30 Search Results for "Marshall, Andrew M."

Document
DOI: 10.4230/LIPIcs.CSL.2026.24
Well-Founded Coalgebras Meet Kőnig’s Lemma

Authors: Henning Urbat and Thorsten Wißmann

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
Kőnig’s lemma is a fundamental result about trees with countless applications in mathematics and computer science. In contrapositive form, it states that if a tree is finitely branching and well-founded (i.e. has no infinite paths), then it is finite. We present a coalgebraic version of Kőnig’s lemma featuring two dimensions of generalization: from finitely branching trees to coalgebras for a finitary endofunctor H, and from the base category of sets to a locally finitely presentable category ℂ, such as the category of posets, nominal sets, or convex sets. Our coalgebraic Kőnig’s lemma states that, under mild assumptions on ℂ and H, every well-founded coalgebra for H is the directed join of its well-founded subcoalgebras with finitely generated state space - in particular, the category of well-founded coalgebras is locally presentable. As applications, we derive versions of Kőnig’s lemma for graphs in a topos as well as for nominal and convex transition systems. Additionally, we show that the key construction underlying the proof gives rise to two simple constructions of the initial algebra (equivalently, the final recursive coalgebra) for the functor H: The initial algebra is both the colimit of all well-founded and of all recursive coalgebras with finitely presentable state space. Remarkably, this result holds even in settings where well-founded coalgebras form a proper subclass of recursive ones. The first construction of the initial algebra is entirely new, while for the second one our approach yields a short and transparent new correctness proof.
Cite as

Henning Urbat and Thorsten Wißmann. Well-Founded Coalgebras Meet Kőnig’s Lemma. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 24:1-24:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{urbat_et_al:LIPIcs.CSL.2026.24,
  author =	{Urbat, Henning and Wi{\ss}mann, Thorsten},
  title =	{{Well-Founded Coalgebras Meet K\H{o}nig’s Lemma}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{24:1--24:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.24},
  URN =		{urn:nbn:de:0030-drops-254485},
  doi =		{10.4230/LIPIcs.CSL.2026.24},
  annote =	{Keywords: K\H{o}nig’s Lemma, Well-Foundedness, Coalgebra}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.15
How to Use Nondeterminism in Cryptography

Authors: Marshall Ball and Peter Crawford-Kahrl

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Nondeterministic reductions have yielded powerful results in the theory of computational complexity, yet are effectively useless in a cryptographic context. The reason for this is simple, a nondeterministic polynomial time adversary can trivially break almost any cryptographic primitive by simply guessing the "key." In order to use this powerful nondeterministic tool kit in the cryptographic context, we initiate the study of cryptography against adversaries with limited nondeterminism: polynomial time nondeterministic algorithms that are restricted to just a few bits of nondeterminism. We demonstrate that limited nondeterministic security is sufficient to prove two foundational results that have eluded our grasp for decades: dream hardness amplification, and extracting ω(log n) hardcore bits.
Cite as

Marshall Ball and Peter Crawford-Kahrl. How to Use Nondeterminism in Cryptography. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 15:1-15:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ball_et_al:LIPIcs.ITCS.2026.15,
  author =	{Ball, Marshall and Crawford-Kahrl, Peter},
  title =	{{How to Use Nondeterminism in Cryptography}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{15:1--15:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.15},
  URN =		{urn:nbn:de:0030-drops-253024},
  doi =		{10.4230/LIPIcs.ITCS.2026.15},
  annote =	{Keywords: limited nondeterminism, cryptography, computational complexity, hardness amplification, pseudorandom generators, hardcore bits}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.76
Ideal Private Simultaneous Messages Schemes and Their Applications

Authors: Keitaro Hiwatashi and Reo Eriguchi

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Private Simultaneous Messages (PSM) is a minimal model for secure computation, where two parties, Alice and Bob, have private inputs x,y and a shared random string. Each of them sends a single message to an external party, Charlie, who can compute f(x,y) for a public function f but learns nothing else. The problem of narrowing the gap between upper and lower bounds on the communication complexity of PSM has been widely studied, but the gap still remains exponential. In this work, we study the communication complexity of PSM from a different perspective and introduce a special class of PSM, referred to as ideal PSM, in which each party’s message length attains the minimum, that is, their messages are taken from the same domain as inputs. We initiate a systematic study of ideal PSM with a complete characterization, several positive results, and applications. First, we provide a characterization of the class of functions that admit ideal PSM, based on permutation groups acting on the input domain. This characterization allows us to derive asymptotic upper bounds on the total number of such functions and a complete list for small domains. We also present several infinite families of functions of practical interest that admit ideal PSM. Interestingly, by simply restricting the input domains of these ideal PSM schemes, we can recover most of the existing PSM schemes that achieve the best known communication complexity in various computation models. As applications, we show that these ideal PSM schemes yield novel communication-efficient PSM schemes for functions with sparse or dense truth-tables and those with low-rank truth-tables. Furthermore, we obtain a PSM scheme for general functions that improves the constant factor in the dominant term of the best known communication complexity. An additional advantage is that our scheme simplifies the existing construction by avoiding the hierarchical design of internally invoking PSM schemes for smaller functions.
Cite as

Keitaro Hiwatashi and Reo Eriguchi. Ideal Private Simultaneous Messages Schemes and Their Applications. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 76:1-76:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{hiwatashi_et_al:LIPIcs.ITCS.2026.76,
  author =	{Hiwatashi, Keitaro and Eriguchi, Reo},
  title =	{{Ideal Private Simultaneous Messages Schemes and Their Applications}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{76:1--76:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.76},
  URN =		{urn:nbn:de:0030-drops-253633},
  doi =		{10.4230/LIPIcs.ITCS.2026.76},
  annote =	{Keywords: secure computation, private simultaneous messages, communication complexity}
}
Document
DOI: 10.4230/LIPIcs.OPODIS.2025.9
Contention-Aware Cooperation

Authors: Timothé Albouy, Davide Frey, Mathieu Gestin, Michel Raynal, and François Taïani

Published in: LIPIcs, Volume 361, 29th International Conference on Principles of Distributed Systems (OPODIS 2025)

Abstract
As shown by Reliable Broadcast and Consensus, cooperation among a set of independent computing entities (sequential processes) is crucial in fault-tolerant distributed computing. Considering n-process asynchronous message-passing systems where some processes may be Byzantine, this paper introduces a novel cooperation abstraction, Contention-Aware Cooperation (CAC). While Reliable Broadcast is a one-to-n cooperation abstraction and Consensus is an n-to-n cooperation abstraction, CAC is a d-to-n cooperation abstraction where d (1 ≤ d ≤ n) varies with each run and remains unknown to the processes. Correct processes accept the same set of 𝓁 pairs ⟨ v,i ⟩ (v is the value proposed by p_i) from the d proposer processes, where 1 ≤ 𝓁 ≤ d and (as d) 𝓁 remains unknown to the processes (except in specific cases). Those 𝓁 values are accepted one at a time, potentially in different orders at each process. In addition, CAC provides each process with an imperfect oracle that provides insights into the values that they may accept in the future. Interestingly, the CAC abstraction is particularly efficient in favorable circumstances, when the oracle becomes accurate, which processes can detect. To illustrate its practical utility, the paper details two applications leveraging CAC: a fast consensus implementation optimized for low contention (named Cascading Consensus), and a novel naming problem that can be solved under full asynchrony. All algorithms presented require signatures.
Cite as

Timothé Albouy, Davide Frey, Mathieu Gestin, Michel Raynal, and François Taïani. Contention-Aware Cooperation. In 29th International Conference on Principles of Distributed Systems (OPODIS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 361, pp. 9:1-9:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{albouy_et_al:LIPIcs.OPODIS.2025.9,
  author =	{Albouy, Timoth\'{e} and Frey, Davide and Gestin, Mathieu and Raynal, Michel and Ta\"{i}ani, Fran\c{c}ois},
  title =	{{Contention-Aware Cooperation}},
  booktitle =	{29th International Conference on Principles of Distributed Systems (OPODIS 2025)},
  pages =	{9:1--9:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-409-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{361},
  editor =	{Arusoaie, Andrei and Onica, Emanuel and Spear, Michael and Tucci-Piergiovanni, Sara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.OPODIS.2025.9},
  URN =		{urn:nbn:de:0030-drops-251823},
  doi =		{10.4230/LIPIcs.OPODIS.2025.9},
  annote =	{Keywords: Agreement, Asynchronous message-passing system, Byzantine processes, Conflict detection, Consensus, Cooperation abstraction, Distributed computing, Fault tolerance, Optimistically terminating consensus, Short-naming}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.37
Communication Complexity of Equality and Error-Correcting Codes

Authors: Dale Jacobs, John Jeang, Vladimir Podolskii, Morgan Prior, and Ilya Volkovich

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
We study the public-coin randomized communication complexity of the equality function. The communication complexity of this function is known to be low when the error probability is constant and the players have access to many random bits. The complexity grows, however, if the allowed error probability and the amount of randomness are restricted. We show that public-coin randomized protocols for equality and error-correcting codes are essentially the same object. That is, given a protocol for equality, we can construct a code, and vice versa. We substantially extend the protocol-implies-code direction: any protocol computing a function with a large fooling set can be converted into an error-correcting code. As a corollary, we show that among functions with a fooling set of size s, equality on log s bits has the least randomized communication complexity, regardless of the restrictions on the error probability and the amount of randomness. Finally, we use the connection to error-correcting codes to analyze the randomized communication complexity of equality for varying restrictions on the error probability and the amount of randomness. In most cases, we provide tight bounds. We pinpoint the setting in which tight bounds are still unknown.
Cite as

Dale Jacobs, John Jeang, Vladimir Podolskii, Morgan Prior, and Ilya Volkovich. Communication Complexity of Equality and Error-Correcting Codes. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 37:1-37:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jacobs_et_al:LIPIcs.FSTTCS.2025.37,
  author =	{Jacobs, Dale and Jeang, John and Podolskii, Vladimir and Prior, Morgan and Volkovich, Ilya},
  title =	{{Communication Complexity of Equality and Error-Correcting Codes}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{37:1--37:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.37},
  URN =		{urn:nbn:de:0030-drops-251175},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.37},
  annote =	{Keywords: communication complexity, randomized communication complexity, error-correcting codes}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.37
Show Me Your Best Side: Characteristics of User-Preferred Perspectives for 3D Graph Drawings

Authors: Lucas Joos, Gavin J. Mooney, Maximilian T. Fischer, Daniel A. Keim, Falk Schreiber, Helen C. Purchase, and Karsten Klein

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
The visual analysis of graphs in 3D has become increasingly popular, accelerated by the rise of immersive technology, such as augmented and virtual reality. Unlike 2D drawings, 3D graph layouts are highly viewpoint-dependent, making perspective selection critical for revealing structural and relational patterns. Despite its importance, there is limited empirical evidence guiding what constitutes an effective or preferred viewpoint from the user’s perspective. In this paper, we present a systematic investigation into user-preferred viewpoints in 3D graph visualisations. We conducted a controlled study with 23 participants in a virtual reality environment, where users selected their most and least preferred viewpoints for 36 different graphs varying in size and layout. From this data, enriched by qualitative feedback, we distil common strategies underlying viewpoint choice. We further analyse the alignment of user preferences with classical 2D aesthetic criteria (e.g., Crossings), 3D-specific measures (e.g., Node-Node Occlusion), and introduce a novel measure capturing the perceivability of a graph’s principal axes (Isometric Viewpoint Deviation). Our data-driven analysis indicates that Stress, Crossings, Gabriel Ratio, Edge-Node Overlap, and Isometric Viewpoint Deviation are key indicators of viewpoint preference. Beyond our findings, we contribute a publicly available dataset consisting of the graphs and computed aesthetic measures, supporting further research and the development of viewpoint evaluation measures for 3D graph drawing.
Cite as

Lucas Joos, Gavin J. Mooney, Maximilian T. Fischer, Daniel A. Keim, Falk Schreiber, Helen C. Purchase, and Karsten Klein. Show Me Your Best Side: Characteristics of User-Preferred Perspectives for 3D Graph Drawings. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 37:1-37:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{joos_et_al:LIPIcs.GD.2025.37,
  author =	{Joos, Lucas and Mooney, Gavin J. and Fischer, Maximilian T. and Keim, Daniel A. and Schreiber, Falk and Purchase, Helen C. and Klein, Karsten},
  title =	{{Show Me Your Best Side: Characteristics of User-Preferred Perspectives for 3D Graph Drawings}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{37:1--37:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.37},
  URN =		{urn:nbn:de:0030-drops-250236},
  doi =		{10.4230/LIPIcs.GD.2025.37},
  annote =	{Keywords: Graph Aesthetics, Immersive 3D, Node-Link Diagrams, Empirical Evaluation}
}
Document
DOI: 10.4230/LIPIcs.DISC.2025.6
Hierarchical Consensus: Scalability Through Optimism and Weak Liveness

Authors: Pedro Antonino, Antoine Durand, and A. W. Roscoe

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)

Abstract
Scalability is a central concern of Byzantine Fault Tolerant (BFT) distributed protocols. The ubiquitous approach to work around the well-known Dolev-Reischuk Ω(n²) communication complexity lower bound is to use a random selection process to draw a hopefully small committee from a population of agents to run the communication-heavy protocol. We propose a notion of hierarchical consensus that combines two sub-protocols: an optimistic primary sub-protocol that can tolerate less than 1/2 failures and a fallback secondary protocol that can tolerate less than 1/3 failures; we achieve the higher failure threshold by requiring a weaker notion of liveness for the primary. This distinction between the level of fault tolerance between primary and secondary is reflected in the size of committees implementing these protocols. For a population of agents with close to 2/3 of honest agents, we need to select a committee with hundreds of agents to reach the level of tolerance expected for the primary, whereas we need thousands to reach the level expected for the secondary with a very small probability of error ε. Our hierarchical construct is such that if the primary comes to a decision, it can simply propagate it to the secondary protocol, so it does not need to properly engage in an agreement protocol independently. Our architecture is flexible and allows us to use our technique for most protocols that are based on random sampling. By studying hierarchical protocols, we discovered new theoretical results of independent interest. Specifically, the ability to handover from a primary protocol requires a new Justifiability property that allows agents to pre-decide on a value, such that if the protocol decides, it must be on that pre-decided value.
Cite as

Pedro Antonino, Antoine Durand, and A. W. Roscoe. Hierarchical Consensus: Scalability Through Optimism and Weak Liveness. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 6:1-6:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{antonino_et_al:LIPIcs.DISC.2025.6,
  author =	{Antonino, Pedro and Durand, Antoine and Roscoe, A. W.},
  title =	{{Hierarchical Consensus: Scalability Through Optimism and Weak Liveness}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{6:1--6:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.6},
  URN =		{urn:nbn:de:0030-drops-248232},
  doi =		{10.4230/LIPIcs.DISC.2025.6},
  annote =	{Keywords: Hierarchical, Handover, Justifiability, Consensus, Distributed Systems, Blockchain}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.13
Composable Byzantine Agreements with Reorder Attacks

Authors: Jing Chen, Jin Dong, Jichen Li, Xuanzhi Xia, and Wentao Zhou

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
Byzantine agreement (BA) is a foundational building block in distributed systems that has been extensively studied for decades. With the growing demand for protocol composition in practice, the security analysis of BA protocols under multi-instance executions has attracted increasing attention. However, most existing adversary models focus solely on party corruption and neglect important threats posed by adversarial manipulations of communication channels in the network. Through channel attacks, messages can be reordered across multiple executions and lead to violations of the protocol’s security guarantees, without the participating parties being corrupted. In this work, we present the first adversary model that combines party corruption and channel attacks. Based on this model, we establish new security thresholds for Byzantine agreement under parallel and concurrent compositions, supported by complementary impossibility and possibility results that match each other to form a tight bound. For the impossibility result, we show that even authenticated Byzantine agreement protocols cannot be secure under parallel composition when n ≤ 3t or n ≤ 2c + 2t + 1, where t and c denote the number of corrupted parties and communication channels, respectively. For the possibility result, we prove the existence of secure protocols for unauthenticated Byzantine agreement under parallel and concurrent composition, when n > 3t and n > 2c+2t+1. More specifically, we provide a general black-box compiler that transforms any single-instance secure BA protocol into one that is secure under parallel executions, and we provide a non-black-box construction for concurrent compositions.
Cite as

Jing Chen, Jin Dong, Jichen Li, Xuanzhi Xia, and Wentao Zhou. Composable Byzantine Agreements with Reorder Attacks. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 13:1-13:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chen_et_al:LIPIcs.AFT.2025.13,
  author =	{Chen, Jing and Dong, Jin and Li, Jichen and Xia, Xuanzhi and Zhou, Wentao},
  title =	{{Composable Byzantine Agreements with Reorder Attacks}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{13:1--13:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.13},
  URN =		{urn:nbn:de:0030-drops-247321},
  doi =		{10.4230/LIPIcs.AFT.2025.13},
  annote =	{Keywords: Byzantine agreement, protocol composition, channel reorder attack, security threshold}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.10
A Postcard from Mars: Exploring Interplanetary Communications in Virtual Reality

Authors: Adalberto L. Simeone

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
In this paper we present an Immersive Speculative Enactment focused on the theme of interplanetary communications. These are a novel approach extending conventional Speculative Enactments to Virtual Reality. We created a narrative-based scenario in which participants played the role of human colonists on either Mars or the Moon, to explore a possible future in which interplanetary communication becomes a necessity. To enact this scenario, we created a VR interactive experience to elicit feedback on the idea of communicating across planets. Through an exploratory qualitative analysis of this immersive enactment, we found that while the future envisioned was seen as too distant to prompt realistic behaviour from all participants, the enactment helped us and the participants to reflect on the experience. We discuss these findings, drawing potential implications for the improvement of the feeling of "really being there" even in implausible situations and further contribute reflections on the role of ISEs in space-related scenarios.
Cite as

Adalberto L. Simeone. A Postcard from Mars: Exploring Interplanetary Communications in Virtual Reality. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 10:1-10:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{simeone:OASIcs.SpaceCHI.2025.10,
  author =	{Simeone, Adalberto L.},
  title =	{{A Postcard from Mars: Exploring Interplanetary Communications in Virtual Reality}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{10:1--10:16},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.10},
  URN =		{urn:nbn:de:0030-drops-240002},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.10},
  annote =	{Keywords: Immersive Speculative Enactments, Interplanetary Communications, Virtual Reality}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.10
Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems

Authors: Hamidreza Akef, Minki Hhan, and David Soloveichik

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Computing equilibrium concentrations of molecular complexes is generally analytically intractable and requires numerical approaches. In this work we focus on the polymer-monomer level, where indivisible molecules (monomers) combine to form complexes (polymers). Rather than employing free-energy parameters for each polymer, we focus on the athermic setting where all interactions preserve enthalpy. This setting aligns with the strongly bonded (domain-based) regime in DNA nanotechnology when strands can bind in different ways, but always with maximum overall bonding - and is consistent with the saturated configurations in the Thermodynamic Binding Networks (TBNs) model. Within this context, we develop an iterative algorithm for assigning polymer concentrations to satisfy detailed-balance, where on-target (desired) polymers are in high concentrations and off-target (undesired) polymers are in low. Even if not directly executed, our algorithm provides effective insights into upper bounds on concentration of off-target polymers, connecting combinatorial arguments about discrete configurations such as those in the TBN model to real-valued concentrations. We conclude with an application of our method to decreasing leak in DNA logic and signal propagation. Our results offer a new framework for design and verification of equilibrium concentrations when configurations are distinguished by entropic forces.
Cite as

Hamidreza Akef, Minki Hhan, and David Soloveichik. Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 10:1-10:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{akef_et_al:LIPIcs.DNA.31.10,
  author =	{Akef, Hamidreza and Hhan, Minki and Soloveichik, David},
  title =	{{Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{10:1--10:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.10},
  URN =		{urn:nbn:de:0030-drops-238595},
  doi =		{10.4230/LIPIcs.DNA.31.10},
  annote =	{Keywords: Equilibrium concentrations, Thermodynamic Binding Networks, Monomer-polymer model, Detailed balance}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.3
Enriching Location Representation with Detailed Semantic Information

Authors: Junyuan Liu, Xinglei Wang, and Tao Cheng

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Spatial representations that capture both structural and semantic characteristics of urban environments are essential for urban modeling. Traditional spatial embeddings often prioritize spatial proximity while underutilizing fine-grained contextual information from places. To address this limitation, we introduce CaLLiPer+, an extension of the CaLLiPer model that systematically integrates Point-of-Interest (POI) names alongside categorical labels within a multimodal contrastive learning framework. We evaluate its effectiveness on two downstream tasks - land use classification and socioeconomic status distribution mapping - demonstrating consistent performance gains of 4% to 11% over baseline methods. Additionally, we show that incorporating POI names enhances location retrieval, enabling models to capture complex urban concepts with greater precision. Ablation studies further reveal the complementary role of POI names and the advantages of leveraging pretrained text encoders for spatial representations. Overall, our findings highlight the potential of integrating fine-grained semantic attributes and multimodal learning techniques to advance the development of urban foundation models.
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Junyuan Liu, Xinglei Wang, and Tao Cheng. Enriching Location Representation with Detailed Semantic Information. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 3:1-3:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{liu_et_al:LIPIcs.GIScience.2025.3,
  author =	{Liu, Junyuan and Wang, Xinglei and Cheng, Tao},
  title =	{{Enriching Location Representation with Detailed Semantic Information}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{3:1--3:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.3},
  URN =		{urn:nbn:de:0030-drops-238322},
  doi =		{10.4230/LIPIcs.GIScience.2025.3},
  annote =	{Keywords: Location Embedding, Contrastive Learning, Pretrained Model}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.14
Human Readable Compression of GFA Paths Using Grammar-Based Code

Authors: Peter Heringer and Daniel Doerr

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Pangenome graphs offer a compact and comprehensive representation of genomic diversity, improving tasks such as variant calling, genotyping, and other downstream analyses. Although the underlying graph structures scale sublinearly with the number of haplotypes, the widely used GFA file format suffers from rapidly growing file sizes due to the explicit and repetitive encoding of haplotype paths. In this work, we introduce an extension to the GFA format that enables efficient grammar-based compression of haplotype paths while retaining human readability. In addition, grammar-based encoding provides an efficient in-memory data structure that does not require decompression, but conversely improves the runtime of many computational tasks that involve haplotype comparisons. We present sqz, a method that makes use of the proposed format extension to encode haplotype paths using byte pair encoding, a grammar-based compression scheme. We evaluate sqz on recent human pangenome graphs from Heumos et al. and the Human Pangenome Reference Consortium (HPRC), comparing it to existing compressors bgzip, gbz, and sequitur. sqz scales sublinearly with the number of haplotypes in a pangenome graph and consistently achieves higher compression ratios than sequitur and up to 5 times better compression than bgzip in HPRC graphs and up to 10 times in the graph from Heumos et al.. When combined with bgzip, sqz matches or excels the compression ratio of gbz across all our datasets. These results demonstrate the potential of our proposed extension of the GFA format in reducing haplotype path redundancy and improving storage efficiency for pangenome graphs.
Cite as

Peter Heringer and Daniel Doerr. Human Readable Compression of GFA Paths Using Grammar-Based Code. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{heringer_et_al:LIPIcs.WABI.2025.14,
  author =	{Heringer, Peter and Doerr, Daniel},
  title =	{{Human Readable Compression of GFA Paths Using Grammar-Based Code}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{14:1--14:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.14},
  URN =		{urn:nbn:de:0030-drops-239395},
  doi =		{10.4230/LIPIcs.WABI.2025.14},
  annote =	{Keywords: pangenomics, pangenome graphs, compression, grammar-based code, byte pair encoding}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.12
SAT-Metropolis: Combining Markov Chain Monte Carlo with SAT/SMT Sampling

Authors: Maja Aaslyng Dall, Raúl Pardo, Thomas Lumley, and Andrzej Wąsowski

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
Probabilistic inference via Markov Chain Monte Carlo (MCMC) is at the core of statistical analysis and has a myriad of applications. However, probabilistic inference in the presence of hard constraints, so constraints that must hold with probability one, remains a difficult task. The reason is that hard constraints make the state space of the target distribution sparse, and may even divide it into disjoint areas separated by probability-zero states. As a consequence, the random walk performed by MCMC algorithms fails to effectively sample from the complete set of states in the target distribution. In this paper, we propose the use of SAT/SMT sampling to adapt a classic and widely used MCMC algorithm, namely Metropolis sampling. We use SAT/SMT samplers as proposal distributions. In this way, the algorithm ignores probability-zero states. Our method, sat-metropolis, effectively works in problems with multivariate polynomial hard constraints where regular Metropolis fails. We evaluate the convergence and scalability of sat-metropolis using three different state-of-the-art SAT/SMT samplers: SPUR, CMSGen, and MegaSampler. The evaluation shows how different features of the SAT/SMT sampling tools affect the effectiveness of probabilistic inference. We conclude that SAT/SMT sampling is a viable and promising technology for probabilistic inference under hard constraints.
Cite as

Maja Aaslyng Dall, Raúl Pardo, Thomas Lumley, and Andrzej Wąsowski. SAT-Metropolis: Combining Markov Chain Monte Carlo with SAT/SMT Sampling. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 12:1-12:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dall_et_al:LIPIcs.SAT.2025.12,
  author =	{Dall, Maja Aaslyng and Pardo, Ra\'{u}l and Lumley, Thomas and W\k{a}sowski, Andrzej},
  title =	{{SAT-Metropolis: Combining Markov Chain Monte Carlo with SAT/SMT Sampling}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{12:1--12:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.12},
  URN =		{urn:nbn:de:0030-drops-237462},
  doi =		{10.4230/LIPIcs.SAT.2025.12},
  annote =	{Keywords: SAT/SMT sampling, Probabilistic inference, Markov Chain Monte Carlo}
}
Document
DOI: 10.4230/LIPIcs.CCC.2025.2
Hardness Amplification for Real-Valued Functions

Authors: Yunqi Li and Prashant Nalini Vasudevan

Published in: LIPIcs, Volume 339, 40th Computational Complexity Conference (CCC 2025)

Abstract
Given an integer-valued function f:{0,1}ⁿ → {0,1,… , m-1} that is mildly hard to compute on instances drawn from some distribution D over {0,1}ⁿ, we show that the function g(x_1, … , x_t) = f(x_1) + ⋯ + f(x_t) is strongly hard to compute on instances (x_1,… ,x_t) drawn from the product distribution D^t. We also show the same for the task of approximately computing real-valued functions f:{0,1}ⁿ → [0,m). Our theorems immediately imply hardness self-amplification for several natural problems including Max-Clique and Max-SAT, Approximate #SAT, Entropy Estimation, etc..
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Yunqi Li and Prashant Nalini Vasudevan. Hardness Amplification for Real-Valued Functions. In 40th Computational Complexity Conference (CCC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 339, pp. 2:1-2:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{li_et_al:LIPIcs.CCC.2025.2,
  author =	{Li, Yunqi and Vasudevan, Prashant Nalini},
  title =	{{Hardness Amplification for Real-Valued Functions}},
  booktitle =	{40th Computational Complexity Conference (CCC 2025)},
  pages =	{2:1--2:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-379-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{339},
  editor =	{Srinivasan, Srikanth},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2025.2},
  URN =		{urn:nbn:de:0030-drops-236967},
  doi =		{10.4230/LIPIcs.CCC.2025.2},
  annote =	{Keywords: Average-case complexity, hardness amplification}
}
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