6 Search Results for "Barton, Jonathan"

Document
DOI: 10.4230/LIPIcs.CPM.2026.14
Hardness Results on Characteristics for Elastic-Degenerate Strings

Authors: Dominik Köppl and Jannik Olbrich

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
Generalizations of plain strings have been proposed as a compact way to represent a collection of nearly identical sequences or to express uncertainty at specific text positions by enumerating all possibilities. While a plain string stores a character at each of its positions, generalizations consider a set of characters (indeterminate strings), a set of strings of equal length (generalized degenerate strings, or shortly GD strings), or a set of strings of arbitrary lengths (elastic-degenerate strings, or shortly ED strings). These generalizations are of importance to compactly represent such type of data, and find applications in bioinformatics for representing and maintaining a set of genetic sequences of the same taxonomy or a multiple sequence alignment. To be of use, attention has been drawn to answering various query types such as pattern matching or measuring similarity of ED strings by generalizing techniques known to plain strings. However, for some types of queries, it has been shown that a generalization of a polynomial-time solvable query on classic strings becomes NP-hard on ED strings, e.g. [Russo et al., 2022]. In that light, we wonder about other types of queries that are of particular interest to bioinformatics: unique substrings, absent words, anti-powers, longest previous factors, and Lempel-Ziv-like compression schemes. While we obtain a polynomial time algorithm for a variation of longest previous factors, we show that all other problems are NP-hard to compute, some of them even under the restriction that the input can be modeled as an indeterminate or GD string.
Cite as

Dominik Köppl and Jannik Olbrich. Hardness Results on Characteristics for Elastic-Degenerate Strings. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 14:1-14:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{koppl_et_al:LIPIcs.CPM.2026.14,
  author =	{K\"{o}ppl, Dominik and Olbrich, Jannik},
  title =	{{Hardness Results on Characteristics for Elastic-Degenerate Strings}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{14:1--14:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.14},
  URN =		{urn:nbn:de:0030-drops-259409},
  doi =		{10.4230/LIPIcs.CPM.2026.14},
  annote =	{Keywords: Elastic-degenerate strings, NP-hardness, longest common factor, minimal unique substring, minimal absent word, anti-power, longest previous factor}
}
Document
DOI: 10.4230/LIPIcs.STACS.2026.49
2D Minimal Graph Rigidity is in NC for One-Crossing-Minor-Free Graphs

Authors: Rohit Gurjar, Kilian Rothmund, and Thomas Thierauf

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
Minimally rigid graphs can be decided and embedded in the plane efficiently, i.e. in polynomial time. There is also an efficient randomized parallel algorithm, i.e. in RNC. We present an NC-algorithm to decide whether one-crossing-minor-free graphs are minimally rigid. In the special case of K_{3,3}-free graphs, we also compute an infinitesimally rigid embedding in NC.
Cite as

Rohit Gurjar, Kilian Rothmund, and Thomas Thierauf. 2D Minimal Graph Rigidity is in NC for One-Crossing-Minor-Free Graphs. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 49:1-49:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{gurjar_et_al:LIPIcs.STACS.2026.49,
  author =	{Gurjar, Rohit and Rothmund, Kilian and Thierauf, Thomas},
  title =	{{2D Minimal Graph Rigidity is in NC for One-Crossing-Minor-Free Graphs}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{49:1--49:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.49},
  URN =		{urn:nbn:de:0030-drops-255385},
  doi =		{10.4230/LIPIcs.STACS.2026.49},
  annote =	{Keywords: Graph Rigidity, Parallel Algorithms, Polynomial Identity Testing, Derandomization}
}
Document
DOI: 10.4230/OASIcs.Programming.2025.8
Fuzzing as Editor Feedback

Authors: Marcel Garus, Jens Lincke, and Robert Hirschfeld

Published in: OASIcs, Volume 134, Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)

Abstract
Live programming requires concrete examples, but coming up with examples takes effort. However, there are ways to execute code without specifying examples, such as fuzzing. Fuzzing is a technique that synthesizes program inputs to find bugs in security-critical software. While fuzzing focuses on finding crashes, it also produces valid inputs as a byproduct. Our approach is to make use of this to show examples, including edge cases, directly in the editor. To provide examples for individual pieces of code, we implement fuzzing at the granularity of functions. We integrate it into the compiler pipeline and language tooling of Martinaise, a custom programming language with a limited feature set. Initially, our examples are random and then mutate based on coverage feedback to reach interesting code locations and become smaller. We evaluate our tool in small case studies, showing generated examples for numbers, strings, and composite objects. Our fuzzed examples still feel synthetic, but since they are grounded in the dynamic behavior of code, they can cover the entire execution and show edge cases.
Cite as

Marcel Garus, Jens Lincke, and Robert Hirschfeld. Fuzzing as Editor Feedback. In Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025). Open Access Series in Informatics (OASIcs), Volume 134, pp. 8:1-8:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{garus_et_al:OASIcs.Programming.2025.8,
  author =	{Garus, Marcel and Lincke, Jens and Hirschfeld, Robert},
  title =	{{Fuzzing as Editor Feedback}},
  booktitle =	{Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)},
  pages =	{8:1--8:15},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-382-9},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{134},
  editor =	{Edwards, Jonathan and Perera, Roly and Petricek, Tomas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Programming.2025.8},
  URN =		{urn:nbn:de:0030-drops-242926},
  doi =		{10.4230/OASIcs.Programming.2025.8},
  annote =	{Keywords: Fuzzing, Example-based Programming, Babylonian Programming, Dynamic Analysis, Code Coverage, Randomized Testing, Function-Level Fuzzing}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.19
Profile-Guided Field Externalization in an Ahead-Of-Time Compiler

Authors: Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Field externalization is a technique to reduce the footprint of objects by removing fields that most frequently contain zero or null. While researchers have developed ways to bring this optimization into the Java world, these have been limited to research compilers or virtual machines for embedded systems. In this work, we present a novel field externalization technique that uses information from static analysis and profiling to determine externalizable fields. During compilation, we remove those fields and define companion classes. These are used in case of non-default-value writes to the externalized fields. Our approach also correctly handles synchronization to prevent issues in multithreaded environments. We integrated our approach into the modern Java ahead-of-time compiler GraalVM Native Image. We conducted an evaluation on a diverse set of benchmarks that includes standard and microservice-based benchmarks. For standard benchmarks, our approach reduces the total allocated bytes by 2.76% and the maximum resident set size (max-RSS) by 2.55%. For microservice benchmarks, we achieved a reduction of 6.88% for normalized allocated bytes and 2.45% for max-RSS. We computed these improvements via the geometric mean. The median reductions are are 1.46% (alloc. bytes) and 0.22% (max-RSS) in standard benchmarks, as well as 3.63% (alloc. bytes) and 0.20% (max-RSS) in microservice benchmarks.
Cite as

Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck. Profile-Guided Field Externalization in an Ahead-Of-Time Compiler. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 19:1-19:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kloibhofer_et_al:LIPIcs.ECOOP.2025.19,
  author =	{Kloibhofer, Sebastian and Makor, Lukas and Hofer, Peter and Leopoldseder, David and M\"{o}ssenb\"{o}ck, Hanspeter},
  title =	{{Profile-Guided Field Externalization in an Ahead-Of-Time Compiler}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{19:1--19:32},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.19},
  URN =		{urn:nbn:de:0030-drops-233121},
  doi =		{10.4230/LIPIcs.ECOOP.2025.19},
  annote =	{Keywords: compilation, instrumentation, profiling, fields, externalization, memory footprint reduction, memory footprint optimization}
}
Document
Short Paper
DOI: 10.4230/LIPIcs.GIScience.2023.69
Development and Operationalisation of Local Sustainability Indicators - A Global South Perspective on Data Challenges and Opportunities for GIScience (Short Paper)

Authors: Stefan Steiniger, Carolina Rojas, Ricardo Truffello, and Jonathan Barton

Published in: LIPIcs, Volume 277, 12th International Conference on Geographic Information Science (GIScience 2023)

Abstract
Evaluating and monitoring the sustainable development of nations and cities requires sets of indicators. Such indicator sets should measure equity, health, environmental, or governmental progress or recess - among other sustainability aspects. In 2015 the United Nations ratified 17 Sustainable Development Goals (SDG) assessed through 231 indicators. However, other - local - sets of indicators have been developed too. In this paper we review geodata challenges that emerged when we developed four sustainability indicator sets in Chile. Faced challenges include (geo)data availability and data representativeness, among others. We analyse how GIScience knowledge has contributed to indicator development and outline three priority research topics: (i) updating indicators based on automated processes, while respecting representativeness, (ii) tools for planning scenario generation, and (iii) methods for short- and long-term forecasting.
Cite as

Stefan Steiniger, Carolina Rojas, Ricardo Truffello, and Jonathan Barton. Development and Operationalisation of Local Sustainability Indicators - A Global South Perspective on Data Challenges and Opportunities for GIScience (Short Paper). In 12th International Conference on Geographic Information Science (GIScience 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 277, pp. 69:1-69:6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{steiniger_et_al:LIPIcs.GIScience.2023.69,
  author =	{Steiniger, Stefan and Rojas, Carolina and Truffello, Ricardo and Barton, Jonathan},
  title =	{{Development and Operationalisation of Local Sustainability Indicators - A Global South Perspective on Data Challenges and Opportunities for GIScience}},
  booktitle =	{12th International Conference on Geographic Information Science (GIScience 2023)},
  pages =	{69:1--69:6},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-288-4},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{277},
  editor =	{Beecham, Roger and Long, Jed A. and Smith, Dianna and Zhao, Qunshan and Wise, Sarah},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2023.69},
  URN =		{urn:nbn:de:0030-drops-189649},
  doi =		{10.4230/LIPIcs.GIScience.2023.69},
  annote =	{Keywords: geographic information, SDGs, indicators, sustainable development, Chile}
}
Document
DOI: 10.4230/LIPIcs.FUN.2021.7
1 X 1 Rush Hour with Fixed Blocks Is PSPACE-Complete

Authors: Josh Brunner, Lily Chung, Erik D. Demaine, Dylan Hendrickson, Adam Hesterberg, Adam Suhl, and Avi Zeff

Published in: LIPIcs, Volume 157, 10th International Conference on Fun with Algorithms (FUN 2021) (2020)

Abstract
Consider n²-1 unit-square blocks in an n × n square board, where each block is labeled as movable horizontally (only), movable vertically (only), or immovable - a variation of Rush Hour with only 1 × 1 cars and fixed blocks. We prove that it is PSPACE-complete to decide whether a given block can reach the left edge of the board, by reduction from Nondeterministic Constraint Logic via 2-color oriented Subway Shuffle. By contrast, polynomial-time algorithms are known for deciding whether a given block can be moved by one space, or when each block either is immovable or can move both horizontally and vertically. Our result answers a 15-year-old open problem by Tromp and Cilibrasi, and strengthens previous PSPACE-completeness results for Rush Hour with vertical 1 × 2 and horizontal 2 × 1 movable blocks and 4-color Subway Shuffle.
Cite as

Josh Brunner, Lily Chung, Erik D. Demaine, Dylan Hendrickson, Adam Hesterberg, Adam Suhl, and Avi Zeff. 1 X 1 Rush Hour with Fixed Blocks Is PSPACE-Complete. In 10th International Conference on Fun with Algorithms (FUN 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 157, pp. 7:1-7:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{brunner_et_al:LIPIcs.FUN.2021.7,
  author =	{Brunner, Josh and Chung, Lily and Demaine, Erik D. and Hendrickson, Dylan and Hesterberg, Adam and Suhl, Adam and Zeff, Avi},
  title =	{{1 X 1 Rush Hour with Fixed Blocks Is PSPACE-Complete}},
  booktitle =	{10th International Conference on Fun with Algorithms (FUN 2021)},
  pages =	{7:1--7:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-145-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{157},
  editor =	{Farach-Colton, Martin and Prencipe, Giuseppe and Uehara, Ryuhei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FUN.2021.7},
  URN =		{urn:nbn:de:0030-drops-127681},
  doi =		{10.4230/LIPIcs.FUN.2021.7},
  annote =	{Keywords: puzzles, sliding blocks, PSPACE-hardness}
}
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