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DOI: 10.4230/LIPIcs.CCC.2024.7

Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy

Authors: Sepehr Assadi, Prantar Ghosh, Bruno Loff, Parth Mittal, and Sagnik Mukhopadhyay

Published in: LIPIcs, Volume 300, 39th Computational Complexity Conference (CCC 2024)

Abstract

The following question arises naturally in the study of graph streaming algorithms: Is there any graph problem which is "not too hard", in that it can be solved efficiently with total communication (nearly) linear in the number n of vertices, and for which, nonetheless, any streaming algorithm with Õ(n) space (i.e., a semi-streaming algorithm) needs a polynomial n^Ω(1) number of passes? Assadi, Chen, and Khanna [STOC 2019] were the first to prove that this is indeed the case. However, the lower bounds that they obtained are for rather non-standard graph problems. Our first main contribution is to present the first polynomial-pass lower bounds for natural "not too hard" graph problems studied previously in the streaming model: k-cores and degeneracy. We devise a novel communication protocol for both problems with near-linear communication, thus showing that k-cores and degeneracy are natural examples of "not too hard" problems. Indeed, previous work have developed single-pass semi-streaming algorithms for approximating these problems. In contrast, we prove that any semi-streaming algorithm for exactly solving these problems requires (almost) Ω(n^{1/3}) passes. The lower bound follows by a reduction from a generalization of the hidden pointer chasing (HPC) problem of Assadi, Chen, and Khanna, which is also the basis of their earlier semi-streaming lower bounds. Our second main contribution is improved round-communication lower bounds for the underlying communication problems at the basis of these reductions: - We improve the previous lower bound of Assadi, Chen, and Khanna for HPC to achieve optimal bounds for this problem. - We further observe that all current reductions from HPC can also work with a generalized version of this problem that we call MultiHPC, and prove an even stronger and optimal lower bound for this generalization. These two results collectively allow us to improve the resulting pass lower bounds for semi-streaming algorithms by a polynomial factor, namely, from n^{1/5} to n^{1/3} passes.

Cite as

Sepehr Assadi, Prantar Ghosh, Bruno Loff, Parth Mittal, and Sagnik Mukhopadhyay. Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy. In 39th Computational Complexity Conference (CCC 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 300, pp. 7:1-7:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{assadi_et_al:LIPIcs.CCC.2024.7,
  author =	{Assadi, Sepehr and Ghosh, Prantar and Loff, Bruno and Mittal, Parth and Mukhopadhyay, Sagnik},
  title =	{{Polynomial Pass Semi-Streaming Lower Bounds for K-Cores and Degeneracy}},
  booktitle =	{39th Computational Complexity Conference (CCC 2024)},
  pages =	{7:1--7:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-331-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{300},
  editor =	{Santhanam, Rahul},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2024.7},
  URN =		{urn:nbn:de:0030-drops-204035},
  doi =		{10.4230/LIPIcs.CCC.2024.7},
  annote =	{Keywords: Graph streaming, Lower bounds, Communication complexity, k-Cores and degeneracy}
}

Document

Track A: Algorithms, Complexity and Games

DOI: 10.4230/LIPIcs.ICALP.2024.30

Õptimal Dynamic Time Warping on Run-Length Encoded Strings

Authors: Itai Boneh, Shay Golan, Shay Mozes, and Oren Weimann

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract

Dynamic Time Warping (DTW) distance is the optimal cost of matching two strings when extending runs of letters is for free. Therefore, it is natural to measure the time complexity of DTW in terms of the number of runs n (rather than the string lengths N). In this paper, we give an Õ(n²) time algorithm for computing the DTW distance. This matches (up to log factors) the known (conditional) lower bound, and should be compared with the previous fastest O(n³) time exact algorithm and the Õ(n²) time approximation algorithm. Our method also immediately implies an Õ(nk) time algorithm when the distance is bounded by k. This should be compared with the previous fastest O(n²k) and O(Nk) time exact algorithms and the Õ(nk) time approximation algorithm.

Cite as

Itai Boneh, Shay Golan, Shay Mozes, and Oren Weimann. Õptimal Dynamic Time Warping on Run-Length Encoded Strings. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 30:1-30:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{boneh_et_al:LIPIcs.ICALP.2024.30,
  author =	{Boneh, Itai and Golan, Shay and Mozes, Shay and Weimann, Oren},
  title =	{{\~{O}ptimal Dynamic Time Warping on Run-Length Encoded Strings}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{30:1--30:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.30},
  URN =		{urn:nbn:de:0030-drops-201730},
  doi =		{10.4230/LIPIcs.ICALP.2024.30},
  annote =	{Keywords: Dynamic time warping, Fr\'{e}chet distance, edit distance, run-length encoding}
}

Document

Track A: Algorithms, Complexity and Games

DOI: 10.4230/LIPIcs.ICALP.2024.57

Non-Linear Paging

Authors: Ilan Doron-Arad and Joseph (Seffi) Naor

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract

We formulate and study non-linear paging - a broad model of online paging where the size of subsets of pages is determined by a monotone non-linear set function of the pages. This model captures the well-studied classic weighted paging and generalized paging problems, and also submodular and supermodular paging, studied here for the first time, that have a range of applications from virtual memory to machine learning. Unlike classic paging, the cache threshold parameter k does not yield good competitive ratios for non-linear paging. Instead, we introduce a novel parameter 𝓁 that generalizes the notion of cache size to the non-linear setting. We obtain a tight deterministic 𝓁-competitive algorithm for general non-linear paging and a o(log²𝓁)-competitive lower bound for randomized algorithms. Our algorithm is based on a new generic LP for the problem that captures both submodular and supermodular paging, in contrast to LPs used for submodular cover settings. We finally focus on the supermodular paging problem, which is a variant of online set cover and online submodular cover, where sets are repeatedly requested to be removed from the cover. We obtain polylogarithmic lower and upper bounds and an offline approximation algorithm.

Cite as

Ilan Doron-Arad and Joseph (Seffi) Naor. Non-Linear Paging. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 57:1-57:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{doronarad_et_al:LIPIcs.ICALP.2024.57,
  author =	{Doron-Arad, Ilan and Naor, Joseph (Seffi)},
  title =	{{Non-Linear Paging}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{57:1--57:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.57},
  URN =		{urn:nbn:de:0030-drops-202000},
  doi =		{10.4230/LIPIcs.ICALP.2024.57},
  annote =	{Keywords: paging, competitive analysis, non-linear paging, submodular and supermodular functions}
}

Document

Survey

DOI: 10.4230/TGDK.2.1.3

Semantic Web: Past, Present, and Future

Authors: Ansgar Scherp, Gerd Groener, Petr Škoda, Katja Hose, and Maria-Esther Vidal

Published in: TGDK, Volume 2, Issue 1 (2024): Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge, Volume 2, Issue 1

Abstract

Ever since the vision was formulated, the Semantic Web has inspired many generations of innovations. Semantic technologies have been used to share vast amounts of information on the Web, enhance them with semantics to give them meaning, and enable inference and reasoning on them. Throughout the years, semantic technologies, and in particular knowledge graphs, have been used in search engines, data integration, enterprise settings, and machine learning. In this paper, we recap the classical concepts and foundations of the Semantic Web as well as modern and recent concepts and applications, building upon these foundations. The classical topics we cover include knowledge representation, creating and validating knowledge on the Web, reasoning and linking, and distributed querying. We enhance this classical view of the so-called "Semantic Web Layer Cake" with an update of recent concepts that include provenance, security and trust, as well as a discussion of practical impacts from industry-led contributions. We conclude with an outlook on the future directions of the Semantic Web. This is a living document. If you like to contribute, please contact the first author and visit: https://github.com/ascherp/semantic-web-primer

Cite as

Ansgar Scherp, Gerd Groener, Petr Škoda, Katja Hose, and Maria-Esther Vidal. Semantic Web: Past, Present, and Future. In Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 1, pp. 3:1-3:37, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{scherp_et_al:TGDK.2.1.3,
  author =	{Scherp, Ansgar and Groener, Gerd and \v{S}koda, Petr and Hose, Katja and Vidal, Maria-Esther},
  title =	{{Semantic Web: Past, Present, and Future}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:37},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.1.3},
  URN =		{urn:nbn:de:0030-drops-198607},
  doi =		{10.4230/TGDK.2.1.3},
  annote =	{Keywords: Linked Open Data, Semantic Web Graphs, Knowledge Graphs}
}

Document

DOI: 10.4230/LIPIcs.ECOOP.2023.16

Constraint Based Compiler Optimization for Energy Harvesting Applications

Authors: Yannan Li and Chao Wang

Published in: LIPIcs, Volume 263, 37th European Conference on Object-Oriented Programming (ECOOP 2023)

Abstract

We propose a method for optimizing the energy efficiency of software code running on small computing devices in the Internet of Things (IoT) that are powered exclusively by electricity harvested from ambient energy in the environment. Due to the weak and unstable nature of the energy source, it is challenging for developers to manually optimize the software code to deal with mismatch between the intermittent power supply and the computation demand. Our method overcomes the challenge by using a combination of three techniques. First, we use static program analysis to automatically identify opportunities for precomputation, i.e., computation that may be performed ahead of time as opposed to just in time. Second, we optimize the precomputation policy, i.e., a way to split and reorder steps of a computation task in the original software to match the intermittent power supply while satisfying a variety of system requirements; this is accomplished by formulating energy optimization as a constraint satisfiability problem and then solving the problem using an off-the-shelf SMT solver. Third, we use a state-of-the-art compiler platform (LLVM) to automate the program transformation to ensure that the optimized software code is correct by construction. We have evaluated our method on a large number of benchmark programs, which are C programs implementing secure communication protocols that are popular for energy-harvesting IoT devices. Our experimental results show that the method is efficient in optimizing all benchmark programs. Furthermore, the optimized programs significantly outperform the original programs in terms of energy efficiency and latency, and the overall improvement ranges from 2.3X to 36.7X.

Cite as

Yannan Li and Chao Wang. Constraint Based Compiler Optimization for Energy Harvesting Applications. In 37th European Conference on Object-Oriented Programming (ECOOP 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 263, pp. 16:1-16:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{li_et_al:LIPIcs.ECOOP.2023.16,
  author =	{Li, Yannan and Wang, Chao},
  title =	{{Constraint Based Compiler Optimization for Energy Harvesting Applications}},
  booktitle =	{37th European Conference on Object-Oriented Programming (ECOOP 2023)},
  pages =	{16:1--16:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-281-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{263},
  editor =	{Ali, Karim and Salvaneschi, Guido},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2023.16},
  URN =		{urn:nbn:de:0030-drops-182096},
  doi =		{10.4230/LIPIcs.ECOOP.2023.16},
  annote =	{Keywords: Compiler, energy optimization, constraint solving, cryptography, IoT}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2022.64

GPU Computation of the Euler Characteristic Curve for Imaging Data

Authors: Fan Wang, Hubert Wagner, and Chao Chen

Published in: LIPIcs, Volume 224, 38th International Symposium on Computational Geometry (SoCG 2022)

Abstract

Persistent homology is perhaps the most popular and useful tool offered by topological data analysis - with point-cloud data being the most common setup. Its older cousin, the Euler characteristic curve (ECC) is less expressive - but far easier to compute. It is particularly suitable for analyzing imaging data, and is commonly used in fields ranging from astrophysics to biomedical image analysis. These fields are embracing GPU computations to handle increasingly large datasets. We therefore propose an optimized GPU implementation of ECC computation for 2D and 3D grayscale images. The goal of this paper is twofold. First, we offer a practical tool, illustrating its performance with thorough experimentation - but also explain its inherent shortcomings. Second, this simple algorithm serves as a perfect backdrop for highlighting basic GPU programming techniques that make our implementation so efficient - and some common pitfalls we avoided. This is intended as a step towards a wider usage of GPU programming in computational geometry and topology software. We find this is particularly important as geometric and topological tools are used in conjunction with modern, GPU-accelerated machine learning frameworks.

Cite as

Fan Wang, Hubert Wagner, and Chao Chen. GPU Computation of the Euler Characteristic Curve for Imaging Data. In 38th International Symposium on Computational Geometry (SoCG 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 224, pp. 64:1-64:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{wang_et_al:LIPIcs.SoCG.2022.64,
  author =	{Wang, Fan and Wagner, Hubert and Chen, Chao},
  title =	{{GPU Computation of the Euler Characteristic Curve for Imaging Data}},
  booktitle =	{38th International Symposium on Computational Geometry (SoCG 2022)},
  pages =	{64:1--64:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-227-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{224},
  editor =	{Goaoc, Xavier and Kerber, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2022.64},
  URN =		{urn:nbn:de:0030-drops-160724},
  doi =		{10.4230/LIPIcs.SoCG.2022.64},
  annote =	{Keywords: topological data analysis, Euler characteristic, Euler characteristic curve, Betti curve, persistent homology, algorithms, parallel programming, algorithm engineering, GPU programming, imaging data}
}

Document

DOI: 10.4230/LIPIcs.CONCUR.2017.16

Checking Linearizability of Concurrent Priority Queues

Authors: Ahmed Bouajjani, Constantin Enea, and Chao Wang

Published in: LIPIcs, Volume 85, 28th International Conference on Concurrency Theory (CONCUR 2017)

Abstract

Efficient implementations of concurrent objects such as atomic collections are essential to modern computing. Unfortunately their correctness criteria — linearizability with respect to given ADT specifications — are hard to verify. Verifying linearizability is undecidable in general, even on classes of implementations where the usual control-state reachability is decidable. In this work we consider concurrent priority queues which are fundamental to many multi-threaded applications like task scheduling or discrete event simulation, and show that verifying linearizability of such implementations is reducible to control-state reachability. This reduction entails the first decidability results for verifying concurrent priority queues with an unbounded number of threads, and it enables the application of existing safety-verification tools for establishing their correctness.

Cite as

Ahmed Bouajjani, Constantin Enea, and Chao Wang. Checking Linearizability of Concurrent Priority Queues. In 28th International Conference on Concurrency Theory (CONCUR 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 85, pp. 16:1-16:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{bouajjani_et_al:LIPIcs.CONCUR.2017.16,
  author =	{Bouajjani, Ahmed and Enea, Constantin and Wang, Chao},
  title =	{{Checking Linearizability of Concurrent Priority Queues}},
  booktitle =	{28th International Conference on Concurrency Theory (CONCUR 2017)},
  pages =	{16:1--16:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-048-4},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{85},
  editor =	{Meyer, Roland and Nestmann, Uwe},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2017.16},
  URN =		{urn:nbn:de:0030-drops-78079},
  doi =		{10.4230/LIPIcs.CONCUR.2017.16},
  annote =	{Keywords: Concurrency, Linearizability, Model Checking}
}

Document

Multimedia Contribution

DOI: 10.4230/LIPIcs.SoCG.2017.65

Cardiac Trabeculae Segmentation: an Application of Computational Topology (Multimedia Contribution)

Authors: Chao Chen, Dimitris Metaxas, Yusu Wang, and Pengxiang Wu

Published in: LIPIcs, Volume 77, 33rd International Symposium on Computational Geometry (SoCG 2017)

Abstract

In this video, we present a research project on cardiac trabeculae segmentation. Trabeculae are fine muscle columns within human ventricles whose both ends are attached to the wall. Extracting these structures are very challenging even with state-of-the-art image segmentation techniques. We observed that these structures form natural topological handles. Based on such observation, we developed a topological approach, which employs advanced computational topology methods and achieve high quality segmentation results.

Cite as

Chao Chen, Dimitris Metaxas, Yusu Wang, and Pengxiang Wu. Cardiac Trabeculae Segmentation: an Application of Computational Topology (Multimedia Contribution). In 33rd International Symposium on Computational Geometry (SoCG 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 77, pp. 65:1-65:4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{chen_et_al:LIPIcs.SoCG.2017.65,
  author =	{Chen, Chao and Metaxas, Dimitris and Wang, Yusu and Wu, Pengxiang},
  title =	{{Cardiac Trabeculae Segmentation: an Application of Computational Topology}},
  booktitle =	{33rd International Symposium on Computational Geometry (SoCG 2017)},
  pages =	{65:1--65:4},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-038-5},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{77},
  editor =	{Aronov, Boris and Katz, Matthew J.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2017.65},
  URN =		{urn:nbn:de:0030-drops-72429},
  doi =		{10.4230/LIPIcs.SoCG.2017.65},
  annote =	{Keywords: image segmentation, trabeculae, persistent homology, homology localization}
}

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