7 Search Results for "Mark, Alan E."

Document
DOI: 10.4230/LIPIcs.ECOOP.2024.33
Compiling with Arrays

Authors: David Richter, Timon Böhler, Pascal Weisenburger, and Mira Mezini

Published in: LIPIcs, Volume 313, 38th European Conference on Object-Oriented Programming (ECOOP 2024)

Abstract
Linear algebra computations are foundational for neural networks and machine learning, often handled through arrays. While many functional programming languages feature lists and recursion, arrays in linear algebra demand constant-time access and bulk operations. To bridge this gap, some languages represent arrays as (eager) functions instead of lists. In this paper, we connect this idea to a formal logical foundation by interpreting functions as the usual negative types from polarized type theory, and arrays as the corresponding dual positive version of the function type. Positive types are defined to have a single elimination form whose computational interpretation is pattern matching. Just like (positive) product types bind two variables during pattern matching, (positive) array types bind variables with multiplicity during pattern matching. We follow a similar approach for Booleans by introducing conditionally-defined variables. The positive formulation for the array type enables us to combine typed partial evaluation and common subexpression elimination into an elegant algorithm whose result enjoys a property we call maximal fission, which we argue can be beneficial for further optimizations. For this purpose, we present the novel intermediate representation indexed administrative normal form (A_{i}NF), which relies on the formal logical foundation of the positive formulation for the array type to facilitate maximal loop fission and subsequent optimizations. A_{i}NF is normal with regard to commuting conversion for both let-bindings and for-loops, leading to flat and maximally fissioned terms. We mechanize the translation and normalization from a simple surface language to A_{i}NF, establishing that the process terminates, preserves types, and produces maximally fissioned terms.
Cite as

David Richter, Timon Böhler, Pascal Weisenburger, and Mira Mezini. Compiling with Arrays. In 38th European Conference on Object-Oriented Programming (ECOOP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 313, pp. 33:1-33:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{richter_et_al:LIPIcs.ECOOP.2024.33,
  author =	{Richter, David and B\"{o}hler, Timon and Weisenburger, Pascal and Mezini, Mira},
  title =	{{Compiling with Arrays}},
  booktitle =	{38th European Conference on Object-Oriented Programming (ECOOP 2024)},
  pages =	{33:1--33:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-341-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{313},
  editor =	{Aldrich, Jonathan and Salvaneschi, Guido},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2024.33},
  URN =		{urn:nbn:de:0030-drops-208823},
  doi =		{10.4230/LIPIcs.ECOOP.2024.33},
  annote =	{Keywords: array languages, functional programming, domain-specific languages, normalization by evaluation, common subexpression elimination, polarity, positive function type, intrinsic types}
}
Document
DOI: 10.4230/LIPIcs.ITP.2024.12
A Modular Formalization of Superposition in Isabelle/HOL

Authors: Martin Desharnais, Balazs Toth, Uwe Waldmann, Jasmin Blanchette, and Sophie Tourret

Published in: LIPIcs, Volume 309, 15th International Conference on Interactive Theorem Proving (ITP 2024)

Abstract
Superposition is an efficient proof calculus for reasoning about first-order logic with equality that is implemented in many automatic theorem provers. It works by saturating the given set of clauses and is refutationally complete, meaning that if the set is inconsistent, the saturation will contain a contradiction. In this work, we restructured the completeness proof to cleanly separate the ground (i.e., variable-free) and nonground aspects, and we formalized the result in Isabelle/HOL. We relied on the IsaFoR library for first-order terms and on the Isabelle saturation framework.
Cite as

Martin Desharnais, Balazs Toth, Uwe Waldmann, Jasmin Blanchette, and Sophie Tourret. A Modular Formalization of Superposition in Isabelle/HOL. In 15th International Conference on Interactive Theorem Proving (ITP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 309, pp. 12:1-12:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{desharnais_et_al:LIPIcs.ITP.2024.12,
  author =	{Desharnais, Martin and Toth, Balazs and Waldmann, Uwe and Blanchette, Jasmin and Tourret, Sophie},
  title =	{{A Modular Formalization of Superposition in Isabelle/HOL}},
  booktitle =	{15th International Conference on Interactive Theorem Proving (ITP 2024)},
  pages =	{12:1--12:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-337-9},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{309},
  editor =	{Bertot, Yves and Kutsia, Temur and Norrish, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2024.12},
  URN =		{urn:nbn:de:0030-drops-207401},
  doi =		{10.4230/LIPIcs.ITP.2024.12},
  annote =	{Keywords: Superposition, verification, first-order logic, higher-order logic}
}
Document
DOI: 10.4230/LIPIcs.SAT.2024.15
Antichain with SAT and Tries

Authors: Lukáš Holík and Pavol Vargovčík

Published in: LIPIcs, Volume 305, 27th International Conference on Theory and Applications of Satisfiability Testing (SAT 2024)

Abstract
We introduce a SAT-enabled version of an antichain algorithm for checking language emptiness of alternating finite automata (AFA) with complex transition relations encoded as compact logical formulae. The SAT solver is used to compute predecessors of AFA configurations, and at the same time, to evaluate the subsumption of newly found configurations in the antichain of the previously found ones. The algorithm could be naively implemented by an incremental SAT solver where the growing antichain is represented by adding new clauses. To make it efficient, we 1) force the SAT solver to prioritize largest/subsumption-strongest predecessors (so that weaker configurations are not even generated), and 2) store the antichain clauses in a special variant of a trie that allows fast subsumption testing. The experimental results suggest that the resulting emptiness checker is very efficient compared to the state of the art and that our techniques improve the performance of the SAT solver.
Cite as

Lukáš Holík and Pavol Vargovčík. Antichain with SAT and Tries. In 27th International Conference on Theory and Applications of Satisfiability Testing (SAT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 305, pp. 15:1-15:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{holik_et_al:LIPIcs.SAT.2024.15,
  author =	{Hol{\'\i}k, Luk\'{a}\v{s} and Vargov\v{c}{\'\i}k, Pavol},
  title =	{{Antichain with SAT and Tries}},
  booktitle =	{27th International Conference on Theory and Applications of Satisfiability Testing (SAT 2024)},
  pages =	{15:1--15:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-334-8},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{305},
  editor =	{Chakraborty, Supratik and Jiang, Jie-Hong Roland},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2024.15},
  URN =		{urn:nbn:de:0030-drops-205372},
  doi =		{10.4230/LIPIcs.SAT.2024.15},
  annote =	{Keywords: SAT, Trie, Antichain, Alternating automata, Subset query}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2023.26
Rounding via Low Dimensional Embeddings

Authors: Mark Braverman and Dor Minzer

Published in: LIPIcs, Volume 251, 14th Innovations in Theoretical Computer Science Conference (ITCS 2023)

Abstract
A regular graph G = (V,E) is an (ε,γ) small-set expander if for any set of vertices of fractional size at most ε, at least γ of the edges that are adjacent to it go outside. In this paper, we give a unified approach to several known complexity-theoretic results on small-set expanders. In particular, we show: 1) Max-Cut: we show that if a regular graph G = (V,E) is an (ε,γ) small-set expander that contains a cut of fractional size at least 1-δ, then one can find in G a cut of fractional size at least 1-O(δ/(εγ⁶)) in polynomial time. 2) Improved spectral partitioning, Cheeger’s inequality and the parallel repetition theorem over small-set expanders. The general form of each one of these results involves square-root loss that comes from certain rounding procedure, and we show how this can be avoided over small set expanders. Our main idea is to project a high dimensional vector solution into a low-dimensional space while roughly maintaining 𝓁₂² distances, and then perform a pre-processing step using low-dimensional geometry and the properties of 𝓁₂² distances over it. This pre-processing leverages the small-set expansion property of the graph to transform a vector valued solution to a different vector valued solution with additional structural properties, which give rise to more efficient integral-solution rounding schemes.
Cite as

Mark Braverman and Dor Minzer. Rounding via Low Dimensional Embeddings. In 14th Innovations in Theoretical Computer Science Conference (ITCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 251, pp. 26:1-26:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{braverman_et_al:LIPIcs.ITCS.2023.26,
  author =	{Braverman, Mark and Minzer, Dor},
  title =	{{Rounding via Low Dimensional Embeddings}},
  booktitle =	{14th Innovations in Theoretical Computer Science Conference (ITCS 2023)},
  pages =	{26:1--26:30},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-263-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{251},
  editor =	{Tauman Kalai, Yael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2023.26},
  URN =		{urn:nbn:de:0030-drops-175291},
  doi =		{10.4230/LIPIcs.ITCS.2023.26},
  annote =	{Keywords: Parallel Repetition, Small Set Expanders, Semi-Definite Programs}
}
Document
DOI: 10.4230/LIPIcs.DISC.2019.8
On the Computational Power of Radio Channels

Authors: Mark Braverman, Gillat Kol, Rotem Oshman, and Avishay Tal

Published in: LIPIcs, Volume 146, 33rd International Symposium on Distributed Computing (DISC 2019)

Abstract
Radio networks can be a challenging platform for which to develop distributed algorithms, because the network nodes must contend for a shared channel. In some cases, though, the shared medium is an advantage rather than a disadvantage: for example, many radio network algorithms cleverly use the shared channel to approximate the degree of a node, or estimate the contention. In this paper we ask how far the inherent power of a shared radio channel goes, and whether it can efficiently compute "classicaly hard" functions such as Majority, Approximate Sum, and Parity. Using techniques from circuit complexity, we show that in many cases, the answer is "no". We show that simple radio channels, such as the beeping model or the channel with collision-detection, can be approximated by a low-degree polynomial, which makes them subject to known lower bounds on functions such as Parity and Majority; we obtain round lower bounds of the form Omega(n^{delta}) on these functions, for delta in (0,1). Next, we use the technique of random restrictions, used to prove AC^0 lower bounds, to prove a tight lower bound of Omega(1/epsilon^2) on computing a (1 +/- epsilon)-approximation to the sum of the nodes' inputs. Our techniques are general, and apply to many types of radio channels studied in the literature.
Cite as

Mark Braverman, Gillat Kol, Rotem Oshman, and Avishay Tal. On the Computational Power of Radio Channels. In 33rd International Symposium on Distributed Computing (DISC 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 146, pp. 8:1-8:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{braverman_et_al:LIPIcs.DISC.2019.8,
  author =	{Braverman, Mark and Kol, Gillat and Oshman, Rotem and Tal, Avishay},
  title =	{{On the Computational Power of Radio Channels}},
  booktitle =	{33rd International Symposium on Distributed Computing (DISC 2019)},
  pages =	{8:1--8:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-126-9},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{146},
  editor =	{Suomela, Jukka},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2019.8},
  URN =		{urn:nbn:de:0030-drops-113152},
  doi =		{10.4230/LIPIcs.DISC.2019.8},
  annote =	{Keywords: radio channel, lower bounds, approximate majority}
}
Document
DOI: 10.4230/LIPIcs.WABI.2018.16
Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules

Authors: Martin S. Engler, Bertrand Caron, Lourens Veen, Daan P. Geerke, Alan E. Mark, and Gunnar W. Klau

Published in: LIPIcs, Volume 113, 18th International Workshop on Algorithms in Bioinformatics (WABI 2018)

Abstract
A key factor in computational drug design is the consistency and reliability with which intermolecular interactions between a wide variety of molecules can be described. Here we present a procedure to efficiently, reliably and automatically assign partial atomic charges to atoms based on known distributions. We formally introduce the molecular charge assignment problem, where the task is to select a charge from a set of candidate charges for every atom of a given query molecule. Charges are accompanied by a score that depends on their observed frequency in similar neighbourhoods (chemical environments) in a database of previously parameterised molecules. The aim is to assign the charges such that the total charge equals a known target charge within a margin of error while maximizing the sum of the charge scores. We show that the problem is a variant of the well-studied multiple-choice knapsack problem and thus weakly NP-complete. We propose solutions based on Integer Linear Programming and a pseudo-polynomial time Dynamic Programming algorithm. We show that the results obtained for novel molecules not included in the database are comparable to the ones obtained performing explicit charge calculations while decreasing the time to determine partial charges for a molecule by several orders of magnitude, that is, from hours or even days to below a second. Our software is openly available at https://github.com/enitram/charge_assign.
Cite as

Martin S. Engler, Bertrand Caron, Lourens Veen, Daan P. Geerke, Alan E. Mark, and Gunnar W. Klau. Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules. In 18th International Workshop on Algorithms in Bioinformatics (WABI 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 113, pp. 16:1-16:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{engler_et_al:LIPIcs.WABI.2018.16,
  author =	{Engler, Martin S. and Caron, Bertrand and Veen, Lourens and Geerke, Daan P. and Mark, Alan E. and Klau, Gunnar W.},
  title =	{{Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules}},
  booktitle =	{18th International Workshop on Algorithms in Bioinformatics (WABI 2018)},
  pages =	{16:1--16:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-082-8},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{113},
  editor =	{Parida, Laxmi and Ukkonen, Esko},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.16},
  URN =		{urn:nbn:de:0030-drops-93187},
  doi =		{10.4230/LIPIcs.WABI.2018.16},
  annote =	{Keywords: Multiple-choice knapsack, integer linear programming, pseudo-polynomial dynamic programming, partial charge assignment, molecular dynamics simulations}
}
Document
DOI: 10.4230/OASIcs.CMN.2014.209
Modifying Entity Relationship Models for Collaborative Fiction Planning and its Impact on Potential Authors

Authors: Alan Tapscott, Joaquim Colàs, Ayman Moghnieh, and Josep Blat

Published in: OASIcs, Volume 41, 2014 Workshop on Computational Models of Narrative

Abstract
We propose a modified Entity Relationship (E-R) model, traditionally used for software engineering, to structure, store and share plot data. The flexibility of E-R modelling has been demonstrated by its decades of usage in a wide variety of situations. The success of the E-R model suggests that it could be useful for collaborating fiction authors, adding a certain degree of computational power to their process. We changed the E-R model syntax to better suit the story plans, switching the emphasis from generic types to instanced story entities, but preserving relationships and attributes. We conducted a small-scale basic experiment to study the impact of using our modified E-R model on authors when understanding and contributing into a pre-existing fiction story plan. The results analysis revealed that the E-R model supports authors as effectively as written text in reading comprehension, memory, and contributing. In addition, the results show that, when combined together, the written text and the E-R model help participants achieve better comprehension--always within the frame of our experiment. We discuss potential applications of these findings.
Cite as

Alan Tapscott, Joaquim Colàs, Ayman Moghnieh, and Josep Blat. Modifying Entity Relationship Models for Collaborative Fiction Planning and its Impact on Potential Authors. In 2014 Workshop on Computational Models of Narrative. Open Access Series in Informatics (OASIcs), Volume 41, pp. 209-221, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2014)

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@InProceedings{tapscott_et_al:OASIcs.CMN.2014.209,
  author =	{Tapscott, Alan and Col\`{a}s, Joaquim and Moghnieh, Ayman and Blat, Josep},
  title =	{{Modifying Entity Relationship Models for Collaborative Fiction Planning and its Impact on Potential Authors}},
  booktitle =	{2014 Workshop on Computational Models of Narrative},
  pages =	{209--221},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-939897-71-2},
  ISSN =	{2190-6807},
  year =	{2014},
  volume =	{41},
  editor =	{Finlayson, Mark A. and Meister, Jan Christoph and Bruneau, Emile G.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.CMN.2014.209},
  URN =		{urn:nbn:de:0030-drops-46588},
  doi =		{10.4230/OASIcs.CMN.2014.209},
  annote =	{Keywords: storytelling, story planning, Entity Relationship Model}
}
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