Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)
Leo van Iersel, Mark Jones, Jannik Schestag, Celine Scornavacca, and Mathias Weller. Average-Tree Phylogenetic Diversity of Networks. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 15:1-15:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)
@InProceedings{vaniersel_et_al:LIPIcs.WABI.2025.15, author = {van Iersel, Leo and Jones, Mark and Schestag, Jannik and Scornavacca, Celine and Weller, Mathias}, title = {{Average-Tree Phylogenetic Diversity of Networks}}, booktitle = {25th International Conference on Algorithms for Bioinformatics (WABI 2025)}, pages = {15:1--15:20}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-386-7}, ISSN = {1868-8969}, year = {2025}, volume = {344}, editor = {Brejov\'{a}, Bro\v{n}a and Patro, Rob}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.15}, URN = {urn:nbn:de:0030-drops-239405}, doi = {10.4230/LIPIcs.WABI.2025.15}, annote = {Keywords: phylogenetic diversity, phylogenetic networks, network phylogenetic diversity, algorithms, computational complexity} }
Published in: LIPIcs, Volume 323, 44th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2024)
Christian Komusiewicz and Jannik Schestag. Maximizing Phylogenetic Diversity Under Ecological Constraints: A Parameterized Complexity Study. In 44th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 323, pp. 28:1-28:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{komusiewicz_et_al:LIPIcs.FSTTCS.2024.28, author = {Komusiewicz, Christian and Schestag, Jannik}, title = {{Maximizing Phylogenetic Diversity Under Ecological Constraints: A Parameterized Complexity Study}}, booktitle = {44th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2024)}, pages = {28:1--28:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-355-3}, ISSN = {1868-8969}, year = {2024}, volume = {323}, editor = {Barman, Siddharth and Lasota, S{\l}awomir}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2024.28}, URN = {urn:nbn:de:0030-drops-222175}, doi = {10.4230/LIPIcs.FSTTCS.2024.28}, annote = {Keywords: phylogenetic diversity, food-webs, structural parameterization, color-coding, dynamic programming} }
Published in: LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)
Matthias Bentert, Jannik Schestag, and Frank Sommer. On the Complexity of Finding a Sparse Connected Spanning Subgraph in a Non-Uniform Failure Model. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 4:1-4:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{bentert_et_al:LIPIcs.IPEC.2023.4, author = {Bentert, Matthias and Schestag, Jannik and Sommer, Frank}, title = {{On the Complexity of Finding a Sparse Connected Spanning Subgraph in a Non-Uniform Failure Model}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {4:1--4:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.4}, URN = {urn:nbn:de:0030-drops-194232}, doi = {10.4230/LIPIcs.IPEC.2023.4}, annote = {Keywords: Flexible graph connectivity, NP-hard problem, parameterized complexity, below-guarantee parameterization, treewidth} }
Published in: LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)
Jaroslav Garvardt, Malte Renken, Jannik Schestag, and Mathias Weller. Finding Degree-Constrained Acyclic Orientations. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 19:1-19:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{garvardt_et_al:LIPIcs.IPEC.2023.19, author = {Garvardt, Jaroslav and Renken, Malte and Schestag, Jannik and Weller, Mathias}, title = {{Finding Degree-Constrained Acyclic Orientations}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {19:1--19:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.19}, URN = {urn:nbn:de:0030-drops-194383}, doi = {10.4230/LIPIcs.IPEC.2023.19}, annote = {Keywords: Graph Orientation, Phylogenetic Networks, General Factor, NP-hardness, Parameterized Algorithms, Treewidth} }
Published in: LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)
Mark Jones and Jannik Schestag. How Can We Maximize Phylogenetic Diversity? Parameterized Approaches for Networks. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 30:1-30:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{jones_et_al:LIPIcs.IPEC.2023.30, author = {Jones, Mark and Schestag, Jannik}, title = {{How Can We Maximize Phylogenetic Diversity? Parameterized Approaches for Networks}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {30:1--30:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.30}, URN = {urn:nbn:de:0030-drops-194496}, doi = {10.4230/LIPIcs.IPEC.2023.30}, annote = {Keywords: Phylogenetic Networks, Phylogenetic Diversity, Parameterized Complexity, W-hierarchy, FPT algorithms} }
Published in: LIPIcs, Volume 259, 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)
Christian Komusiewicz, Simone Linz, Nils Morawietz, and Jannik Schestag. On the Complexity of Parameterized Local Search for the Maximum Parsimony Problem. In 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 259, pp. 18:1-18:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{komusiewicz_et_al:LIPIcs.CPM.2023.18, author = {Komusiewicz, Christian and Linz, Simone and Morawietz, Nils and Schestag, Jannik}, title = {{On the Complexity of Parameterized Local Search for the Maximum Parsimony Problem}}, booktitle = {34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)}, pages = {18:1--18:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-276-1}, ISSN = {1868-8969}, year = {2023}, volume = {259}, editor = {Bulteau, Laurent and Lipt\'{a}k, Zsuzsanna}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2023.18}, URN = {urn:nbn:de:0030-drops-179729}, doi = {10.4230/LIPIcs.CPM.2023.18}, annote = {Keywords: phylogenetic trees, parameterized complexity, tree distances, NNI, TBR} }