14 Search Results for "Meyerhenke, Henning"

Document
DOI: 10.4230/LIPIcs.ESA.2025.32
Linear-Time Multilevel Graph Partitioning via Edge Sparsification

Authors: Lars Gottesbüren, Nikolai Maas, Dominik Rosch, Peter Sanders, and Daniel Seemaier

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
The current landscape of balanced graph partitioning is divided into high-quality but expensive multilevel algorithms and cheaper approaches with linear running time, such as single-level algorithms and streaming algorithms. We demonstrate how to achieve the best of both worlds with a linear time multilevel algorithm. Multilevel algorithms construct a hierarchy of increasingly smaller graphs by repeatedly contracting clusters of nodes. Our approach preserves their distinct advantage, allowing refinement of the partition over multiple levels with increasing detail. At the same time, we use edge sparsification to guarantee geometric size reduction between the levels and thus linear running time. We provide a proof of the linear running time as well as additional insights into the behavior of multilevel algorithms, showing that graphs with low modularity are most likely to trigger worst-case running time. We evaluate multiple approaches for edge sparsification and integrate our algorithm into the state-of-the-art multilevel partitioner KaMinPar, maintaining its excellent parallel scalability. As demonstrated in detailed experiments, this results in a 1.49× average speedup (up to 4× for some instances) with only 1% loss in solution quality. Moreover, our algorithm clearly outperforms state-of-the-art single-level and streaming approaches.
Cite as

Lars Gottesbüren, Nikolai Maas, Dominik Rosch, Peter Sanders, and Daniel Seemaier. Linear-Time Multilevel Graph Partitioning via Edge Sparsification. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 32:1-32:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gottesburen_et_al:LIPIcs.ESA.2025.32,
  author =	{Gottesb\"{u}ren, Lars and Maas, Nikolai and Rosch, Dominik and Sanders, Peter and Seemaier, Daniel},
  title =	{{Linear-Time Multilevel Graph Partitioning via Edge Sparsification}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{32:1--32:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.32},
  URN =		{urn:nbn:de:0030-drops-245007},
  doi =		{10.4230/LIPIcs.ESA.2025.32},
  annote =	{Keywords: Graph Partitioning, Graph Algorithms, Linear Time Algorithms, Graph Sparsification}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.12
Testing Whether a Subgraph Is Convex or Isometric

Authors: Sergio Cabello

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
We consider the following two algorithmic problems: given a graph G and a subgraph H ⊆ G, decide whether H is an isometric or a geodesically convex subgraph of G. It is relatively easy to see that the problems can be solved by computing the distances between all pairs of vertices. We provide a conditional lower bound showing that, for sparse graphs with n vertices and Θ(n) edges, we cannot expect to solve the problem in O(n^{2-ε}) time for any constant ε > 0. We also show that the problem can be solved in subquadratic time for planar graphs and in near-linear time for graphs of bounded treewidth. Finally, we provide a near-linear time algorithm for the setting where G is a plane graph and H is defined by a few cycles in G.
Cite as

Sergio Cabello. Testing Whether a Subgraph Is Convex or Isometric. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 12:1-12:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cabello:LIPIcs.WADS.2025.12,
  author =	{Cabello, Sergio},
  title =	{{Testing Whether a Subgraph Is Convex or Isometric}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{12:1--12:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.12},
  URN =		{urn:nbn:de:0030-drops-242439},
  doi =		{10.4230/LIPIcs.WADS.2025.12},
  annote =	{Keywords: convex subgraph, isometric subgraph, plane graph}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.19
GreedyML: A Parallel Algorithm for Maximizing Constrained Submodular Functions

Authors: Shivaram Gopal, S M Ferdous, Alex Pothen, and Hemanta Maji

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
We describe a parallel approximation algorithm for maximizing monotone submodular functions subject to hereditary constraints on distributed memory multiprocessors. Our work is motivated by the need to solve submodular optimization problems on massive data sets, for practical contexts such as data summarization, machine learning, and graph sparsification. Our work builds on the randomized distributed RandGreeDI algorithm, proposed by Barbosa, Ene, Nguyen, and Ward (2015). This algorithm computes a distributed solution by randomly partitioning the data among all the processors and then employing a single accumulation step in which all processors send their partial solutions to one processor. However, for large problems, the accumulation step exceeds the memory available on a processor, and the processor which performs the accumulation becomes a computational bottleneck. Hence we propose a generalization of the RandGreeDI algorithm that employs multiple accumulation steps to reduce the memory required. We analyze the approximation ratio and the time complexity of the algorithm (in the BSP model). We evaluate the new GreedyML algorithm on three classes of problems, and report results from large-scale data sets with millions of elements. The results show that the GreedyML algorithm can solve problems where the sequential Greedy and distributed RandGreeDI algorithms fail due to memory constraints. For certain computationally intensive problems, the GreedyML algorithm is faster than the RandGreeDI algorithm. The observed approximation quality of the solutions computed by the GreedyML algorithm closely matches those obtained by the RandGreeDI algorithm on these problems.
Cite as

Shivaram Gopal, S M Ferdous, Alex Pothen, and Hemanta Maji. GreedyML: A Parallel Algorithm for Maximizing Constrained Submodular Functions. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 19:1-19:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gopal_et_al:LIPIcs.SEA.2025.19,
  author =	{Gopal, Shivaram and Ferdous, S M and Pothen, Alex and Maji, Hemanta},
  title =	{{GreedyML: A Parallel Algorithm for Maximizing Constrained Submodular Functions}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{19:1--19:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.19},
  URN =		{urn:nbn:de:0030-drops-232572},
  doi =		{10.4230/LIPIcs.SEA.2025.19},
  annote =	{Keywords: Combinatorial optimization, submodular functions, distributed algorithms, approximation algorithms, data summarization}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.22
Concurrent Iterated Local Search for the Maximum Weight Independent Set Problem

Authors: Ernestine Großmann, Kenneth Langedal, and Christian Schulz

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
The Maximum Weight Independent Set problem is a fundamental NP-hard problem in combinatorial optimization with several real-world applications. Given an undirected vertex-weighted graph, the problem is to find a subset of the vertices with the highest possible weight under the constraint that no two vertices in the set can share an edge. This work presents a new iterated local search heuristic called CHILS (Concurrent Hybrid Iterated Local Search). The implementation of CHILS is specifically designed to handle large graphs of varying densities. CHILS outperforms the current state-of-the-art on commonly used benchmark instances, especially on the largest instances. As an added benefit, CHILS can run in parallel to leverage the power of multicore processors. The general technique used in CHILS is a new concurrent metaheuristic called Concurrent Difference-Core Heuristic that can also be applied to other combinatorial problems.
Cite as

Ernestine Großmann, Kenneth Langedal, and Christian Schulz. Concurrent Iterated Local Search for the Maximum Weight Independent Set Problem. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 22:1-22:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gromann_et_al:LIPIcs.SEA.2025.22,
  author =	{Gro{\ss}mann, Ernestine and Langedal, Kenneth and Schulz, Christian},
  title =	{{Concurrent Iterated Local Search for the Maximum Weight Independent Set Problem}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{22:1--22:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.22},
  URN =		{urn:nbn:de:0030-drops-232600},
  doi =		{10.4230/LIPIcs.SEA.2025.22},
  annote =	{Keywords: Randomized Local Search, Heuristics, Maximum Weight Independent Set, Algorithm Engineering, Parallel Computing}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.11
CluStRE: Streaming Graph Clustering with Multi-Stage Refinement

Authors: Adil Chhabra, Shai Dorian Peretz, and Christian Schulz

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
We present CluStRE, a novel streaming graph clustering algorithm that balances computational efficiency with high-quality clustering using multi-stage refinement. Unlike traditional in-memory clustering approaches, CluStRE processes graphs in a streaming setting, significantly reducing memory overhead while leveraging re-streaming and evolutionary heuristics to improve solution quality. Our method dynamically constructs a quotient graph, enabling modularity-based optimization while efficiently handling large-scale graphs. We introduce multiple configurations of CluStRE to provide trade-offs between speed, memory consumption, and clustering quality. Experimental evaluations demonstrate that CluStRE improves solution quality by 89.8%, operates 2.6× faster, and uses less than two-thirds of the memory required by the state-of-the-art streaming clustering algorithm on average. Moreover, our strongest mode enhances solution quality by up to 150% on average. With this, CluStRE achieves comparable solution quality to in-memory algorithms, i.e. over 96% of the quality of clustering approaches, including Louvain, effectively bridging the gap between streaming and traditional clustering methods.
Cite as

Adil Chhabra, Shai Dorian Peretz, and Christian Schulz. CluStRE: Streaming Graph Clustering with Multi-Stage Refinement. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 11:1-11:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chhabra_et_al:LIPIcs.SEA.2025.11,
  author =	{Chhabra, Adil and Dorian Peretz, Shai and Schulz, Christian},
  title =	{{CluStRE: Streaming Graph Clustering with Multi-Stage Refinement}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{11:1--11:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.11},
  URN =		{urn:nbn:de:0030-drops-232493},
  doi =		{10.4230/LIPIcs.SEA.2025.11},
  annote =	{Keywords: graph clustering, community, streaming, online, memetic, evolutionary}
}
Document
DOI: 10.4230/DagRep.13.12.1
Scalable Graph Mining and Learning (Dagstuhl Seminar 23491)

Authors: Danai Koutra, Henning Meyerhenke, Ilya Safro, and Fabian Brandt-Tumescheit

Published in: Dagstuhl Reports, Volume 13, Issue 12 (2024)

Abstract
This report documents the program and the outcomes of Dagstuhl Seminar 23491 "Scalable Graph Mining and Learning". The event brought together leading researchers and practitioners to discuss cutting-edge developments in graph machine learning, massive-scale graph analytics frameworks, and optimization techniques for graph processing. Besides the executive summary, the report contains abstracts of the 18 scientific talks presented, descriptions of three open problems, and preliminary results of three working groups formed during the seminar. In summary, the seminar successfully fostered discussions that bridged theoretical research and practical applications in scalable graph learning, mining, and analytics. Several potential outcomes include writing position and research papers as well as joint grant submissions.
Cite as

Danai Koutra, Henning Meyerhenke, Ilya Safro, and Fabian Brandt-Tumescheit. Scalable Graph Mining and Learning (Dagstuhl Seminar 23491). In Dagstuhl Reports, Volume 13, Issue 12, pp. 1-23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{koutra_et_al:DagRep.13.12.1,
  author =	{Koutra, Danai and Meyerhenke, Henning and Safro, Ilya and Brandt-Tumescheit, Fabian},
  title =	{{Scalable Graph Mining and Learning (Dagstuhl Seminar 23491)}},
  pages =	{1--23},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2024},
  volume =	{13},
  number =	{12},
  editor =	{Koutra, Danai and Meyerhenke, Henning and Safro, Ilya and Brandt-Tumescheit, Fabian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.13.12.1},
  URN =		{urn:nbn:de:0030-drops-198530},
  doi =		{10.4230/DagRep.13.12.1},
  annote =	{Keywords: Graph mining, Graph machine learning, (hyper)graph and network algorithms, high-performance computing for graphs, algorithm engineering for graphs}
}
Document
DOI: 10.4230/LIPIcs.ESA.2020.6
Approximation of the Diagonal of a Laplacian’s Pseudoinverse for Complex Network Analysis

Authors: Eugenio Angriman, Maria Predari, Alexander van der Grinten, and Henning Meyerhenke

Published in: LIPIcs, Volume 173, 28th Annual European Symposium on Algorithms (ESA 2020)

Abstract
The ubiquity of massive graph data sets in numerous applications requires fast algorithms for extracting knowledge from these data. We are motivated here by three electrical measures for the analysis of large small-world graphs G = (V, E) - i. e., graphs with diameter in O(log |V|), which are abundant in complex network analysis. From a computational point of view, the three measures have in common that their crucial component is the diagonal of the graph Laplacian’s pseudoinverse, L^+. Computing diag(L^+) exactly by pseudoinversion, however, is as expensive as dense matrix multiplication - and the standard tools in practice even require cubic time. Moreover, the pseudoinverse requires quadratic space - hardly feasible for large graphs. Resorting to approximation by, e. g., using the Johnson-Lindenstrauss transform, requires the solution of O(log |V| / ε²) Laplacian linear systems to guarantee a relative error, which is still very expensive for large inputs. In this paper, we present a novel approximation algorithm that requires the solution of only one Laplacian linear system. The remaining parts are purely combinatorial - mainly sampling uniform spanning trees, which we relate to diag(L^+) via effective resistances. For small-world networks, our algorithm obtains a ± ε-approximation with high probability, in a time that is nearly-linear in |E| and quadratic in 1 / ε. Another positive aspect of our algorithm is its parallel nature due to independent sampling. We thus provide two parallel implementations of our algorithm: one using OpenMP, one MPI + OpenMP. In our experiments against the state of the art, our algorithm (i) yields more accurate approximation results for diag(L^+), (ii) is much faster and more memory-efficient, and (iii) obtains good parallel speedups, in particular in the distributed setting.
Cite as

Eugenio Angriman, Maria Predari, Alexander van der Grinten, and Henning Meyerhenke. Approximation of the Diagonal of a Laplacian’s Pseudoinverse for Complex Network Analysis. In 28th Annual European Symposium on Algorithms (ESA 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 173, pp. 6:1-6:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{angriman_et_al:LIPIcs.ESA.2020.6,
  author =	{Angriman, Eugenio and Predari, Maria and van der Grinten, Alexander and Meyerhenke, Henning},
  title =	{{Approximation of the Diagonal of a Laplacian’s Pseudoinverse for Complex Network Analysis}},
  booktitle =	{28th Annual European Symposium on Algorithms (ESA 2020)},
  pages =	{6:1--6:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-162-7},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{173},
  editor =	{Grandoni, Fabrizio and Herman, Grzegorz and Sanders, Peter},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2020.6},
  URN =		{urn:nbn:de:0030-drops-128723},
  doi =		{10.4230/LIPIcs.ESA.2020.6},
  annote =	{Keywords: Laplacian pseudoinverse, electrical centrality measures, uniform spanning tree, effective resistance, parallel sampling}
}
Document
DOI: 10.4230/LIPIcs.SEA.2020.4
High-Quality Hierarchical Process Mapping

Authors: Marcelo Fonseca Faraj, Alexander van der Grinten, Henning Meyerhenke, Jesper Larsson Träff, and Christian Schulz

Published in: LIPIcs, Volume 160, 18th International Symposium on Experimental Algorithms (SEA 2020)

Abstract
Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation when processing graphs on a parallel computer. When a topology of a distributed system is known, an important task is then to map the blocks of the partition onto the processors such that the overall communication cost is reduced. We present novel multilevel algorithms that integrate graph partitioning and process mapping. Important ingredients of our algorithm include fast label propagation, more localized local search, initial partitioning, as well as a compressed data structure to compute processor distances without storing a distance matrix. Moreover, our algorithms are able to exploit a given hierarchical structure of the distributed system under consideration. Experiments indicate that our algorithms speed up the overall mapping process and, due to the integrated multilevel approach, also find much better solutions in practice. For example, one configuration of our algorithm yields similar solution quality as the previous state-of-the-art in terms of mapping quality for large numbers of partitions while being a factor 9.3 faster. Compared to the currently fastest iterated multilevel mapping algorithm Scotch, we obtain 16% better solutions while investing slightly more running time.
Cite as

Marcelo Fonseca Faraj, Alexander van der Grinten, Henning Meyerhenke, Jesper Larsson Träff, and Christian Schulz. High-Quality Hierarchical Process Mapping. In 18th International Symposium on Experimental Algorithms (SEA 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 160, pp. 4:1-4:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{faraj_et_al:LIPIcs.SEA.2020.4,
  author =	{Faraj, Marcelo Fonseca and van der Grinten, Alexander and Meyerhenke, Henning and Tr\"{a}ff, Jesper Larsson and Schulz, Christian},
  title =	{{High-Quality Hierarchical Process Mapping}},
  booktitle =	{18th International Symposium on Experimental Algorithms (SEA 2020)},
  pages =	{4:1--4:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-148-1},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{160},
  editor =	{Faro, Simone and Cantone, Domenico},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2020.4},
  URN =		{urn:nbn:de:0030-drops-120782},
  doi =		{10.4230/LIPIcs.SEA.2020.4},
  annote =	{Keywords: Process Mapping, Graph Partitioning, Algorithm Engineering}
}
Document
DOI: 10.4230/DagRep.8.6.19
High-Performance Graph Algorithms (Dagstuhl Seminar 18241)

Authors: Henning Meyerhenke, Richard Peng, and Ilya Safro

Published in: Dagstuhl Reports, Volume 8, Issue 6 (2019)

Abstract
This report documents the program and outcomes of Dagstuhl Seminar 18241 ``High-performance Graph Algorithms''. The seminar reflected the ongoing qualitative change how graph algorithms are used in practice due to (i) the complex structure of graphs in new and emerging applications, (ii) the size of typical inputs, and (iii) the computer systems with which graph problems are solved. This change is having a tremendous impact on the field of graph algorithms in terms of algorithm theory and implementation as well as hardware requirements and application areas. The seminar covered recent advances in all these aspects, trying to balance and mediate between theory and practice. The abstracts included in this report contain and survey recent state-of-the-art results, but also point to promising new directions for high-performance graph algorithms and their applications, both from a theoretical and a practical point of view.
Cite as

Henning Meyerhenke, Richard Peng, and Ilya Safro. High-Performance Graph Algorithms (Dagstuhl Seminar 18241). In Dagstuhl Reports, Volume 8, Issue 6, pp. 19-39, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@Article{meyerhenke_et_al:DagRep.8.6.19,
  author =	{Meyerhenke, Henning and Peng, Richard and Safro, Ilya},
  title =	{{High-Performance Graph Algorithms (Dagstuhl Seminar 18241)}},
  pages =	{19--39},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2018},
  volume =	{8},
  number =	{6},
  editor =	{Meyerhenke, Henning and Peng, Richard and Safro, Ilya},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.8.6.19},
  URN =		{urn:nbn:de:0030-drops-100475},
  doi =		{10.4230/DagRep.8.6.19},
  annote =	{Keywords: algorithm engineering, combinatorial scientific computing, graph algorithms, high-performance computing, theoretical computer science}
}
Document
DOI: 10.4230/LIPIcs.ESA.2018.42
Scalable Katz Ranking Computation in Large Static and Dynamic Graphs

Authors: Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, and Henning Meyerhenke

Published in: LIPIcs, Volume 112, 26th Annual European Symposium on Algorithms (ESA 2018)

Abstract
Network analysis defines a number of centrality measures to identify the most central nodes in a network. Fast computation of those measures is a major challenge in algorithmic network analysis. Aside from closeness and betweenness, Katz centrality is one of the established centrality measures. In this paper, we consider the problem of computing rankings for Katz centrality. In particular, we propose upper and lower bounds on the Katz score of a given node. While previous approaches relied on numerical approximation or heuristics to compute Katz centrality rankings, we construct an algorithm that iteratively improves those upper and lower bounds until a correct Katz ranking is obtained. We extend our algorithm to dynamic graphs while maintaining its correctness guarantees. Experiments demonstrate that our static graph algorithm outperforms both numerical approaches and heuristics with speedups between 1.5 x and 3.5 x, depending on the desired quality guarantees. Our dynamic graph algorithm improves upon the static algorithm for update batches of less than 10000 edges. We provide efficient parallel CPU and GPU implementations of our algorithms that enable near real-time Katz centrality computation for graphs with hundreds of millions of nodes in fractions of seconds.
Cite as

Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, and Henning Meyerhenke. Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. In 26th Annual European Symposium on Algorithms (ESA 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 112, pp. 42:1-42:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{vandergrinten_et_al:LIPIcs.ESA.2018.42,
  author =	{van der Grinten, Alexander and Bergamini, Elisabetta and Green, Oded and Bader, David A. and Meyerhenke, Henning},
  title =	{{Scalable Katz Ranking Computation in Large Static and Dynamic Graphs}},
  booktitle =	{26th Annual European Symposium on Algorithms (ESA 2018)},
  pages =	{42:1--42:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-081-1},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{112},
  editor =	{Azar, Yossi and Bast, Hannah and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2018.42},
  URN =		{urn:nbn:de:0030-drops-95055},
  doi =		{10.4230/LIPIcs.ESA.2018.42},
  annote =	{Keywords: network analysis, Katz centrality, top-k ranking, dynamic graphs, parallel algorithms}
}
Document
DOI: 10.4230/LIPIcs.ESA.2017.70
Maxent-Stress Optimization of 3D Biomolecular Models

Authors: Michael Wegner, Oskar Taubert, Alexander Schug, and Henning Meyerhenke

Published in: LIPIcs, Volume 87, 25th Annual European Symposium on Algorithms (ESA 2017)

Abstract
Knowing a biomolecule's structure is inherently linked to and a prerequisite for any detailed understanding of its function. Significant effort has gone into developing technologies for structural characterization. These technologies do not directly provide 3D structures; instead they typically yield noisy and erroneous distance information between specific entities such as atoms or residues, which have to be translated into consistent 3D models. Here we present an approach for this translation process based on maxent-stress optimization. Our new approach extends the original graph drawing method for the new application's specifics by introducing additional constraints and confidence values as well as algorithmic components. Extensive experiments demonstrate that our approach infers structural models (i.e., sensible 3D coordinates for the molecule's atoms) that correspond well to the distance information, can handle noisy and error-prone data, and is considerably faster than established tools. Our results promise to allow domain scientists nearly-interactive structural modeling based on distance constraints.
Cite as

Michael Wegner, Oskar Taubert, Alexander Schug, and Henning Meyerhenke. Maxent-Stress Optimization of 3D Biomolecular Models. In 25th Annual European Symposium on Algorithms (ESA 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 87, pp. 70:1-70:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{wegner_et_al:LIPIcs.ESA.2017.70,
  author =	{Wegner, Michael and Taubert, Oskar and Schug, Alexander and Meyerhenke, Henning},
  title =	{{Maxent-Stress Optimization of 3D Biomolecular Models}},
  booktitle =	{25th Annual European Symposium on Algorithms (ESA 2017)},
  pages =	{70:1--70:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-049-1},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{87},
  editor =	{Pruhs, Kirk and Sohler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2017.70},
  URN =		{urn:nbn:de:0030-drops-78175},
  doi =		{10.4230/LIPIcs.ESA.2017.70},
  annote =	{Keywords: Distance geometry, protein structure determination, 3D graph drawing, maxent-stress optimization}
}
Document
DOI: 10.4230/LIPIcs.SEA.2017.23
Faster Betweenness Centrality Updates in Evolving Networks

Authors: Elisabetta Bergamini, Henning Meyerhenke, Mark Ortmann, and Arie Slobbe

Published in: LIPIcs, Volume 75, 16th International Symposium on Experimental Algorithms (SEA 2017)

Abstract
Finding central nodes is a fundamental problem in network analysis. Betweenness centrality is a well-known measure which quantifies the importance of a node based on the fraction of shortest paths going though it. Due to the dynamic nature of many today’s networks, algorithms that quickly update centrality scores have become a necessity. For betweenness, several dynamic algorithms have been proposed over the years, targeting different update types (incremental- and decremental-only, fully-dynamic). In this paper we introduce a new dynamic algorithm for updating betweenness centrality after an edge insertion or an edge weight decrease. Our method is a combination of two independent contributions: a faster algorithm for updating pairwise distances as well as number of shortest paths, and a faster algorithm for updating dependencies. Whereas the worst-case running time of our algorithm is the same as recomputation, our techniques considerably reduce the number of operations performed by existing dynamic betweenness algorithms. Our experimental evaluation on a variety of real-world networks reveals that our approach is significantly faster than the current state-of-the-art dynamic algorithms, approximately by one order of magnitude on average.
Cite as

Elisabetta Bergamini, Henning Meyerhenke, Mark Ortmann, and Arie Slobbe. Faster Betweenness Centrality Updates in Evolving Networks. In 16th International Symposium on Experimental Algorithms (SEA 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 75, pp. 23:1-23:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{bergamini_et_al:LIPIcs.SEA.2017.23,
  author =	{Bergamini, Elisabetta and Meyerhenke, Henning and Ortmann, Mark and Slobbe, Arie},
  title =	{{Faster Betweenness Centrality Updates in Evolving Networks}},
  booktitle =	{16th International Symposium on Experimental Algorithms (SEA 2017)},
  pages =	{23:1--23:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-036-1},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{75},
  editor =	{Iliopoulos, Costas S. and Pissis, Solon P. and Puglisi, Simon J. and Raman, Rajeev},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2017.23},
  URN =		{urn:nbn:de:0030-drops-76093},
  doi =		{10.4230/LIPIcs.SEA.2017.23},
  annote =	{Keywords: Graph algorithms, shortest paths, distances, dynamic algorithms}
}
Document
DOI: 10.4230/DagRep.4.11.40
High-performance Graph Algorithms and Applications in Computational Science (Dagstuhl Seminar 14461)

Authors: Ulrich Carsten Meyer, Henning Meyerhenke, Ali Pinar, and Ilya Safro

Published in: Dagstuhl Reports, Volume 4, Issue 11 (2015)

Abstract
This report documents the program and the outcomes of Dagstuhl Seminar 14461 "High- performance Graph Algorithms and Applications in Computational Science". The seminar reflected the recent qualitative change how graph algorithms are used in practice due to (i) the complex structure of graphs in new and emerging applications, (ii) the size of typical inputs, and (iii) the computer systems on which graph problems are solved. This change is having a tremendous impact on the field of graph algorithms in terms of algorithm theory and implementation as well as hardware requirements and application areas. The seminar covered recent advances in all these aspects with a focus on practical algorithms and their efficient implementation for large-scale problems. The abstracts included in this report contain recent state-of-the-art results, but also point to promising new directions for high-performance graph algorithms and their applications.
Cite as

Ulrich Carsten Meyer, Henning Meyerhenke, Ali Pinar, and Ilya Safro. High-performance Graph Algorithms and Applications in Computational Science (Dagstuhl Seminar 14461). In Dagstuhl Reports, Volume 4, Issue 11, pp. 40-58, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2015)

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@Article{meyer_et_al:DagRep.4.11.40,
  author =	{Meyer, Ulrich Carsten and Meyerhenke, Henning and Pinar, Ali and Safro, Ilya},
  title =	{{High-performance Graph Algorithms and Applications in Computational Science (Dagstuhl Seminar 14461)}},
  pages =	{40--58},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2015},
  volume =	{4},
  number =	{11},
  editor =	{Meyer, Ulrich Carsten and Meyerhenke, Henning and Pinar, Ali and Safro, Ilya},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.4.11.40},
  URN =		{urn:nbn:de:0030-drops-49697},
  doi =		{10.4230/DagRep.4.11.40},
  annote =	{Keywords: graphs, graph algorithms, graph theory, computational science, complex networks, network science, graph partitioning, linear algebra, parallel program}
}
Document
DOI: 10.4230/DagSemProc.10261.4
On Dynamic Graph Partitioning and Graph Clustering using Diffusion

Authors: Henning Meyerhenke and Joachim Gehweiler

Published in: Dagstuhl Seminar Proceedings, Volume 10261, Algorithm Engineering (2010)

Abstract
Load balancing is an important requirement for the efficient execution of parallel numerical simulations. In particular when the simulation domain changes over time, the mapping of computational tasks to processors needs to be modified accordingly. State-of-the-art libraries for this problem are based on graph repartitioning. They have a number of drawbacks, including the optimized metric and the difficulty of parallelizing the popular repartitioning heuristic Kernighan-Lin (KL). Here we further explore the very promising diffusion-based graph partitioning algorithm DIBAP (Meyerhenke et al., JPDC 69(9):750–761, 2009) by adapting DIBAP to the related problem of load balancing. The presented experiments with graph sequences that imitate adaptive numerical simulations demonstrate the applicability and high quality of DIBAP for load balancing by repartitioning. Compared to the faster state-of-the-art repartitioners PARMETIS and parallel JOSTLE, DIBAP’s solutions have partitions with significantly fewer external edges and boundary nodes and the resulting average migration volume in the important maximum norm is also the best in most cases. We also prove that one of DIBAP's key components optimizes a relaxed version of the minimum edge cut problem. Moreover, we hint at a distributed algorithm based on ideas used in DIBAP for clustering a virtual P2P supercomputer.
Cite as

Henning Meyerhenke and Joachim Gehweiler. On Dynamic Graph Partitioning and Graph Clustering using Diffusion. In Algorithm Engineering. Dagstuhl Seminar Proceedings, Volume 10261, pp. 1-19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)

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@InProceedings{meyerhenke_et_al:DagSemProc.10261.4,
  author =	{Meyerhenke, Henning and Gehweiler, Joachim},
  title =	{{On Dynamic Graph Partitioning and Graph Clustering using Diffusion}},
  booktitle =	{Algorithm Engineering},
  pages =	{1--19},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10261},
  editor =	{Giuseppe F. Italiano and David S. Johnson and Petra Mutzel and Peter Sanders},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10261.4},
  URN =		{urn:nbn:de:0030-drops-27980},
  doi =		{10.4230/DagSemProc.10261.4},
  annote =	{Keywords: Dynamic graph partitioning/clustering, disturbed diffusion, load balancing, relaxed cut optimization}
}
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