting problem simplifies from being Σ₂^P-complete to NP-complete. The super-exponential lower bound already holds for c = 2, though. We present an ad-hoc single-exponential algorithm for c = 1. These results reveal an interesting discrepancy between the classical and parameterized complexity of the problem and give a good view of what makes it hard.
Cite as

Bart M. P. Jansen, Jeroen S. K. Lamme, and Ruben F. A. Verhaegh. An ETH-Tight FPT Algorithm for Rejection-Proof Set Packing with Applications to Kidney Exchange. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 9:1-9:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jansen_et_al:LIPIcs.IPEC.2025.9,
  author =	{Jansen, Bart M. P. and Lamme, Jeroen S. K. and Verhaegh, Ruben F. A.},
  title =	{{An ETH-Tight FPT Algorithm for Rejection-Proof Set Packing with Applications to Kidney Exchange}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{9:1--9:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.9},
  URN =		{urn:nbn:de:0030-drops-251414},
  doi =		{10.4230/LIPIcs.IPEC.2025.9},
  annote =	{Keywords: Parameterized complexity, Multi-agent kidney exchange, Kernelization, Set packing}
}
Document
DOI: 10.4230/LIPIcs.CP.2025.21
Practically Feasible Proof Logging for Pseudo-Boolean Optimization

Authors: Wietze Koops, Daniel Le Berre, Magnus O. Myreen, Jakob Nordström, Andy Oertel, Yong Kiam Tan, and Marc Vinyals

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
Certifying solvers have long been standard for decision problems in Boolean satisfiability (SAT), allowing for proof logging and checking with very limited overhead, but developing similar tools for combinatorial optimization has remained a challenge. A recent promising approach covering a wide range of solving paradigms is pseudo-Boolean proof logging, but this has mostly consisted of proof-of-concept works far from delivering the performance required for real-world deployment. In this work, we present an efficient toolchain based on VeriPB and CakePB for formally verified pseudo-Boolean optimization. We implement proof logging for the full range of techniques in the state-of-the-art solvers RoundingSat and Sat4j, including core-guided search and linear programming integration with Farkas certificates and cut generation. Our experimental evaluation shows that proof logging and checking performance in this much more expressive paradigm is now quite close to the level of SAT solving, and hence is clearly practically feasible.
Cite as

Wietze Koops, Daniel Le Berre, Magnus O. Myreen, Jakob Nordström, Andy Oertel, Yong Kiam Tan, and Marc Vinyals. Practically Feasible Proof Logging for Pseudo-Boolean Optimization. In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 21:1-21:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{koops_et_al:LIPIcs.CP.2025.21,
  author =	{Koops, Wietze and Le Berre, Daniel and Myreen, Magnus O. and Nordstr\"{o}m, Jakob and Oertel, Andy and Tan, Yong Kiam and Vinyals, Marc},
  title =	{{Practically Feasible Proof Logging for Pseudo-Boolean Optimization}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{21:1--21:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.21},
  URN =		{urn:nbn:de:0030-drops-238825},
  doi =		{10.4230/LIPIcs.CP.2025.21},
  annote =	{Keywords: proof logging, certifying algorithms, combinatorial optimization, certification, pseudo-Boolean solving, 0-1 integer linear programming}
}
Document
DOI: 10.4230/LIPIcs.SAND.2025.7
Better Late, Then? The Hardness of Choosing Delays to Meet Passenger Demands in Temporal Graphs

Authors: David C. Kutner and Anouk Sommer

Published in: LIPIcs, Volume 330, 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)

Abstract
In train networks, carefully-chosen delays may be beneficial for certain passengers, who would otherwise miss some connection. Given a simple (directed or undirected) temporal graph and a set of passengers (each specifying a starting vertex, an ending vertex, and a desired arrival time), we ask whether it is possible to delay some of the edges of the temporal graph to realize all the passengers' demands. We call this problem DelayBetter (DB), and study it along with two variants: in δ-DelayBetter, each delay must be of at most δ; in (δ-)Path DB, passengers also fully specify the vertices they should visit on their journey. On the positive side, we give a polynomial-time algorithm for Path DB and δ-Path DB, and obtain as a corollary a polynomial-time algorithm for DB and δ-DB on trees. We also provide an fpt algorithm for both problems parameterized by the size of the graph’s Feedback Edge Set together with the number of passengers. On the negative side, we show NP-completeness of (1-)DB on bounded-degree temporal graphs even when the lifetime is 2, and of (10-)DB on bounded-degree planar temporal graphs of lifetime 19. Our results complement previous work studying reachability problems in temporal graphs with delaying operations. This is to our knowledge the first such problem in which the aim is to facilitate travel between specific points (as opposed to facilitating or impeding a broadcast from one or many sources).
Cite as

David C. Kutner and Anouk Sommer. Better Late, Then? The Hardness of Choosing Delays to Meet Passenger Demands in Temporal Graphs. In 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 330, pp. 7:1-7:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kutner_et_al:LIPIcs.SAND.2025.7,
  author =	{Kutner, David C. and Sommer, Anouk},
  title =	{{Better Late, Then? The Hardness of Choosing Delays to Meet Passenger Demands in Temporal Graphs}},
  booktitle =	{4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)},
  pages =	{7:1--7:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-368-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{330},
  editor =	{Meeks, Kitty and Scheideler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2025.7},
  URN =		{urn:nbn:de:0030-drops-230604},
  doi =		{10.4230/LIPIcs.SAND.2025.7},
  annote =	{Keywords: Temporal Graphs, Computational Complexity, Delay Management, Train Networks}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
DOI: 10.4230/LIPIcs.STACS.2017.18
The Parameterized Complexity of Finding a 2-Sphere in a Simplicial Complex

Authors: Benjamin Burton, Sergio Cabello, Stefan Kratsch, and William Pettersson

Published in: LIPIcs, Volume 66, 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)

Abstract
We consider the problem of finding a subcomplex K' of a simplicial complex K such that K' is homeomorphic to the 2-dimensional sphere, S^2. We study two variants of this problem. The first asks if there exists such a K' with at most k triangles, and we show that this variant is W[1]-hard and, assuming ETH, admits no O(n^(o(sqrt(k)))) time algorithm. We also give an algorithm that is tight with regards to this lower bound. The second problem is the dual of the first, and asks if K' can be found by removing at most k triangles from K. This variant has an immediate O(3^k poly(|K|)) time algorithm, and we show that it admits a polynomial kernelization to O(k^2) triangles, as well as a polynomial compression to a weighted version with bit-size O(k log k).
Cite as

Benjamin Burton, Sergio Cabello, Stefan Kratsch, and William Pettersson. The Parameterized Complexity of Finding a 2-Sphere in a Simplicial Complex. In 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 66, pp. 18:1-18:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{burton_et_al:LIPIcs.STACS.2017.18,
  author =	{Burton, Benjamin and Cabello, Sergio and Kratsch, Stefan and Pettersson, William},
  title =	{{The Parameterized Complexity of Finding a 2-Sphere in a Simplicial Complex}},
  booktitle =	{34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)},
  pages =	{18:1--18:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-028-6},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{66},
  editor =	{Vollmer, Heribert and Vall\'{e}e, Brigitte},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2017.18},
  URN =		{urn:nbn:de:0030-drops-70156},
  doi =		{10.4230/LIPIcs.STACS.2017.18},
  annote =	{Keywords: computational topology, parameterized complexity, simplicial complex}
}
Document
DOI: 10.4230/LITES-v003-i001-a003
Modeling Power Consumption and Temperature in TLM Models

Authors: Matthieu Moy, Claude Helmstetter, Tayeb Bouhadiba, and Florence Maraninchi

Published in: LITES, Volume 3, Issue 1 (2016). Leibniz Transactions on Embedded Systems, Volume 3, Issue 1

Abstract
Many techniques and tools exist to estimate the power consumption and the temperature map of a chip. These tools help the hardware designers develop power efficient chips in the presence of temperature constraints. For this task, the application can be ignored or at least abstracted by some high level scenarios; at this stage, the actual embedded software is generally not available yet.However, after the hardware is defined, the embedded software can still have a significant influence on the power consumption; i.e., two implementations of the same application can consume more or less power. Moreover, the actual software power manager ensuring the temperature constraints, usually by acting dynamically on the voltage and frequency, must itself be validated. Validating such power management policy requires a model of both actuators and sensors, hence a closed-loop simulation of the functional model with a non-functional one.In this paper, we present and compare several tools to simulate the power and thermal behavior of a chip together with its functionality. We explore several levels of abstraction and study the impact on the precision of the analysis.
Cite as

Matthieu Moy, Claude Helmstetter, Tayeb Bouhadiba, and Florence Maraninchi. Modeling Power Consumption and Temperature in TLM Models. In LITES, Volume 3, Issue 1 (2016). Leibniz Transactions on Embedded Systems, Volume 3, Issue 1, pp. 03:1-03:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

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@Article{moy_et_al:LITES-v003-i001-a003,
  author =	{Moy, Matthieu and Helmstetter, Claude and Bouhadiba, Tayeb and Maraninchi, Florence},
  title =	{{Modeling Power Consumption and Temperature in TLM Models}},
  journal =	{Leibniz Transactions on Embedded Systems},
  pages =	{03:1--03:29},
  ISSN =	{2199-2002},
  year =	{2016},
  volume =	{3},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LITES-v003-i001-a003},
  URN =		{urn:nbn:de:0030-drops-192584},
  doi =		{10.4230/LITES-v003-i001-a003},
  annote =	{Keywords: Power consumption, Temperature control, Virtual prototype, SystemC, Transactional modeling}
}
Document
DOI: 10.4230/LIPIcs.SOCG.2015.270
An Edge-Based Framework for Enumerating 3-Manifold Triangulations

Authors: Benjamin A. Burton and William Pettersson

Published in: LIPIcs, Volume 34, 31st International Symposium on Computational Geometry (SoCG 2015)

Abstract
A typical census of 3-manifolds contains all manifolds (under various constraints) that can be triangulated with at most n tetrahedra. Although censuses are useful resources for mathematicians, constructing them is difficult: the best algorithms to date have not gone beyond n=12. The underlying algorithms essentially (i) enumerate all relevant 4-regular multigraphs on n nodes, and then (ii) for each multigraph G they enumerate possible 3-manifold triangulations with G as their dual 1-skeleton, of which there could be exponentially many. In practice, a small number of multigraphs often dominate the running times of census algorithms: for example, in a typical census on 10 tetrahedra, almost half of the running time is spent on just 0.3% of the graphs. Here we present a new algorithm for stage (ii), which is the computational bottleneck in this process. The key idea is to build triangulations by recursively constructing neighbourhoods of edges, in contrast to traditional algorithms which recursively glue together pairs of tetrahedron faces. We implement this algorithm, and find experimentally that whilst the overall performance is mixed, the new algorithm runs significantly faster on those "pathological" multigraphs for which existing methods are extremely slow. In this way the old and new algorithms complement one another, and together can yield significant performance improvements over either method alone.
Cite as

Benjamin A. Burton and William Pettersson. An Edge-Based Framework for Enumerating 3-Manifold Triangulations. In 31st International Symposium on Computational Geometry (SoCG 2015). Leibniz International Proceedings in Informatics (LIPIcs), Volume 34, pp. 270-284, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2015)

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@InProceedings{burton_et_al:LIPIcs.SOCG.2015.270,
  author =	{Burton, Benjamin A. and Pettersson, William},
  title =	{{An Edge-Based Framework for Enumerating 3-Manifold Triangulations}},
  booktitle =	{31st International Symposium on Computational Geometry (SoCG 2015)},
  pages =	{270--284},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-939897-83-5},
  ISSN =	{1868-8969},
  year =	{2015},
  volume =	{34},
  editor =	{Arge, Lars and Pach, J\'{a}nos},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SOCG.2015.270},
  URN =		{urn:nbn:de:0030-drops-51485},
  doi =		{10.4230/LIPIcs.SOCG.2015.270},
  annote =	{Keywords: triangulations, enumeration, graph theory}
}
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