Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)
Xiaoyu Chen and Weiming Feng. Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 68:1-68:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)
@InProceedings{chen_et_al:LIPIcs.APPROX/RANDOM.2025.68,
author = {Chen, Xiaoyu and Feng, Weiming},
title = {{Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree}},
booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
pages = {68:1--68:17},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-397-3},
ISSN = {1868-8969},
year = {2025},
volume = {353},
editor = {Ene, Alina and Chattopadhyay, Eshan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.68},
URN = {urn:nbn:de:0030-drops-244345},
doi = {10.4230/LIPIcs.APPROX/RANDOM.2025.68},
annote = {Keywords: coupling independence, Glauber dynamics, mixing times, relaxation times, spin systems}
}
Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)
Haonan Wu, Antonio Blanca, and Paul Medvedev. A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 20:1-20:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)
@InProceedings{wu_et_al:LIPIcs.WABI.2025.20,
author = {Wu, Haonan and Blanca, Antonio and Medvedev, Paul},
title = {{A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences}},
booktitle = {25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
pages = {20:1--20:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-386-7},
ISSN = {1868-8969},
year = {2025},
volume = {344},
editor = {Brejov\'{a}, Bro\v{n}a and Patro, Rob},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.20},
URN = {urn:nbn:de:0030-drops-239465},
doi = {10.4230/LIPIcs.WABI.2025.20},
annote = {Keywords: k-mers, sketching, mutation rates}
}
Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)
Tamal K. Dey, Jan Jendrysiak, and Michael Kerber. Decomposing Multiparameter Persistence Modules. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 41:1-41:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)
@InProceedings{dey_et_al:LIPIcs.SoCG.2025.41,
author = {Dey, Tamal K. and Jendrysiak, Jan and Kerber, Michael},
title = {{Decomposing Multiparameter Persistence Modules}},
booktitle = {41st International Symposium on Computational Geometry (SoCG 2025)},
pages = {41:1--41:19},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-370-6},
ISSN = {1868-8969},
year = {2025},
volume = {332},
editor = {Aichholzer, Oswin and Wang, Haitao},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.41},
URN = {urn:nbn:de:0030-drops-231939},
doi = {10.4230/LIPIcs.SoCG.2025.41},
annote = {Keywords: Topological Data Analysis, Multiparameter Persistence Modules, Persistence, Decomposition}
}
Published in: LIPIcs, Volume 292, 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)
Andréa Werneck Richa. Algorithmic Programmable Matter: From Local Markov Chains to "Dumb" Robots (Invited Talk). In 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 292, p. 3:1, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{richa:LIPIcs.SAND.2024.3,
author = {Richa, Andr\'{e}a Werneck},
title = {{Algorithmic Programmable Matter: From Local Markov Chains to "Dumb" Robots}},
booktitle = {3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)},
pages = {3:1--3:1},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-315-7},
ISSN = {1868-8969},
year = {2024},
volume = {292},
editor = {Casteigts, Arnaud and Kuhn, Fabian},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2024.3},
URN = {urn:nbn:de:0030-drops-198811},
doi = {10.4230/LIPIcs.SAND.2024.3},
annote = {Keywords: Programmable matter, Self-organizing particle systems, Biologically-inspired distributed algorithms, Local Markov chains, Emergent collective behavior}
}
Published in: LIPIcs, Volume 245, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2022)
Antonio Blanca, Sarah Cannon, and Will Perkins. Fast and Perfect Sampling of Subgraphs and Polymer Systems. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 245, pp. 4:1-4:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{blanca_et_al:LIPIcs.APPROX/RANDOM.2022.4,
author = {Blanca, Antonio and Cannon, Sarah and Perkins, Will},
title = {{Fast and Perfect Sampling of Subgraphs and Polymer Systems}},
booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2022)},
pages = {4:1--4:18},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-249-5},
ISSN = {1868-8969},
year = {2022},
volume = {245},
editor = {Chakrabarti, Amit and Swamy, Chaitanya},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2022.4},
URN = {urn:nbn:de:0030-drops-171261},
doi = {10.4230/LIPIcs.APPROX/RANDOM.2022.4},
annote = {Keywords: Random Sampling, perfect sampling, graphlets, polymer models, spin systems, percolation}
}
Published in: LIPIcs, Volume 145, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019)
Sarah Cannon, Joshua J. Daymude, Cem Gökmen, Dana Randall, and Andréa W. Richa. A Local Stochastic Algorithm for Separation in Heterogeneous Self-Organizing Particle Systems. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 145, pp. 54:1-54:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@InProceedings{cannon_et_al:LIPIcs.APPROX-RANDOM.2019.54,
author = {Cannon, Sarah and Daymude, Joshua J. and G\"{o}kmen, Cem and Randall, Dana and Richa, Andr\'{e}a W.},
title = {{A Local Stochastic Algorithm for Separation in Heterogeneous Self-Organizing Particle Systems}},
booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019)},
pages = {54:1--54:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-125-2},
ISSN = {1868-8969},
year = {2019},
volume = {145},
editor = {Achlioptas, Dimitris and V\'{e}gh, L\'{a}szl\'{o} A.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX-RANDOM.2019.54},
URN = {urn:nbn:de:0030-drops-112696},
doi = {10.4230/LIPIcs.APPROX-RANDOM.2019.54},
annote = {Keywords: Markov chains, Programmable matter, Cluster expansion}
}
Published in: LIPIcs, Volume 81, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2017)
Sarah Cannon, David A. Levin, and Alexandre Stauffer. Polynomial Mixing of the Edge-Flip Markov Chain for Unbiased Dyadic Tilings. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 81, pp. 34:1-34:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)
@InProceedings{cannon_et_al:LIPIcs.APPROX-RANDOM.2017.34,
author = {Cannon, Sarah and Levin, David A. and Stauffer, Alexandre},
title = {{Polynomial Mixing of the Edge-Flip Markov Chain for Unbiased Dyadic Tilings}},
booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2017)},
pages = {34:1--34:21},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-044-6},
ISSN = {1868-8969},
year = {2017},
volume = {81},
editor = {Jansen, Klaus and Rolim, Jos\'{e} D. P. and Williamson, David P. and Vempala, Santosh S.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX-RANDOM.2017.34},
URN = {urn:nbn:de:0030-drops-75830},
doi = {10.4230/LIPIcs.APPROX-RANDOM.2017.34},
annote = {Keywords: Random dyadic tilings, spectral gap, rapid mixing}
}
Published in: LIPIcs, Volume 20, 30th International Symposium on Theoretical Aspects of Computer Science (STACS 2013)
Sarah Cannon, Erik D. Demaine, Martin L. Demaine, Sarah Eisenstat, Matthew J. Patitz, Robert T. Schweller, Scott M Summers, and Andrew Winslow. Two Hands Are Better Than One (up to constant factors): Self-Assembly In The 2HAM vs. aTAM. In 30th International Symposium on Theoretical Aspects of Computer Science (STACS 2013). Leibniz International Proceedings in Informatics (LIPIcs), Volume 20, pp. 172-184, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)
@InProceedings{cannon_et_al:LIPIcs.STACS.2013.172,
author = {Cannon, Sarah and Demaine, Erik D. and Demaine, Martin L. and Eisenstat, Sarah and Patitz, Matthew J. and Schweller, Robert T. and Summers, Scott M and Winslow, Andrew},
title = {{Two Hands Are Better Than One (up to constant factors): Self-Assembly In The 2HAM vs. aTAM}},
booktitle = {30th International Symposium on Theoretical Aspects of Computer Science (STACS 2013)},
pages = {172--184},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-939897-50-7},
ISSN = {1868-8969},
year = {2013},
volume = {20},
editor = {Portier, Natacha and Wilke, Thomas},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2013.172},
URN = {urn:nbn:de:0030-drops-39321},
doi = {10.4230/LIPIcs.STACS.2013.172},
annote = {Keywords: abstract tile assembly model, hierarchical tile assembly model, two-handed tile assembly model, algorithmic self-assembly, DNA computing, biocomputing}
}