2 Search Results for "Domanic, Nevzat Onur"

Document
DOI: 10.4230/LIPIcs.ESA.2025.8
Fast Computation of k-Runs, Parameterized Squares, and Other Generalised Squares

Authors: Yuto Nakashima, Jakub Radoszewski, and Tomasz Waleń

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A k-mismatch square is a string of the form XY where X and Y are two equal-length strings that have at most k mismatches. Kolpakov and Kucherov [Theor. Comput. Sci., 2003] defined two notions of k-mismatch repeats, called k-repetitions and k-runs, each representing a sequence of consecutive k-mismatch squares of equal length. They proposed algorithms for computing k-repetitions and k-runs working in 𝒪(nklog k+output) time for a string of length n over an integer alphabet, where output is the number of the reported repeats. We show that output = 𝒪(nk log k), both in case of k-repetitions and k-runs, which implies that the complexity of their algorithms is actually 𝒪(nk log k). We apply this result to computing parameterized squares. A parameterized square is a string of the form XY such that X and Y parameterized-match, i.e., there exists a bijection f on the alphabet such that f(X) = Y. Two parameterized squares XY and X'Y' are equivalent if they parameterized match. Recently Hamai et al. [SPIRE 2024] showed that a string of length n over an alphabet of size σ contains less than nσ non-equivalent parameterized squares, improving an earlier bound by Kociumaka et al. [Theor. Comput. Sci., 2016]. We apply our bound for k-mismatch repeats to propose an algorithm that reports all non-equivalent parameterized squares in 𝒪(nσ log σ) time. We also show that the number of non-equivalent parameterized squares can be computed in 𝒪(n log n) time. This last algorithm applies to squares under any substring compatible equivalence relation and also to counting squares that are distinct as strings. In particular, this improves upon the 𝒪(nσ)-time algorithm of Gawrychowski et al. [CPM 2023] for counting order-preserving squares that are distinct as strings if σ = ω(log n).
Cite as

Yuto Nakashima, Jakub Radoszewski, and Tomasz Waleń. Fast Computation of k-Runs, Parameterized Squares, and Other Generalised Squares. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 8:1-8:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{nakashima_et_al:LIPIcs.ESA.2025.8,
  author =	{Nakashima, Yuto and Radoszewski, Jakub and Wale\'{n}, Tomasz},
  title =	{{Fast Computation of k-Runs, Parameterized Squares, and Other Generalised Squares}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{8:1--8:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.8},
  URN =		{urn:nbn:de:0030-drops-244768},
  doi =		{10.4230/LIPIcs.ESA.2025.8},
  annote =	{Keywords: string algorithm, k-mismatch square, parameterized square, order-preserving square, maximum gapped repeat}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2016.28
Bipartite Matching with Linear Edge Weights

Authors: Nevzat Onur Domanic, Chi-Kit Lam, and C. Gregory Plaxton

Published in: LIPIcs, Volume 64, 27th International Symposium on Algorithms and Computation (ISAAC 2016)

Abstract
Consider a complete weighted bipartite graph G in which each left vertex u has two real numbers intercept and slope, each right vertex v has a real number quality, and the weight of any edge (u, v) is defined as the intercept of u plus the slope of u times the quality of v. Let m (resp., n) denote the number of left (resp., right) vertices, and assume that m geq n. We develop a fast algorithm for computing a maximum weight matching (MWM) of such a graph. Our algorithm begins by computing an MWM of the subgraph induced by the n right vertices and an arbitrary subset of n left vertices; this step is straightforward to perform in O(n log n) time. The remaining m - n left vertices are then inserted into the graph one at a time, in arbitrary order. As each left vertex is inserted, the MWM is updated. It is relatively straightforward to process each such insertion in O(n) time; our main technical contribution is to improve this time bound to O(sqrt{n} log^2 n). This result has an application related to unit-demand auctions. It is well known that the VCG mechanism yields a suitable solution (allocation and prices) for any unit-demand auction. The graph G may be viewed as encoding a special kind of unit-demand auction in which each left vertex u represents a unit-demand bid, each right vertex v represents an item, and the weight of an edge (u, v) represents the offer of bid u on item v. In this context, our fast insertion algorithm immediately provides an O(sqrt{n} log^2 n)-time algorithm for updating a VCG allocation when a new bid is received. We show how to generalize the insertion algorithm to update (an efficient representation of) the VCG prices within the same time bound.
Cite as

Nevzat Onur Domanic, Chi-Kit Lam, and C. Gregory Plaxton. Bipartite Matching with Linear Edge Weights. In 27th International Symposium on Algorithms and Computation (ISAAC 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 64, pp. 28:1-28:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

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@InProceedings{domanic_et_al:LIPIcs.ISAAC.2016.28,
  author =	{Domanic, Nevzat Onur and Lam, Chi-Kit and Plaxton, C. Gregory},
  title =	{{Bipartite Matching with Linear Edge Weights}},
  booktitle =	{27th International Symposium on Algorithms and Computation (ISAAC 2016)},
  pages =	{28:1--28:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-026-2},
  ISSN =	{1868-8969},
  year =	{2016},
  volume =	{64},
  editor =	{Hong, Seok-Hee},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2016.28},
  URN =		{urn:nbn:de:0030-drops-67989},
  doi =		{10.4230/LIPIcs.ISAAC.2016.28},
  annote =	{Keywords: Weighted bipartite matching, Unit-demand auctions, VCG allocation and pricing}
}
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