16 Search Results for "Gross, Jason"

Document
DOI: 10.4230/LIPIcs.SoCG.2026.32
Tensor Computation of Euler Characteristic Functions and Transforms

Authors: Jessi Cisewski-Kehe, Brittany Terese Fasy, Alexander McCleary, and Eli Quist

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
The weighted Euler characteristic transform (WECT) and Euler characteristic function (ECF) have proven to be useful tools in a variety of applications. However, current methods for computing these functions are either not optimized for GPU computation or do not scale to higher-dimensional settings. In this work, we present a tensor-based framework for computing such topological descriptors which is highly optimized for GPU architectures and works in full generality across simplicial and cubical complexes of arbitrary dimension. Experimentally, the framework demonstrates significant speedups over existing methods when computing the WECT and ECF across a variety of two- and three-dimensional datasets. Computation of these transforms is implemented in a publicly available Python package called pyECT.
Cite as

Jessi Cisewski-Kehe, Brittany Terese Fasy, Alexander McCleary, and Eli Quist. Tensor Computation of Euler Characteristic Functions and Transforms. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 32:1-32:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cisewskikehe_et_al:LIPIcs.SoCG.2026.32,
  author =	{Cisewski-Kehe, Jessi and Fasy, Brittany Terese and McCleary, Alexander and Quist, Eli},
  title =	{{Tensor Computation of Euler Characteristic Functions and Transforms}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{32:1--32:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.32},
  URN =		{urn:nbn:de:0030-drops-258380},
  doi =		{10.4230/LIPIcs.SoCG.2026.32},
  annote =	{Keywords: Topological data analysis, weighted Euler characteristic transform, Euler characteristic function, tensor computation, GPU computation}
}
Document
DOI: 10.4230/OASIcs.NINeS.2026.13
In-Kernel Aggregation and Broadcast Acceleration for Distributed Communication

Authors: Jianchang Su, Yifan Zhang, and Wei Zhang

Published in: OASIcs, Volume 139, 1st New Ideas in Networked Systems (NINeS 2026)

Abstract
Broadcasting and aggregation dominate the communication overhead in distributed systems, from machine learning training to data analytics. Current acceleration approaches require specialized hardware (RDMA) or dedicated resources (DPDK), limiting their deployment in commodity clouds. However, we present a counter-intuitive alternative: rather than bypassing the kernel, we move operations into it using eBPF. While this imposes severe constraints including no floating-point, limited memory, and stateless execution, we show these restrictions paradoxically drive innovative protocol designs that yield unexpected benefits. We introduce AggBox, which implements broadcast and aggregation operations entirely within eBPF’s constrained environment. Our key innovations include stateless group acknowledgments for reliability, edge quantization for floating-point aggregation using only integer arithmetic, and tail-call chains that create virtual memory beyond eBPF’s 512-byte stack limit. These designs emerge from and exploit the constraints rather than fighting them. AggBox achieves remarkable performance on commodity hardware: 84.5% reduction in broadcast latency, 43× speedup for MapReduce workloads, and 56.1% faster ML gradient aggregation, all without specialized NICs or dedicated cores. Beyond performance, our work demonstrates that constrained environments can drive fundamental innovation in protocol design, offering insights for future resource-limited and verified systems.
Cite as

Jianchang Su, Yifan Zhang, and Wei Zhang. In-Kernel Aggregation and Broadcast Acceleration for Distributed Communication. In 1st New Ideas in Networked Systems (NINeS 2026). Open Access Series in Informatics (OASIcs), Volume 139, pp. 13:1-13:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{su_et_al:OASIcs.NINeS.2026.13,
  author =	{Su, Jianchang and Zhang, Yifan and Zhang, Wei},
  title =	{{In-Kernel Aggregation and Broadcast Acceleration for Distributed Communication}},
  booktitle =	{1st New Ideas in Networked Systems (NINeS 2026)},
  pages =	{13:1--13:23},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-414-7},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{139},
  editor =	{Argyraki, Katerina and Panda, Aurojit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.NINeS.2026.13},
  URN =		{urn:nbn:de:0030-drops-255981},
  doi =		{10.4230/OASIcs.NINeS.2026.13},
  annote =	{Keywords: eBPF, distributed communication, broadcast, aggregation, in-kernel processing, XDP}
}
Document
DOI: 10.4230/OASIcs.NINeS.2026.24
SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing

Authors: Siddhant Ray, Xi Jiang, Jack Luo, Nick Feamster, and Junchen Jiang

Published in: OASIcs, Volume 139, 1st New Ideas in Networked Systems (NINeS 2026)

Abstract
Low Latency, Low Loss, and Scalable Throughput (L4S), as an emerging router-queue management technique, has seen steady deployment in the industry. An L4S-enabled router assigns each packet to the queue based on the packet header marking. Currently, L4S employs per-flow queue selection, i.e., all packets of a flow are marked the same way and thus use the same queues, even though each packet is marked separately. However, this may hurt tail latency and latency-sensitive applications because transient congestion and queue buildups may only affect a fraction of packets in a flow. We present SwiftQueue, a new L4S queue-selection strategy in which a sender uses a novel per-packet latency predictor to pinpoint which packets likely have latency spikes or drops. The insight is that many packet-level latency variations result from complex interactions among recent packets at shared router queues. Yet, these intricate packet-level latency patterns are hard to learn efficiently by traditional models. Instead, SwiftQueue uses a custom Transformer, which is well-studied for its expressiveness on sequential patterns, to predict the next packet’s latency based on the latencies of recently received ACKs. Based on the predicted latency of each outgoing packet, SwiftQueue’s sender dynamically marks the L4S packet header to assign packets to potentially different queues, even within the same flow. Using real network traces, we show that SwiftQueue is 45-65% more accurate in predicting latency and its variations than state-of-art methods. Based on its latency prediction, SwiftQueue reduces the tail latency for L4S-enabled flows by 36-45%, compared with the existing L4S queue-selection method.
Cite as

Siddhant Ray, Xi Jiang, Jack Luo, Nick Feamster, and Junchen Jiang. SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing. In 1st New Ideas in Networked Systems (NINeS 2026). Open Access Series in Informatics (OASIcs), Volume 139, pp. 24:1-24:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ray_et_al:OASIcs.NINeS.2026.24,
  author =	{Ray, Siddhant and Jiang, Xi and Luo, Jack and Feamster, Nick and Jiang, Junchen},
  title =	{{SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing}},
  booktitle =	{1st New Ideas in Networked Systems (NINeS 2026)},
  pages =	{24:1--24:29},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-414-7},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{139},
  editor =	{Argyraki, Katerina and Panda, Aurojit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.NINeS.2026.24},
  URN =		{urn:nbn:de:0030-drops-256093},
  doi =		{10.4230/OASIcs.NINeS.2026.24},
  annote =	{Keywords: Latency prediction, L4S Queue Management}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2026.10
Bounding the Makespan of Transaction Schedules

Authors: Tim Baccaert, Brecht Vandevoort, and Bas Ketsman

Published in: LIPIcs, Volume 365, 29th International Conference on Database Theory (ICDT 2026)

Abstract
The performance of transactional database systems is typically evaluated by measuring the amount of transactions they can commit to the database per second. However, fairly measuring this for the same workload on different systems is not trivial. It is therefore relevant to formalize schedule efficiency, investigate the space of all possible efficient schedules, and identify whether there is any room for improvement. Prior transaction theory largely centers on decision problems relating to safety, such as the serializability, robustness, and allocation problems. Most pertinently, these problems take already scheduled transactions as input, and do not directly consider the efficiency of those schedules. In this work, we define schedules as assignments of operations on objects to discrete points in time. This allows us to quantify efficiency as the elapsed duration between the schedule’s beginning and end, more commonly known as the makespan in the scheduling literature. We establish that, given some set of transactions and a desired makespan, it is NP-complete to decide if there exists a conflict serializable schedule which is bounded by that makespan. We additionally provide an instance optimal algorithm for scheduling transaction sets with a single contention point, that is, exactly one object may appear in conflicting operations. Lastly, we give worst-case optimal bounds on the makespan, meaning that schedules can never exceed this bound, and for the worst transaction sets, the bound is optimal.
Cite as

Tim Baccaert, Brecht Vandevoort, and Bas Ketsman. Bounding the Makespan of Transaction Schedules. In 29th International Conference on Database Theory (ICDT 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 365, pp. 10:1-10:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{baccaert_et_al:LIPIcs.ICDT.2026.10,
  author =	{Baccaert, Tim and Vandevoort, Brecht and Ketsman, Bas},
  title =	{{Bounding the Makespan of Transaction Schedules}},
  booktitle =	{29th International Conference on Database Theory (ICDT 2026)},
  pages =	{10:1--10:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-413-0},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{365},
  editor =	{ten Cate, Balder and Funk, Maurice},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2026.10},
  URN =		{urn:nbn:de:0030-drops-256242},
  doi =		{10.4230/LIPIcs.ICDT.2026.10},
  annote =	{Keywords: Transactions, Scheduling, Discrete Optimization, Complexity}
}
Document
Research
DOI: 10.4230/TGDK.3.3.4
Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web

Authors: Florian Ruosch, Cristina Sarasua, and Abraham Bernstein

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
In Argument Mining, predicting argumentative relations between texts (or spans) remains one of the most challenging aspects, even more so in the cross-document setting. This paper makes three key contributions to advance research in this domain. We first extend an existing dataset, the Sci-Arg corpus, by annotating it with explicit inter-document argumentative relations, thereby allowing arguments to be distributed over several documents forming an Argument Web; these new annotations are published using Semantic Web technologies (RDF, OWL). Second, we explore and evaluate three automated approaches for predicting these inter-document argumentative relations, establishing critical baselines on the new dataset. We find that a simple classifier based on discourse indicators with access to context outperforms neural methods. Third, we conduct a comparative analysis of these approaches for both intra- and inter-document settings, identifying statistically significant differences in results that indicate the necessity of distinguishing between these two scenarios. Our findings highlight significant challenges in this complex domain and open crucial avenues for future research on the Argument Web of Science, particularly for those interested in leveraging Semantic Web technologies and knowledge graphs to understand scholarly discourse. With this, we provide the first stepping stones in the form of a benchmark dataset, three baseline methods, and an initial analysis for a systematic exploration of this field relevant to the Web of Data and Science.
Cite as

Florian Ruosch, Cristina Sarasua, and Abraham Bernstein. Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 4:1-4:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ruosch_et_al:TGDK.3.3.4,
  author =	{Ruosch, Florian and Sarasua, Cristina and Bernstein, Abraham},
  title =	{{Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:33},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.4},
  URN =		{urn:nbn:de:0030-drops-252159},
  doi =		{10.4230/TGDK.3.3.4},
  annote =	{Keywords: Argument Mining, Large Language Models, Knowledge Graphs, Link Prediction}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.35
Verifying an Efficient Algorithm for Computing Bernoulli Numbers

Authors: Manuel Eberl and Peter Lammich

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
The Bernoulli numbers B_k are a sequence of rational numbers that is ubiquitous in mathematics, but difficult to compute efficiently (compared to e.g. approximating π). In 2008, Harvey gave the currently fastest known practical way for computing them: his algorithm computes B_k mod p in time O(p log^{1 + o(1)} p). By doing this for O(k) many small primes p in parallel and then combining the results with the Chinese Remainder Theorem, one recovers the value of B_k as a rational number in O(k² log^{2 + o(1)} k) time. One advantage of this approach is that the expensive part of the algorithm is highly parallelisable and has very low memory requirements. This algorithm still holds the world record with its computation of B_{10⁸}. We give a verified efficient LLVM implementation of this algorithm. This was achieved by formalising the necessary mathematical background theory in Isabelle/HOL, proving an abstract version of the algorithm correct, and refining this abstract version down to LLVM using Lammich’s Isabelle-LLVM framework, including many low-level optimisations. The performance of the resulting LLVM code is comparable with Harvey’s original unverified and hand-optimised C++ implementation.
Cite as

Manuel Eberl and Peter Lammich. Verifying an Efficient Algorithm for Computing Bernoulli Numbers. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 35:1-35:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{eberl_et_al:LIPIcs.ITP.2025.35,
  author =	{Eberl, Manuel and Lammich, Peter},
  title =	{{Verifying an Efficient Algorithm for Computing Bernoulli Numbers}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{35:1--35:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.35},
  URN =		{urn:nbn:de:0030-drops-246331},
  doi =		{10.4230/LIPIcs.ITP.2025.35},
  annote =	{Keywords: Bernoulli numbers, LLVM, verification, Isabelle, Chinese remainder theorem, modular arithmetic, Montgomery arithmetic}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.33
Scott’s Representation Theorem and the Univalent Karoubi Envelope

Authors: Arnoud van der Leer, Kobe Wullaert, and Benedikt Ahrens

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
Lambek and Scott constructed a correspondence between simply-typed lambda calculi and Cartesian closed categories. Scott’s Representation Theorem is a cousin to this result for untyped lambda calculi. It states that every untyped lambda calculus arises from a reflexive object in some category. We present a formalization of Scott’s Representation Theorem in univalent foundations, in the (Rocq-)UniMath library. Specifically, we implement two proofs of that theorem, one by Scott and one by Hyland. We also explain the role of the Karoubi envelope - a categorical construction - in the proofs and the impact the chosen foundation has on this construction. Finally, we report on some automation we have implemented for the reduction of λ-terms.
Cite as

Arnoud van der Leer, Kobe Wullaert, and Benedikt Ahrens. Scott’s Representation Theorem and the Univalent Karoubi Envelope. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 33:1-33:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{vanderleer_et_al:LIPIcs.ITP.2025.33,
  author =	{van der Leer, Arnoud and Wullaert, Kobe and Ahrens, Benedikt},
  title =	{{Scott’s Representation Theorem and the Univalent Karoubi Envelope}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{33:1--33:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.33},
  URN =		{urn:nbn:de:0030-drops-246318},
  doi =		{10.4230/LIPIcs.ITP.2025.33},
  annote =	{Keywords: Lambda calculi, algebraic theories, categorical semantics, Karoubi envelope, formalization, Rocq-UniMath, univalent foundations}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.20
Formalizing Colimits in 𝒞at

Authors: Mario Carneiro and Emily Riehl

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
Certain results involving "higher structures" are not currently accessible to computer formalization because the prerequisite ∞-category theory has not been formalized. To support future work on formalizing ∞-category theory in Lean’s mathematics library, we formalize some fundamental constructions involving the 1-category of categories. Specifically, we construct the left adjoint to the nerve embedding of categories into simplicial sets, defining the homotopy category functor. We prove further that this adjunction is reflective, which allows us to conclude that 𝒞at has colimits. To our knowledge this is the first formalized proof that the nerve functor is a fully faithful right adjoint and that the category of categories is cocomplete.
Cite as

Mario Carneiro and Emily Riehl. Formalizing Colimits in 𝒞at. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 20:1-20:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{carneiro_et_al:LIPIcs.ITP.2025.20,
  author =	{Carneiro, Mario and Riehl, Emily},
  title =	{{Formalizing Colimits in 𝒞at}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{20:1--20:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.20},
  URN =		{urn:nbn:de:0030-drops-246186},
  doi =		{10.4230/LIPIcs.ITP.2025.20},
  annote =	{Keywords: category theory, infinity-category theory, nerve, simplicial set, colimit}
}
Document
DOI: 10.4230/LIPIcs.FSCD.2025.33
Solving Guarded Domain Equations in Presheaves over Ordinals and Mechanizing It

Authors: Sergei Stepanenko and Amin Timany

Published in: LIPIcs, Volume 337, 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)

Abstract
Constructing solutions to recursive domain equations is a well-known, important problem in the study of programs and programming languages. Mathematically speaking, the problem is finding a fixed point (up to isomorphism) of a suitable functor over a suitable category. A particularly useful instance, inspired by the step-indexing technique, is where the functor is over (a subcategory of) the category of presheaves over the ordinal ω and the functors are locally-contractive, also known as guarded functors. This corresponds to step-indexing over natural numbers. However, for certain problems, e.g., when dealing with infinite non-determinism, one needs to employ trans-finite step-indexing, i.e., consider presheaf categories over higher ordinals. Prior work on trans-finite step-indexing either only considers a very narrow class of functors over a particularly restricted subcategory of presheaves over higher ordinals, or treats the problem very generally working with sheaves over an arbitrary complete Heyting algebra with a well-founded basis. In this paper we present a solution to the guarded domain equations problem over all guarded functors over the category of presheaves over ordinal numbers, as well as its mechanization in the Rocq Prover. As the categories of sheaves and presheaves over ordinals are equivalent, our main contribution is simplifying prior work from the setting of the category of sheaves to the setting of the category of presheaves and mechanizing it - presheaves are more amenable to mechanization in a proof assistant.
Cite as

Sergei Stepanenko and Amin Timany. Solving Guarded Domain Equations in Presheaves over Ordinals and Mechanizing It. In 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 337, pp. 33:1-33:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{stepanenko_et_al:LIPIcs.FSCD.2025.33,
  author =	{Stepanenko, Sergei and Timany, Amin},
  title =	{{Solving Guarded Domain Equations in Presheaves over Ordinals and Mechanizing It}},
  booktitle =	{10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)},
  pages =	{33:1--33:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-374-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{337},
  editor =	{Fern\'{a}ndez, Maribel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2025.33},
  URN =		{urn:nbn:de:0030-drops-236486},
  doi =		{10.4230/LIPIcs.FSCD.2025.33},
  annote =	{Keywords: Domain Equations, Guarded Fixed Points, Fixed Points, Category Theory, Rocq, Presheaves, Ordinals}
}
Document
DOI: 10.4230/LIPIcs.FSCD.2025.27
What Does It Take to Certify a Conversion Checker?

Authors: Meven Lennon-Bertrand

Published in: LIPIcs, Volume 337, 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)

Abstract
We report on a detailed exploration of the properties of conversion (definitional equality) in dependent type theory, with the goal of certifying decision procedures for it. While in that context the property of normalisation has attracted the most light, we instead emphasize the importance of injectivity properties, showing that they alone are both crucial and sufficient to certify most desirable properties of conversion checkers. We also explore the certification of a fully untyped conversion checker, with respect to a typed specification, and show that the story is mostly unchanged, although the exact injectivity properties needed are subtly different.
Cite as

Meven Lennon-Bertrand. What Does It Take to Certify a Conversion Checker?. In 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 337, pp. 27:1-27:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lennonbertrand:LIPIcs.FSCD.2025.27,
  author =	{Lennon-Bertrand, Meven},
  title =	{{What Does It Take to Certify a Conversion Checker?}},
  booktitle =	{10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)},
  pages =	{27:1--27:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-374-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{337},
  editor =	{Fern\'{a}ndez, Maribel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2025.27},
  URN =		{urn:nbn:de:0030-drops-236428},
  doi =		{10.4230/LIPIcs.FSCD.2025.27},
  annote =	{Keywords: Dependent types, Bidirectional typing, Certified software}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.12
Automatic Goal Clone Detection in Rocq

Authors: Ali Ghanbari

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Proof engineering in Rocq is a labor-intensive process, and as proof developments grow in size, redundancy and maintainability become challenges. One such redundancy is goal cloning, i.e., proving α-equivalent goals multiple times, leading to wasted effort and bloated proof scripts. In this paper, we introduce clone-finder, a novel technique for detecting goal clones in Rocq proofs. By leveraging the formal notion of α-equivalence for Gallina terms, clone-finder systematically identifies duplicated proof goals across large Rocq codebases. We evaluate clone-finder on 40 real-world Rocq projects from the CoqGym dataset. Our results reveal that each project contains an average of 27.73 instances of goal clone. We observed that the clones can be categorized as either exact goal duplication, generalization, or α-equivalent goals with different proofs, each signifying varying levels duplicate effort. Our findings highlight significant untapped potential for proof reuse in Rocq-based formal verification projects, paving the way for future improvements in automated proof engineering.
Cite as

Ali Ghanbari. Automatic Goal Clone Detection in Rocq. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghanbari:LIPIcs.ECOOP.2025.12,
  author =	{Ghanbari, Ali},
  title =	{{Automatic Goal Clone Detection in Rocq}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.12},
  URN =		{urn:nbn:de:0030-drops-233055},
  doi =		{10.4230/LIPIcs.ECOOP.2025.12},
  annote =	{Keywords: Clone Detection, Goal, Proof, Rocq, Gallina}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
DOI: 10.4230/LIPIcs.ITP.2022.17
Accelerating Verified-Compiler Development with a Verified Rewriting Engine

Authors: Jason Gross, Andres Erbsen, Jade Philipoom, Miraya Poddar-Agrawal, and Adam Chlipala

Published in: LIPIcs, Volume 237, 13th International Conference on Interactive Theorem Proving (ITP 2022)

Abstract
Compilers are a prime target for formal verification, since compiler bugs invalidate higher-level correctness guarantees, but compiler changes may become more labor-intensive to implement, if they must come with proof patches. One appealing approach is to present compilers as sets of algebraic rewrite rules, which a generic engine can apply efficiently. Now each rewrite rule can be proved separately, with no need to revisit past proofs for other parts of the compiler. We present the first realization of this idea, in the form of a framework for the Coq proof assistant. Our new Coq command takes normal proved theorems and combines them automatically into fast compilers with proofs. We applied our framework to improve the Fiat Cryptography toolchain for generating cryptographic arithmetic, producing an extracted command-line compiler that is about 1000× faster while actually featuring simpler compiler-specific proofs.
Cite as

Jason Gross, Andres Erbsen, Jade Philipoom, Miraya Poddar-Agrawal, and Adam Chlipala. Accelerating Verified-Compiler Development with a Verified Rewriting Engine. In 13th International Conference on Interactive Theorem Proving (ITP 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 237, pp. 17:1-17:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{gross_et_al:LIPIcs.ITP.2022.17,
  author =	{Gross, Jason and Erbsen, Andres and Philipoom, Jade and Poddar-Agrawal, Miraya and Chlipala, Adam},
  title =	{{Accelerating Verified-Compiler Development with a Verified Rewriting Engine}},
  booktitle =	{13th International Conference on Interactive Theorem Proving (ITP 2022)},
  pages =	{17:1--17:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-252-5},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{237},
  editor =	{Andronick, June and de Moura, Leonardo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2022.17},
  URN =		{urn:nbn:de:0030-drops-167262},
  doi =		{10.4230/LIPIcs.ITP.2022.17},
  annote =	{Keywords: compiler verification, rewriting engines, cryptography}
}
Document
DOI: 10.4230/LIPIcs.ITP.2022.18
Automatic Test-Case Reduction in Proof Assistants: A Case Study in Coq

Authors: Jason Gross, Théo Zimmermann, Miraya Poddar-Agrawal, and Adam Chlipala

Published in: LIPIcs, Volume 237, 13th International Conference on Interactive Theorem Proving (ITP 2022)

Abstract
As the adoption of proof assistants increases, there is a need for efficiency in identifying, documenting, and fixing compatibility issues that arise from proof-assistant evolution. We present the Coq Bug Minimizer, a tool for reproducing buggy behavior with minimal and standalone files, integrated with coqbot to trigger automatically on failures from Coq’s reverse dependency compatibility testing. Our tool eliminates the overhead of having to download, set up, compile, and then explore and understand large developments, enabling Coq developers to easily obtain modular test-case files for fast experimentation. In this paper, we describe insights about how test-case reduction is different in Coq than in traditional compilers. We expect that our insights will generalize to other proof assistants. We evaluate the Coq Bug Minimizer on over 150 compatibility testing failures. Our tool succeeds in reducing failures to smaller test cases roughly 75% of the time. The minimizer produces a fully standalone test case 89% of the time, and it is on average about one-third the size of the original test. The average reduced test case compiles in 1.25 seconds, with 75% taking under half a second.
Cite as

Jason Gross, Théo Zimmermann, Miraya Poddar-Agrawal, and Adam Chlipala. Automatic Test-Case Reduction in Proof Assistants: A Case Study in Coq. In 13th International Conference on Interactive Theorem Proving (ITP 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 237, pp. 18:1-18:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{gross_et_al:LIPIcs.ITP.2022.18,
  author =	{Gross, Jason and Zimmermann, Th\'{e}o and Poddar-Agrawal, Miraya and Chlipala, Adam},
  title =	{{Automatic Test-Case Reduction in Proof Assistants: A Case Study in Coq}},
  booktitle =	{13th International Conference on Interactive Theorem Proving (ITP 2022)},
  pages =	{18:1--18:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-252-5},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{237},
  editor =	{Andronick, June and de Moura, Leonardo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2022.18},
  URN =		{urn:nbn:de:0030-drops-167273},
  doi =		{10.4230/LIPIcs.ITP.2022.18},
  annote =	{Keywords: debugging, automatic test-case reduction, Coq, bug minimizer}
}
Document
DOI: 10.4230/LIPIcs.ITP.2019.26
Ornaments for Proof Reuse in Coq

Authors: Talia Ringer, Nathaniel Yazdani, John Leo, and Dan Grossman

Published in: LIPIcs, Volume 141, 10th International Conference on Interactive Theorem Proving (ITP 2019)

Abstract
Ornaments express relations between inductive types with the same inductive structure. We implement fully automatic proof reuse for a particular class of ornaments in a Coq plugin, and show how such a tool can give programmers the rewards of using indexed inductive types while automating away many of the costs. The plugin works directly on Coq code; it is the first ornamentation tool for a non-embedded dependently typed language. It is also the first tool to automatically identify ornaments: To lift a function or proof, the user must provide only the source type, the destination type, and the source function or proof. In taking advantage of the mathematical properties of ornaments, our approach produces faster functions and smaller terms than a more general approach to proof reuse in Coq.
Cite as

Talia Ringer, Nathaniel Yazdani, John Leo, and Dan Grossman. Ornaments for Proof Reuse in Coq. In 10th International Conference on Interactive Theorem Proving (ITP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 141, pp. 26:1-26:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{ringer_et_al:LIPIcs.ITP.2019.26,
  author =	{Ringer, Talia and Yazdani, Nathaniel and Leo, John and Grossman, Dan},
  title =	{{Ornaments for Proof Reuse in Coq}},
  booktitle =	{10th International Conference on Interactive Theorem Proving (ITP 2019)},
  pages =	{26:1--26:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-122-1},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{141},
  editor =	{Harrison, John and O'Leary, John and Tolmach, Andrew},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2019.26},
  URN =		{urn:nbn:de:0030-drops-110816},
  doi =		{10.4230/LIPIcs.ITP.2019.26},
  annote =	{Keywords: ornaments, proof reuse, proof automation}
}
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