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Documents authored by Uhrmacher, Adelinde M.

Found 2 Possible Name Variants:

Uhrmacher, Adelinde M.

Document
DOI: 10.4230/DagRep.12.10.1
Computer Science Methods for Effective and Sustainable Simulation Studies (Dagstuhl Seminar 22401)

Authors: Wentong Cai, Christopher Carothers, David M. Nicol, and Adelinde M. Uhrmacher

Published in: Dagstuhl Reports, Volume 12, Issue 10 (2023)

Abstract
This report documents the program and the (preliminary) outcomes of Dagstuhl Seminar 22401 "Computer Science Methods for Effective and Sustainable Simulation Studies". The seminar has been dedicated to addressing central methodological challenges in conducting effective and sustainable simulation studies. Lightning talks provided the opportunity for participants to present their current research and ideas to advance methodological research in modeling and simulation. However, the lion’s share of the seminar was dedicated to working groups. One working group investigated how machine learning and modeling and simulation can be effectively integrated (Intelligent Modeling and Simulation Lifecycle). Another working group focused on methodological challenges to support policy via simulation (Policy by simulation: seeing is believing for interactive model co-creation and effective intervention). A third working group identified 4 challenges closely tied to the quest for sustainable simulation studies (Context, composition, automation, and communication - towards sustainable simulation studies) thereby, focusing on the role of model-based approaches and related methods.
Cite as

Wentong Cai, Christopher Carothers, David M. Nicol, and Adelinde M. Uhrmacher. Computer Science Methods for Effective and Sustainable Simulation Studies (Dagstuhl Seminar 22401). In Dagstuhl Reports, Volume 12, Issue 10, pp. 1-60, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{cai_et_al:DagRep.12.10.1,
  author =	{Cai, Wentong and Carothers, Christopher and Nicol, David M. and Uhrmacher, Adelinde M.},
  title =	{{Computer Science Methods for Effective and Sustainable Simulation Studies (Dagstuhl Seminar 22401)}},
  pages =	{1--60},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2023},
  volume =	{12},
  number =	{10},
  editor =	{Cai, Wentong and Carothers, Christopher and Nicol, David M. and Uhrmacher, Adelinde M.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.12.10.1},
  URN =		{urn:nbn:de:0030-drops-178196},
  doi =		{10.4230/DagRep.12.10.1},
  annote =	{Keywords: Modeling, simulation, high performance computing, machine learning, visual analytics}
}
Document
DOI: 10.4230/DagRep.4.11.138
Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481)

Authors: David Gilbert, Monika Heiner, Koichi Takahashi, and Adelinde M. Uhrmacher

Published in: Dagstuhl Reports, Volume 4, Issue 11 (2015)

Abstract
This report documents the program and the outcomes of Dagstuhl Seminar 14481 "Multiscale Spatial Computational Systems Biology". This seminar explored challenges arising from the need to model and analyse complex biological systems at multiple scales (spatial and temporal), which falls within the general remit of Computational Systems Biology. A distinguishing factor of the seminar was the modelling exercise -- where teams explored different modelling paradigms, in order to better understand the details of the approaches, their challenges, potential applications, and their pros and cons. This activity was carried out in a collaborative and self-directed manner using the Open Space Technology approach as evidenced by a high degree of communication both within and between the teams. Eight teams were formed, and reports from five of them are included in this document.
Cite as

David Gilbert, Monika Heiner, Koichi Takahashi, and Adelinde M. Uhrmacher. Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481). In Dagstuhl Reports, Volume 4, Issue 11, pp. 138-226, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2015)

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@Article{gilbert_et_al:DagRep.4.11.138,
  author =	{Gilbert, David and Heiner, Monika and Takahashi, Koichi and Uhrmacher, Adelinde M.},
  title =	{{Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481)}},
  pages =	{138--226},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2015},
  volume =	{4},
  number =	{11},
  editor =	{Gilbert, David and Heiner, Monika and Takahashi, Koichi and Uhrmacher, Adelinde M.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.4.11.138},
  URN =		{urn:nbn:de:0030-drops-49723},
  doi =		{10.4230/DagRep.4.11.138},
  annote =	{Keywords: Multiscale, multidimensional, computational modelling, space, time, systems biology, synthetic biology}
}
Document
DOI: 10.4230/DagRep.1.4.41
Formal Methods in Molecular Biology (Dagstuhl Seminar 11151)

Authors: Rainer Breitling, Adelinde M. Uhrmacher, Frank J. Bruggeman, and Corrado Priami

Published in: Dagstuhl Reports, Volume 1, Issue 4 (2011)

Abstract
This report documents the program and the outcomes of the Seminar 11151 `Formal Methods in Molecular Biology' that took place in Dagstuhl, Germany, on 10--15 Apr 2011. The most recent advances in Systems Biology were discussed, as well as and the contribution of computational formalisms to the modeling of biological systems, with the focus on stochasticity. About 30 talks were given. The participants formed 5 teams that worked on selected case studies. Two teams were awarded prizes, for their efforts in analyzing and further elucidating published biological models.
Cite as

Rainer Breitling, Adelinde M. Uhrmacher, Frank J. Bruggeman, and Corrado Priami. Formal Methods in Molecular Biology (Dagstuhl Seminar 11151). In Dagstuhl Reports, Volume 1, Issue 4, pp. 41-64, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2011)

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@Article{breitling_et_al:DagRep.1.4.41,
  author =	{Breitling, Rainer and Uhrmacher, Adelinde M. and Bruggeman, Frank J. and Priami, Corrado},
  title =	{{Formal Methods in Molecular Biology (Dagstuhl Seminar 11151)}},
  pages =	{41--64},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2011},
  volume =	{1},
  number =	{4},
  editor =	{Breitling, Rainer and Uhrmacher, Adelinde M. and Bruggeman, Frank J. and Priami, Corrado},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.1.4.41},
  URN =		{urn:nbn:de:0030-drops-31975},
  doi =		{10.4230/DagRep.1.4.41},
  annote =	{Keywords: Bioinformatics, systems biology, formal modeling, computational biology, stochastic, model, simulation, checking, verification, abstraction, petri nets, process algebra}
}
Document
DOI: 10.4230/DagSemProc.06161.1
06161 Abstracts Collection – Simulation and Verification of Dynamic Systems

Authors: David M. Nicol, Corrado Priami, Hanne Riis-Nielson, and Adelinde M. Uhrmacher

Published in: Dagstuhl Seminar Proceedings, Volume 6161, Simulation and Verification of Dynamic Systems (2006)

Abstract
From 17.04.06 to 22.04.06, the Dagstuhl Seminar 06161 ``Simulation and Verification of Dynamic Systems'' was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available.
Cite as

David M. Nicol, Corrado Priami, Hanne Riis-Nielson, and Adelinde M. Uhrmacher. 06161 Abstracts Collection – Simulation and Verification of Dynamic Systems. In Simulation and Verification of Dynamic Systems. Dagstuhl Seminar Proceedings, Volume 6161, pp. 1-13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)

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@InProceedings{nicol_et_al:DagSemProc.06161.1,
  author =	{Nicol, David M. and Priami, Corrado and Riis-Nielson, Hanne and Uhrmacher, Adelinde M.},
  title =	{{06161 Abstracts Collection – Simulation and Verification of Dynamic Systems}},
  booktitle =	{Simulation and Verification of Dynamic Systems},
  pages =	{1--13},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2006},
  volume =	{6161},
  editor =	{David M. Nicol and Corrado Priami and Hanne Riis Nielson and Adelinde M. Uhrmacher},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.06161.1},
  URN =		{urn:nbn:de:0030-drops-7102},
  doi =		{10.4230/DagSemProc.06161.1},
  annote =	{Keywords: Modeling, Simulation, Verification, Dynamic Systems, Systemsbiology}
}
Document
DOI: 10.4230/DagSemProc.06161.2
06161 Executive Summary – Simulation and Verification of Dynamic Systems

Authors: Hanne Riis-Nielson, David M. Nicol, Corrado Priami, and Adelinde M. Uhrmacher

Published in: Dagstuhl Seminar Proceedings, Volume 6161, Simulation and Verification of Dynamic Systems (2006)

Abstract
Simulation is widely used for modeling engineering artifacts and natural phenomena to gain insight into the operation of those systems. Formal verification is concerned with proving or disproving the correctness of a system with respect to a certain property. Despite of these different objectives, the fields of simulation and verification address similar research challenges. Particularly, in the application area systems biology simulation and verification are moving together. The Dagstuhl Seminar was dedicated to intensifying this dialogue, and stimulating the exchange of ideas. Three working groups discussed questions: Why are biological systems difficult to model?, What role does refinement and abstraction play in combining simulation and verification?, What is the role of communication and composition in simulating and analysing dynamic systems? The results of the working groups can be found in the working groups' report.
Cite as

Hanne Riis-Nielson, David M. Nicol, Corrado Priami, and Adelinde M. Uhrmacher. 06161 Executive Summary – Simulation and Verification of Dynamic Systems. In Simulation and Verification of Dynamic Systems. Dagstuhl Seminar Proceedings, Volume 6161, pp. 1-2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)

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@InProceedings{riisnielson_et_al:DagSemProc.06161.2,
  author =	{Riis-Nielson, Hanne and Nicol, David M. and Priami, Corrado and Uhrmacher, Adelinde M.},
  title =	{{06161 Executive Summary – Simulation and Verification of Dynamic Systems}},
  booktitle =	{Simulation and Verification of Dynamic Systems},
  pages =	{1--2},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2006},
  volume =	{6161},
  editor =	{David M. Nicol and Corrado Priami and Hanne Riis Nielson and Adelinde M. Uhrmacher},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.06161.2},
  URN =		{urn:nbn:de:0030-drops-7028},
  doi =		{10.4230/DagSemProc.06161.2},
  annote =	{Keywords: Modelling, Simulation, Verification, Systemsbiology}
}
Document
DOI: 10.4230/DagSemProc.06161.3
06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification

Authors: Gregory Batt, Jeremy T. Bradley, Roland Ewald, François Fages, Holger Hermans, Jane Hillston, Peter Kemper, Alke Martens, Pieter Mosterman, Flemming Nielson, Oleg Sokolsky, and Adelinde M. Uhrmacher

Published in: Dagstuhl Seminar Proceedings, Volume 6161, Simulation and Verification of Dynamic Systems (2006)

Abstract
Simulation has found widespread use for experimentation and exploration of the possible impacts of a variety of conditions on a system. In contrast, formal verification is concerned with proving or disproving the correctness of a system with respect to a certain property, using mathematical and logical methods.
Cite as

Gregory Batt, Jeremy T. Bradley, Roland Ewald, François Fages, Holger Hermans, Jane Hillston, Peter Kemper, Alke Martens, Pieter Mosterman, Flemming Nielson, Oleg Sokolsky, and Adelinde M. Uhrmacher. 06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification. In Simulation and Verification of Dynamic Systems. Dagstuhl Seminar Proceedings, Volume 6161, pp. 1-21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)

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@InProceedings{batt_et_al:DagSemProc.06161.3,
  author =	{Batt, Gregory and Bradley, Jeremy T. and Ewald, Roland and Fages, Fran\c{c}ois and Hermans, Holger and Hillston, Jane and Kemper, Peter and Martens, Alke and Mosterman, Pieter and Nielson, Flemming and Sokolsky, Oleg and Uhrmacher, Adelinde M.},
  title =	{{06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification}},
  booktitle =	{Simulation and Verification of Dynamic Systems},
  pages =	{1--21},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2006},
  volume =	{6161},
  editor =	{David M. Nicol and Corrado Priami and Hanne Riis Nielson and Adelinde M. Uhrmacher},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.06161.3},
  URN =		{urn:nbn:de:0030-drops-7249},
  doi =		{10.4230/DagSemProc.06161.3},
  annote =	{Keywords: Modelling, Simulation, Verification, Systemsbiology}
}

Uhrmacher, Adelinde

Document
DOI: 10.4230/DagSemRep.350
Grand Challenges for Modelling and Simulation (Dagstuhl Seminar 02351)

Authors: Richard Fujimoto, W. H. Lunceford Jr., Ernst H. Page, and Adelinde Uhrmacher

Published in: Dagstuhl Seminar Reports. Dagstuhl Seminar Reports, Volume 1 (2021)

Abstract
Cite as

Richard Fujimoto, W. H. Lunceford Jr., Ernst H. Page, and Adelinde Uhrmacher. Grand Challenges for Modelling and Simulation (Dagstuhl Seminar 02351). Dagstuhl Seminar Report 350, pp. 1-75, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2002)

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@TechReport{fujimoto_et_al:DagSemRep.350,
  author =	{Fujimoto, Richard and Lunceford Jr., W. H. and Page, Ernst H. and Uhrmacher, Adelinde},
  title =	{{Grand Challenges for Modelling and Simulation (Dagstuhl Seminar 02351)}},
  pages =	{1--75},
  ISSN =	{1619-0203},
  year =	{2002},
  type = 	{Dagstuhl Seminar Report},
  number =	{350},
  institution =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemRep.350},
  URN =		{urn:nbn:de:0030-drops-152313},
  doi =		{10.4230/DagSemRep.350},
}
Document
DOI: 10.4230/DagSemRep.245
Agent Oriented Approaches in Distributed Modeling and Simulation: Challenges and Methodologies (Dagstuhl Seminar 99271)

Authors: Paul Fishwick, Adelinde Uhrmacher, and Bernard GF. Zeigler

Published in: Dagstuhl Seminar Reports. Dagstuhl Seminar Reports, Volume 1 (2021)

Abstract
Cite as

Paul Fishwick, Adelinde Uhrmacher, and Bernard GF. Zeigler. Agent Oriented Approaches in Distributed Modeling and Simulation: Challenges and Methodologies (Dagstuhl Seminar 99271). Dagstuhl Seminar Report 245, pp. 1-42, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (1999)

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@TechReport{fishwick_et_al:DagSemRep.245,
  author =	{Fishwick, Paul and Uhrmacher, Adelinde and Zeigler, Bernard GF.},
  title =	{{Agent Oriented Approaches in Distributed Modeling and Simulation: Challenges and Methodologies (Dagstuhl Seminar 99271)}},
  pages =	{1--42},
  ISSN =	{1619-0203},
  year =	{1999},
  type = 	{Dagstuhl Seminar Report},
  number =	{245},
  institution =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemRep.245},
  URN =		{urn:nbn:de:0030-drops-151311},
  doi =		{10.4230/DagSemRep.245},
}
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