6 Search Results for "Garner, Richard"

Document
DOI: 10.4230/LIPIcs.CSL.2026.12
String Diagrams for Closed Symmetric Monoidal Categories

Authors: Callum Reader and Alessandro Di Giorgio

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
We introduce a graphical language for closed symmetric monoidal categories based on an extension of string diagrams with special bracket wires representing internal homs. These bracket wires make the structure of the internal hom functor explicit, allowing standard morphism wires to interact with them through a well-defined set of graphical rules. We establish the soundness and completeness of the diagrammatic calculus, and illustrate its expressiveness through examples drawn from category theory, logic and programming language semantics.
Cite as

Callum Reader and Alessandro Di Giorgio. String Diagrams for Closed Symmetric Monoidal Categories. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 12:1-12:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{reader_et_al:LIPIcs.CSL.2026.12,
  author =	{Reader, Callum and Di Giorgio, Alessandro},
  title =	{{String Diagrams for Closed Symmetric Monoidal Categories}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{12:1--12:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.12},
  URN =		{urn:nbn:de:0030-drops-254369},
  doi =		{10.4230/LIPIcs.CSL.2026.12},
  annote =	{Keywords: diagrammatic languages, logic, lambda calculi}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.28
Resourceful Traces for Commuting Processes

Authors: Matthew Earnshaw, Chad Nester, and Mario Román

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
We show that, when the actions of a Mazurkiewicz trace are considered not merely as atomic but as transformations from a specified type of inputs to a specified type of outputs, we obtain a novel notion of presentation for effectful categories (also known as generalized Freyd categories), a well-known algebraic structure in the semantics of side-effecting computation. Like the usual representation of traces as graphs, our notion of presentation gives rise to a graphical representation of morphisms in effectful categories. We use our presentations to give a construction of the commuting tensor product of free effectful categories, capturing the combination of systems in which the actions of each must commute with one another, while still permitting exchange of resources.
Cite as

Matthew Earnshaw, Chad Nester, and Mario Román. Resourceful Traces for Commuting Processes. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 28:1-28:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{earnshaw_et_al:LIPIcs.CSL.2026.28,
  author =	{Earnshaw, Matthew and Nester, Chad and Rom\'{a}n, Mario},
  title =	{{Resourceful Traces for Commuting Processes}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{28:1--28:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.28},
  URN =		{urn:nbn:de:0030-drops-254522},
  doi =		{10.4230/LIPIcs.CSL.2026.28},
  annote =	{Keywords: Mazurkiewicz traces, premonoidal categories, monoidal categories, effectful categories}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.19
Profile-Guided Field Externalization in an Ahead-Of-Time Compiler

Authors: Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Field externalization is a technique to reduce the footprint of objects by removing fields that most frequently contain zero or null. While researchers have developed ways to bring this optimization into the Java world, these have been limited to research compilers or virtual machines for embedded systems. In this work, we present a novel field externalization technique that uses information from static analysis and profiling to determine externalizable fields. During compilation, we remove those fields and define companion classes. These are used in case of non-default-value writes to the externalized fields. Our approach also correctly handles synchronization to prevent issues in multithreaded environments. We integrated our approach into the modern Java ahead-of-time compiler GraalVM Native Image. We conducted an evaluation on a diverse set of benchmarks that includes standard and microservice-based benchmarks. For standard benchmarks, our approach reduces the total allocated bytes by 2.76% and the maximum resident set size (max-RSS) by 2.55%. For microservice benchmarks, we achieved a reduction of 6.88% for normalized allocated bytes and 2.45% for max-RSS. We computed these improvements via the geometric mean. The median reductions are are 1.46% (alloc. bytes) and 0.22% (max-RSS) in standard benchmarks, as well as 3.63% (alloc. bytes) and 0.20% (max-RSS) in microservice benchmarks.
Cite as

Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck. Profile-Guided Field Externalization in an Ahead-Of-Time Compiler. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 19:1-19:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kloibhofer_et_al:LIPIcs.ECOOP.2025.19,
  author =	{Kloibhofer, Sebastian and Makor, Lukas and Hofer, Peter and Leopoldseder, David and M\"{o}ssenb\"{o}ck, Hanspeter},
  title =	{{Profile-Guided Field Externalization in an Ahead-Of-Time Compiler}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{19:1--19:32},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.19},
  URN =		{urn:nbn:de:0030-drops-233121},
  doi =		{10.4230/LIPIcs.ECOOP.2025.19},
  annote =	{Keywords: compilation, instrumentation, profiling, fields, externalization, memory footprint reduction, memory footprint optimization}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.10
Monotone Weak Distributive Laws over the Lifted Powerset Monad in Categories of Algebras

Authors: Quentin Aristote

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
In both the category of sets and the category of compact Hausdorff spaces, there is a monotone weak distributive law that combines two layers of non-determinism. Noticing the similarity between these two laws, we study whether the latter can be obtained automatically as a weak lifting of the former. This holds partially, but does not generalize to other categories of algebras. We then characterize when exactly monotone weak distributive laws over powerset monads in categories of algebras exist, on the one hand exhibiting a law combining probabilities and non-determinism in compact Hausdorff spaces and showing on the other hand that such laws do not exist in a lot of other cases.
Cite as

Quentin Aristote. Monotone Weak Distributive Laws over the Lifted Powerset Monad in Categories of Algebras. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 10:1-10:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{aristote:LIPIcs.STACS.2025.10,
  author =	{Aristote, Quentin},
  title =	{{Monotone Weak Distributive Laws over the Lifted Powerset Monad in Categories of Algebras}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{10:1--10:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.10},
  URN =		{urn:nbn:de:0030-drops-228356},
  doi =		{10.4230/LIPIcs.STACS.2025.10},
  annote =	{Keywords: weak distributive law, weak extension, weak lifting, iterated distributive law, Yang-Baxter equation, powerset monad, Vietoris monad, Radon monad, Eilenberg-Moore category, regular category, relational extension}
}
Document
DOI: 10.4230/LIPIcs.CALCO.2021.15
Stream Processors and Comodels

Authors: Richard Garner

Published in: LIPIcs, Volume 211, 9th Conference on Algebra and Coalgebra in Computer Science (CALCO 2021)

Abstract
In 2009, Ghani, Hancock and Pattinson gave a coalgebraic characterisation of stream processors A^ℕ → B^ℕ drawing on ideas of Brouwerian constructivism. Their stream processors have an intensional character; in this paper, we give a corresponding coalgebraic characterisation of extensional stream processors, i.e., the set of continuous functions A^ℕ → B^ℕ. Our account sites both our result and that of op. cit. within the apparatus of comodels for algebraic effects originating with Power-Shkaravska.
Cite as

Richard Garner. Stream Processors and Comodels. In 9th Conference on Algebra and Coalgebra in Computer Science (CALCO 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 211, pp. 15:1-15:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{garner:LIPIcs.CALCO.2021.15,
  author =	{Garner, Richard},
  title =	{{Stream Processors and Comodels}},
  booktitle =	{9th Conference on Algebra and Coalgebra in Computer Science (CALCO 2021)},
  pages =	{15:1--15:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-212-9},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{211},
  editor =	{Gadducci, Fabio and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CALCO.2021.15},
  URN =		{urn:nbn:de:0030-drops-153700},
  doi =		{10.4230/LIPIcs.CALCO.2021.15},
  annote =	{Keywords: Comodels, residual comodels, bimodels, streams, stream processors}
}
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