4 Search Results for "Oliveira da Costa, Ana"

Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.20
Flavors of Quantifiers in Hyperlogics

Authors: Marek Chalupa, Thomas A. Henzinger, and Ana Oliveira da Costa

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
Hypertrace logic is a sorted first-order logic with separate sorts for time and execution traces. Its formulas specify hyperproperties, which are properties relating multiple traces. In this work, we extend hypertrace logic by introducing trace quantifiers that range over the set of all possible traces. In this extended logic, formulas can quantify over two kinds of trace variables: constrained trace variables, which range over a fixed set of traces defined by the model, and unconstrained trace variables, which can be assigned to any trace. In comparison, hyperlogics such as HyperLTL have only constrained trace quantifiers. We use hypertrace logic to study how different quantifier patterns affect the decidability of the satisfiability problem. We prove that hypertrace logic without constrained trace quantifiers is equivalent to monadic second-order logic of one successor (S1S), and therefore satisfiable, and that the trace-prefixed fragment (all trace quantifiers precede all time quantifiers) is equivalent to HyperQPTL. Moreover, we show that all hypertrace formulas where the only alternation between constrained trace quantifiers is from an existential to a universal quantifier are equisatisfiable to formulas without constraints on their trace variables and, therefore, decidable as well. Our framework allows us to study also time-prefixed hyperlogics, for which we provide new decidability and undecidability results.
Cite as

Marek Chalupa, Thomas A. Henzinger, and Ana Oliveira da Costa. Flavors of Quantifiers in Hyperlogics. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 20:1-20:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chalupa_et_al:LIPIcs.FSTTCS.2025.20,
  author =	{Chalupa, Marek and Henzinger, Thomas A. and Oliveira da Costa, Ana},
  title =	{{Flavors of Quantifiers in Hyperlogics}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{20:1--20:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.20},
  URN =		{urn:nbn:de:0030-drops-251016},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.20},
  annote =	{Keywords: Hyperproperties, Satisfiability, First-order Logic, S1S}
}
Document
DOI: 10.4230/LIPIcs.CSL.2025.10
The Complexity of Second-Order HyperLTL

Authors: Hadar Frenkel and Martin Zimmermann

Published in: LIPIcs, Volume 326, 33rd EACSL Annual Conference on Computer Science Logic (CSL 2025)

Abstract
We determine the complexity of second-order HyperLTL satisfiability, finite-state satisfiability, and model-checking: All three are equivalent to truth in third-order arithmetic. We also consider two fragments of second-order HyperLTL that have been introduced with the aim to facilitate effective model-checking by restricting the sets one can quantify over. The first one restricts second-order quantification to smallest/largest sets that satisfy a guard while the second one restricts second-order quantification further to least fixed points of (first-order) HyperLTL definable functions. All three problems for the first fragment are still equivalent to truth in third-order arithmetic while satisfiability for the second fragment is Σ₁¹-complete, i.e., only as hard as for (first-order) HyperLTL and therefore much less complex. Finally, finite-state satisfiability and model-checking are in Σ₂² and are Σ₁¹-hard, and thus also less complex than for full second-order HyperLTL.
Cite as

Hadar Frenkel and Martin Zimmermann. The Complexity of Second-Order HyperLTL. In 33rd EACSL Annual Conference on Computer Science Logic (CSL 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 326, pp. 10:1-10:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{frenkel_et_al:LIPIcs.CSL.2025.10,
  author =	{Frenkel, Hadar and Zimmermann, Martin},
  title =	{{The Complexity of Second-Order HyperLTL}},
  booktitle =	{33rd EACSL Annual Conference on Computer Science Logic (CSL 2025)},
  pages =	{10:1--10:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-362-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{326},
  editor =	{Endrullis, J\"{o}rg and Schmitz, Sylvain},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2025.10},
  URN =		{urn:nbn:de:0030-drops-227679},
  doi =		{10.4230/LIPIcs.CSL.2025.10},
  annote =	{Keywords: HyperLTL, Satisfiability, Model-checking}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2023.21
Hypernode Automata

Authors: Ezio Bartocci, Thomas A. Henzinger, Dejan Nickovic, and Ana Oliveira da Costa

Published in: LIPIcs, Volume 279, 34th International Conference on Concurrency Theory (CONCUR 2023)

Abstract
We introduce hypernode automata as a new specification formalism for hyperproperties of concurrent systems. They are finite automata with nodes labeled with hypernode logic formulas and transitions labeled with actions. A hypernode logic formula specifies relations between sequences of variable values in different system executions. Unlike HyperLTL, hypernode logic takes an asynchronous view on execution traces by constraining the values and the order of value changes of each variable without correlating the timing of the changes. Different execution traces are synchronized solely through the transitions of hypernode automata. Hypernode automata naturally combine asynchronicity at the node level with synchronicity at the transition level. We show that the model-checking problem for hypernode automata is decidable over action-labeled Kripke structures, whose actions induce transitions of the specification automata. For this reason, hypernode automaton is a suitable formalism for specifying and verifying asynchronous hyperproperties, such as declassifying observational determinism in multi-threaded programs.
Cite as

Ezio Bartocci, Thomas A. Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. Hypernode Automata. In 34th International Conference on Concurrency Theory (CONCUR 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 279, pp. 21:1-21:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{bartocci_et_al:LIPIcs.CONCUR.2023.21,
  author =	{Bartocci, Ezio and Henzinger, Thomas A. and Nickovic, Dejan and Oliveira da Costa, Ana},
  title =	{{Hypernode Automata}},
  booktitle =	{34th International Conference on Concurrency Theory (CONCUR 2023)},
  pages =	{21:1--21:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-299-0},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{279},
  editor =	{P\'{e}rez, Guillermo A. and Raskin, Jean-Fran\c{c}ois},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2023.21},
  URN =		{urn:nbn:de:0030-drops-190153},
  doi =		{10.4230/LIPIcs.CONCUR.2023.21},
  annote =	{Keywords: Hyperproperties, Asynchronous, Automata, Logic}
}
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