9 Search Results for "Munch, Elizabeth"


Document
Tensor Computation of Euler Characteristic Functions and Transforms

Authors: Jessi Cisewski-Kehe, Brittany Terese Fasy, Alexander McCleary, and Eli Quist

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
The weighted Euler characteristic transform (WECT) and Euler characteristic function (ECF) have proven to be useful tools in a variety of applications. However, current methods for computing these functions are either not optimized for GPU computation or do not scale to higher-dimensional settings. In this work, we present a tensor-based framework for computing such topological descriptors which is highly optimized for GPU architectures and works in full generality across simplicial and cubical complexes of arbitrary dimension. Experimentally, the framework demonstrates significant speedups over existing methods when computing the WECT and ECF across a variety of two- and three-dimensional datasets. Computation of these transforms is implemented in a publicly available Python package called pyECT.

Cite as

Jessi Cisewski-Kehe, Brittany Terese Fasy, Alexander McCleary, and Eli Quist. Tensor Computation of Euler Characteristic Functions and Transforms. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 32:1-32:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{cisewskikehe_et_al:LIPIcs.SoCG.2026.32,
  author =	{Cisewski-Kehe, Jessi and Fasy, Brittany Terese and McCleary, Alexander and Quist, Eli},
  title =	{{Tensor Computation of Euler Characteristic Functions and Transforms}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{32:1--32:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.32},
  URN =		{urn:nbn:de:0030-drops-258380},
  doi =		{10.4230/LIPIcs.SoCG.2026.32},
  annote =	{Keywords: Topological data analysis, weighted Euler characteristic transform, Euler characteristic function, tensor computation, GPU computation}
}
Document
Computing the Bottleneck Distance Between Persistent Homology Transforms

Authors: Michael Kerber and Elena Xinyi Wang

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
The Persistent Homology Transform (PHT) summarizes a shape in ℝ^m by collecting persistence diagrams obtained from linear height filtrations in all directions on 𝕊^{m-1}. It enjoys strong theoretical guarantees, including continuity, stability, and injectivity. A natural way to compare two PHTs is to use the bottleneck distance between their diagrams as the direction varies. Prior work has either compared PHTs by sampling directions or, in 2D, computed the exact integral of bottleneck distance over all angles via a kinetic data structure. We improve the integral objective to Õ(n⁵) in place of the earlier Õ(n⁶) bound, where n denotes the number of simplices. For the max objective, we give an Õ(n³) expected-time algorithm in ℝ² and an Õ(n⁵) expected-time algorithm in ℝ³.

Cite as

Michael Kerber and Elena Xinyi Wang. Computing the Bottleneck Distance Between Persistent Homology Transforms. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 62:1-62:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{kerber_et_al:LIPIcs.SoCG.2026.62,
  author =	{Kerber, Michael and Wang, Elena Xinyi},
  title =	{{Computing the Bottleneck Distance Between Persistent Homology Transforms}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{62:1--62:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.62},
  URN =		{urn:nbn:de:0030-drops-258693},
  doi =		{10.4230/LIPIcs.SoCG.2026.62},
  annote =	{Keywords: Kinetic data structure, bottleneck distance, persistent homology transform, vineyards}
}
Document
Mapping Chemical Space: Topological Data Analysis of Chemical Latent Space with Mapper

Authors: Dhruv Meduri, Chuan-Shen Hu, Cong Shen, Kelin Xia, and Bei Wang

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
The vast chemical space, encompassing virtually innumerable molecules and materials, presents both immense opportunities and significant challenges. The design and discovery of novel drugs and functional materials may be viewed as a search within this space; however, the sheer scale of potential candidates renders exhaustive exploration infeasible. To address this, we introduce Chemical Mapper, a framework that integrates topological data analysis with deep learning to enable the visual exploration and analysis of chemical latent spaces. At its core, Chemical Mapper employs mapper, a widely used tool in topological data analysis, to investigate the organizational principles of chemical latent spaces defined by molecular representations learned by geometric deep learning models. In doing so, Chemical Mapper not only highlights groups of molecular representations but also uncovers the relationships among them through linkages and branching structures. Our results show that Chemical Mapper reveals intrinsic patterns associated with molecular scaffolds, functional groups, and chemical properties, as well as the structural and functional evolutions of the molecules.

Cite as

Dhruv Meduri, Chuan-Shen Hu, Cong Shen, Kelin Xia, and Bei Wang. Mapping Chemical Space: Topological Data Analysis of Chemical Latent Space with Mapper. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 78:1-78:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{meduri_et_al:LIPIcs.SoCG.2026.78,
  author =	{Meduri, Dhruv and Hu, Chuan-Shen and Shen, Cong and Xia, Kelin and Wang, Bei},
  title =	{{Mapping Chemical Space: Topological Data Analysis of Chemical Latent Space with Mapper}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{78:1--78:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.78},
  URN =		{urn:nbn:de:0030-drops-258854},
  doi =		{10.4230/LIPIcs.SoCG.2026.78},
  annote =	{Keywords: Practice of computational topology, topological data analysis, applications in chemistry, mapper algorithm, high-dimensional data analysis, chemical spaces, geometric deep learning, latent space geometry}
}
Document
A Persistent Version of Latschev’s Theorem

Authors: Steve Oudot and Lukas Waas

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
Latschev’s theorem provides sufficient conditions on a metric space M and δ > 0 for the homotopy type of M to agree with that of the Vietoris-Rips complex ℛ^δ(𝕄) of any nearby space 𝕄 in the Gromov-Hausdorff distance. We prove a persistent version of this theorem, providing sufficient conditions on a pair (M, f:M → ℝ^N) and δ > 0 for the persistent homotopy type of the sublevel set filtration of (M, f) to be interleaved with that of the function-Rips complex ℛ^δ(𝕄^•) of any nearby pair (𝕄, 𝕗). In particular, our result answers a longstanding question on the related topic of estimating sublevel set persistent homology from finite point samples.

Cite as

Steve Oudot and Lukas Waas. A Persistent Version of Latschev’s Theorem. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 82:1-82:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{oudot_et_al:LIPIcs.SoCG.2026.82,
  author =	{Oudot, Steve and Waas, Lukas},
  title =	{{A Persistent Version of Latschev’s Theorem}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{82:1--82:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.82},
  URN =		{urn:nbn:de:0030-drops-258891},
  doi =		{10.4230/LIPIcs.SoCG.2026.82},
  annote =	{Keywords: Topological data analysis (TDA), metric geometry, Vietoris-Rips complex, homotopy theory, multi-parameter persistent homology}
}
Document
Bifunction and Interlevel Delaunay Trifiltrations

Authors: Ángel Javier Alonso, Michael Kerber, Tung Lam, Michael Lesnick, and Abhishek Rathod

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
A key property of the Delaunay filtration is that it is topologically (i.e., weakly) equivalent to the offset (union-of-balls) filtration. Recently, this filtration has been extended to point clouds equipped with an ℝ-valued function, yielding a computable 2-parameter filtration that satisfies an analogous weak equivalence. Motivated in part by the study of time-varying data, we introduce a 3-parameter extension of the Delaunay filtration for point clouds equipped with an ℝ²-valued function, also satisfying an analogous weak equivalence. For a point cloud X ⊂ ℝ^d, our trifiltration has size O(|X|^{⌈(d+1)/2⌉+1}). We present an algorithm that computes this trifiltration in time O(|X|^{⌈d/2⌉+2}), together with an implementation. Our experiments demonstrate that the implementation can handle thousands of points in ℝ³, with memory growth that is nearly linear.

Cite as

Ángel Javier Alonso, Michael Kerber, Tung Lam, Michael Lesnick, and Abhishek Rathod. Bifunction and Interlevel Delaunay Trifiltrations. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 5:1-5:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{alonso_et_al:LIPIcs.SoCG.2026.5,
  author =	{Alonso, \'{A}ngel Javier and Kerber, Michael and Lam, Tung and Lesnick, Michael and Rathod, Abhishek},
  title =	{{Bifunction and Interlevel Delaunay Trifiltrations}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{5:1--5:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.5},
  URN =		{urn:nbn:de:0030-drops-258118},
  doi =		{10.4230/LIPIcs.SoCG.2026.5},
  annote =	{Keywords: Delaunay triangulation, Multiparameter persistent homology, Interlevel, Bowyer-Watson}
}
Document
Heuristics for Exact 1-Planarity Testing

Authors: Simon D. Fink, Miriam Münch, Matthias Pfretzschner, and Ignaz Rutter

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)


Abstract
Since many real-world graphs are nonplanar, the study of graphs that allow few crossings per edge has been an active subfield of graph theory in recent years. One of the most natural generalizations of planar graphs are the so-called 1-planar graphs that admit a drawing with at most one crossing per edge. Unfortunately, testing whether a graph is 1-planar is known to be NP-complete even for very restricted graph classes. On the positive side, Binucci, Didimo and Montecchiani [Binucci et al., 2023] presented the first practical algorithm for testing 1-planarity based on an easy-to-implement backtracking strategy. We build on this idea and systematically explore the design choices of such algorithms and propose several new ingredients, such as different branching strategies and multiple filter criteria that allow us to reject certain branches in the search tree early on. We conduct an extensive experimental evaluation that evaluates the efficiency and effectiveness of these ingredients. Given a time limit of three hours per instance, our best configuration is able to solve more than 95% of the non-planar instances from the well-known North and Rome graphs with up to 50 vertices. Notably, the median running time for solved instances is well below 4 seconds.

Cite as

Simon D. Fink, Miriam Münch, Matthias Pfretzschner, and Ignaz Rutter. Heuristics for Exact 1-Planarity Testing. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 4:1-4:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{fink_et_al:LIPIcs.GD.2025.4,
  author =	{Fink, Simon D. and M\"{u}nch, Miriam and Pfretzschner, Matthias and Rutter, Ignaz},
  title =	{{Heuristics for Exact 1-Planarity Testing}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{4:1--4:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.4},
  URN =		{urn:nbn:de:0030-drops-249909},
  doi =		{10.4230/LIPIcs.GD.2025.4},
  annote =	{Keywords: 1-Planarity, Experiments, Backtracking}
}
Document
A Family of Metrics from the Truncated Smoothing of Reeb Graphs

Authors: Erin Wolf Chambers, Elizabeth Munch, and Tim Ophelders

Published in: LIPIcs, Volume 189, 37th International Symposium on Computational Geometry (SoCG 2021)


Abstract
In this paper, we introduce an extension of smoothing on Reeb graphs, which we call truncated smoothing; this in turn allows us to define a new family of metrics which generalize the interleaving distance for Reeb graphs. Intuitively, we "chop off" parts near local minima and maxima during the course of smoothing, where the amount cut is controlled by a parameter τ. After formalizing truncation as a functor, we show that when applied after the smoothing functor, this prevents extensive expansion of the range of the function, and yields particularly nice properties (such as maintaining connectivity) when combined with smoothing for 0 ≤ τ ≤ 2ε, where ε is the smoothing parameter. Then, for the restriction of τ ∈ [0,ε], we have additional structure which we can take advantage of to construct a categorical flow for any choice of slope m ∈ [0,1]. Using the infrastructure built for a category with a flow, this then gives an interleaving distance for every m ∈ [0,1], which is a generalization of the original interleaving distance, which is the case m = 0. While the resulting metrics are not stable, we show that any pair of these for m, m' ∈ [0,1) are strongly equivalent metrics, which in turn gives stability of each metric up to a multiplicative constant. We conclude by discussing implications of this metric within the broader family of metrics for Reeb graphs.

Cite as

Erin Wolf Chambers, Elizabeth Munch, and Tim Ophelders. A Family of Metrics from the Truncated Smoothing of Reeb Graphs. In 37th International Symposium on Computational Geometry (SoCG 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 189, pp. 22:1-22:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)


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@InProceedings{chambers_et_al:LIPIcs.SoCG.2021.22,
  author =	{Chambers, Erin Wolf and Munch, Elizabeth and Ophelders, Tim},
  title =	{{A Family of Metrics from the Truncated Smoothing of Reeb Graphs}},
  booktitle =	{37th International Symposium on Computational Geometry (SoCG 2021)},
  pages =	{22:1--22:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-184-9},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{189},
  editor =	{Buchin, Kevin and Colin de Verdi\`{e}re, \'{E}ric},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2021.22},
  URN =		{urn:nbn:de:0030-drops-138218},
  doi =		{10.4230/LIPIcs.SoCG.2021.22},
  annote =	{Keywords: Reeb graphs, interleaving distance, graphical signatures}
}
Document
Convergence between Categorical Representations of Reeb Space and Mapper

Authors: Elizabeth Munch and Bei Wang

Published in: LIPIcs, Volume 51, 32nd International Symposium on Computational Geometry (SoCG 2016)


Abstract
The Reeb space, which generalizes the notion of a Reeb graph, is one of the few tools in topological data analysis and visualization suitable for the study of multivariate scientific datasets. First introduced by Edelsbrunner et al., it compresses the components of the level sets of a multivariate mapping and obtains a summary representation of their relationships. A related construction called mapper, and a special case of the mapper construction called the Joint Contour Net have been shown to be effective in visual analytics. Mapper and JCN are intuitively regarded as discrete approximations of the Reeb space, however without formal proofs or approximation guarantees. An open question has been proposed by Dey et al. as to whether the mapper construction converges to the Reeb space in the limit. In this paper, we are interested in developing the theoretical understanding of the relationship between the Reeb space and its discrete approximations to support its use in practical data analysis. Using tools from category theory, we formally prove the convergence between the Reeb space and mapper in terms of an interleaving distance between their categorical representations. Given a sequence of refined discretizations, we prove that these approximations converge to the Reeb space in the interleaving distance; this also helps to quantify the approximation quality of the discretization at a fixed resolution.

Cite as

Elizabeth Munch and Bei Wang. Convergence between Categorical Representations of Reeb Space and Mapper. In 32nd International Symposium on Computational Geometry (SoCG 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 51, pp. 53:1-53:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)


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@InProceedings{munch_et_al:LIPIcs.SoCG.2016.53,
  author =	{Munch, Elizabeth and Wang, Bei},
  title =	{{Convergence between Categorical Representations of Reeb Space and Mapper}},
  booktitle =	{32nd International Symposium on Computational Geometry (SoCG 2016)},
  pages =	{53:1--53:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-009-5},
  ISSN =	{1868-8969},
  year =	{2016},
  volume =	{51},
  editor =	{Fekete, S\'{a}ndor and Lubiw, Anna},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2016.53},
  URN =		{urn:nbn:de:0030-drops-59454},
  doi =		{10.4230/LIPIcs.SoCG.2016.53},
  annote =	{Keywords: Topological data analysis, Reeb space, mapper, category theory}
}
Document
Strong Equivalence of the Interleaving and Functional Distortion Metrics for Reeb Graphs

Authors: Ulrich Bauer, Elizabeth Munch, and Yusu Wang

Published in: LIPIcs, Volume 34, 31st International Symposium on Computational Geometry (SoCG 2015)


Abstract
The Reeb graph is a construction that studies a topological space through the lens of a real valued function. It has been commonly used in applications, however its use on real data means that it is desirable and increasingly necessary to have methods for comparison of Reeb graphs. Recently, several metrics on the set of Reeb graphs have been proposed. In this paper, we focus on two: the functional distortion distance and the interleaving distance. The former is based on the Gromov-Hausdorff distance, while the latter utilizes the equivalence between Reeb graphs and a particular class of cosheaves. However, both are defined by constructing a near-isomorphism between the two graphs of study. In this paper, we show that the two metrics are strongly equivalent on the space of Reeb graphs. Our result also implies the bottleneck stability for persistence diagrams in terms of the Reeb graph interleaving distance.

Cite as

Ulrich Bauer, Elizabeth Munch, and Yusu Wang. Strong Equivalence of the Interleaving and Functional Distortion Metrics for Reeb Graphs. In 31st International Symposium on Computational Geometry (SoCG 2015). Leibniz International Proceedings in Informatics (LIPIcs), Volume 34, pp. 461-475, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2015)


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@InProceedings{bauer_et_al:LIPIcs.SOCG.2015.461,
  author =	{Bauer, Ulrich and Munch, Elizabeth and Wang, Yusu},
  title =	{{Strong Equivalence of the Interleaving and Functional Distortion Metrics for Reeb Graphs}},
  booktitle =	{31st International Symposium on Computational Geometry (SoCG 2015)},
  pages =	{461--475},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-939897-83-5},
  ISSN =	{1868-8969},
  year =	{2015},
  volume =	{34},
  editor =	{Arge, Lars and Pach, J\'{a}nos},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SOCG.2015.461},
  URN =		{urn:nbn:de:0030-drops-51467},
  doi =		{10.4230/LIPIcs.SOCG.2015.461},
  annote =	{Keywords: Reeb graph, interleaving distance, functional distortion distance}
}
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