Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)
Andreas Grigorjew, Fernando H. C. Dias, Andrea Cracco, Romeo Rizzi, and Alexandru I. Tomescu. Accelerating ILP Solvers for Minimum Flow Decompositions Through Search Space and Dimensionality Reductions. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{grigorjew_et_al:LIPIcs.SEA.2024.14, author = {Grigorjew, Andreas and Dias, Fernando H. C. and Cracco, Andrea and Rizzi, Romeo and Tomescu, Alexandru I.}, title = {{Accelerating ILP Solvers for Minimum Flow Decompositions Through Search Space and Dimensionality Reductions}}, booktitle = {22nd International Symposium on Experimental Algorithms (SEA 2024)}, pages = {14:1--14:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-325-6}, ISSN = {1868-8969}, year = {2024}, volume = {301}, editor = {Liberti, Leo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.14}, URN = {urn:nbn:de:0030-drops-203792}, doi = {10.4230/LIPIcs.SEA.2024.14}, annote = {Keywords: Flow decomposition, Integer Linear Programming, Safety, RNA-seq, RNA transcript assembly, isoform} }
Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)
Frederik L. Jatzkowski, Antonia Schmidt, Robert Mank, Steffen Schüler, and Matthias Müller-Hannemann. Barcode Selection and Layout Optimization in Spatial Transcriptomics. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 17:1-17:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{jatzkowski_et_al:LIPIcs.SEA.2024.17, author = {Jatzkowski, Frederik L. and Schmidt, Antonia and Mank, Robert and Sch\"{u}ler, Steffen and M\"{u}ller-Hannemann, Matthias}, title = {{Barcode Selection and Layout Optimization in Spatial Transcriptomics}}, booktitle = {22nd International Symposium on Experimental Algorithms (SEA 2024)}, pages = {17:1--17:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-325-6}, ISSN = {1868-8969}, year = {2024}, volume = {301}, editor = {Liberti, Leo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.17}, URN = {urn:nbn:de:0030-drops-203821}, doi = {10.4230/LIPIcs.SEA.2024.17}, annote = {Keywords: Spatial Transcriptomics, Array Layout, Optimization, Computational Complexity, GPU Computing, Integer Linear Programming, Metaheuristics} }
Published in: LIPIcs, Volume 298, 36th Euromicro Conference on Real-Time Systems (ECRTS 2024)
Anam Farrukh and Richard West. JuMP2start: Time-Aware Stop-Start Technology for a Software-Defined Vehicle System. In 36th Euromicro Conference on Real-Time Systems (ECRTS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 298, pp. 1:1-1:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{farrukh_et_al:LIPIcs.ECRTS.2024.1, author = {Farrukh, Anam and West, Richard}, title = {{JuMP2start: Time-Aware Stop-Start Technology for a Software-Defined Vehicle System}}, booktitle = {36th Euromicro Conference on Real-Time Systems (ECRTS 2024)}, pages = {1:1--1:27}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-324-9}, ISSN = {1868-8969}, year = {2024}, volume = {298}, editor = {Pellizzoni, Rodolfo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2024.1}, URN = {urn:nbn:de:0030-drops-203046}, doi = {10.4230/LIPIcs.ECRTS.2024.1}, annote = {Keywords: Time-aware stop-start, Real-time power management, Suspend-to-RAM, Partitioning hypervisor, Vehicle management system, Vehicle-OS, Software-defined vehicles (SDV)} }
Published in: TGDK, Volume 2, Issue 1 (2024): Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge, Volume 2, Issue 1
Pieter Bonte, Jean-Paul Calbimonte, Daniel de Leng, Daniele Dell'Aglio, Emanuele Della Valle, Thomas Eiter, Federico Giannini, Fredrik Heintz, Konstantin Schekotihin, Danh Le-Phuoc, Alessandra Mileo, Patrik Schneider, Riccardo Tommasini, Jacopo Urbani, and Giacomo Ziffer. Grounding Stream Reasoning Research. In Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 1, pp. 2:1-2:47, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@Article{bonte_et_al:TGDK.2.1.2, author = {Bonte, Pieter and Calbimonte, Jean-Paul and de Leng, Daniel and Dell'Aglio, Daniele and Della Valle, Emanuele and Eiter, Thomas and Giannini, Federico and Heintz, Fredrik and Schekotihin, Konstantin and Le-Phuoc, Danh and Mileo, Alessandra and Schneider, Patrik and Tommasini, Riccardo and Urbani, Jacopo and Ziffer, Giacomo}, title = {{Grounding Stream Reasoning Research}}, journal = {Transactions on Graph Data and Knowledge}, pages = {2:1--2:47}, ISSN = {2942-7517}, year = {2024}, volume = {2}, number = {1}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.1.2}, URN = {urn:nbn:de:0030-drops-198597}, doi = {10.4230/TGDK.2.1.2}, annote = {Keywords: Stream Reasoning, Stream Processing, RDF streams, Streaming Linked Data, Continuous query processing, Temporal Logics, High-performance computing, Databases} }
Published in: LIPIcs, Volume 259, 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)
Itai Boneh, Dvir Fried, Adrian Miclăuş, and Alexandru Popa. Faster Algorithms for Computing the Hairpin Completion Distance and Minimum Ancestor. In 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 259, pp. 5:1-5:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{boneh_et_al:LIPIcs.CPM.2023.5, author = {Boneh, Itai and Fried, Dvir and Micl\u{a}u\c{s}, Adrian and Popa, Alexandru}, title = {{Faster Algorithms for Computing the Hairpin Completion Distance and Minimum Ancestor}}, booktitle = {34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)}, pages = {5:1--5:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-276-1}, ISSN = {1868-8969}, year = {2023}, volume = {259}, editor = {Bulteau, Laurent and Lipt\'{a}k, Zsuzsanna}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2023.5}, URN = {urn:nbn:de:0030-drops-179592}, doi = {10.4230/LIPIcs.CPM.2023.5}, annote = {Keywords: dynamic programming, incremental trees, exact algorithm} }
Published in: LIPIcs, Volume 259, 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)
Matan Kraus, Moshe Lewenstein, Alexandru Popa, Ely Porat, and Yonathan Sadia. String Factorization via Prefix Free Families. In 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 259, pp. 19:1-19:10, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{kraus_et_al:LIPIcs.CPM.2023.19, author = {Kraus, Matan and Lewenstein, Moshe and Popa, Alexandru and Porat, Ely and Sadia, Yonathan}, title = {{String Factorization via Prefix Free Families}}, booktitle = {34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023)}, pages = {19:1--19:10}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-276-1}, ISSN = {1868-8969}, year = {2023}, volume = {259}, editor = {Bulteau, Laurent and Lipt\'{a}k, Zsuzsanna}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2023.19}, URN = {urn:nbn:de:0030-drops-179738}, doi = {10.4230/LIPIcs.CPM.2023.19}, annote = {Keywords: string factorization, NP-hard problem, approximation algorithm} }
Published in: LIPIcs, Volume 223, 33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022)
Yuichi Asahiro, Jesper Jansson, Guohui Lin, Eiji Miyano, Hirotaka Ono, and Tadatoshi Utashima. Polynomial-Time Equivalences and Refined Algorithms for Longest Common Subsequence Variants. In 33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 223, pp. 15:1-15:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{asahiro_et_al:LIPIcs.CPM.2022.15, author = {Asahiro, Yuichi and Jansson, Jesper and Lin, Guohui and Miyano, Eiji and Ono, Hirotaka and Utashima, Tadatoshi}, title = {{Polynomial-Time Equivalences and Refined Algorithms for Longest Common Subsequence Variants}}, booktitle = {33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022)}, pages = {15:1--15:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-234-1}, ISSN = {1868-8969}, year = {2022}, volume = {223}, editor = {Bannai, Hideo and Holub, Jan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2022.15}, URN = {urn:nbn:de:0030-drops-161424}, doi = {10.4230/LIPIcs.CPM.2022.15}, annote = {Keywords: Repetition-bounded longest common subsequence problem, multiset restricted longest common subsequence problem, one-side-filled longest common subsequence problem, two-side-filled longest common subsequence problem, exact algorithms, and approximation algorithms} }
Published in: LIPIcs, Volume 191, 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021)
Andrei Popa and Alexandru Popa. Efficient Algorithms for Counting Gapped Palindromes. In 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 191, pp. 23:1-23:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{popa_et_al:LIPIcs.CPM.2021.23, author = {Popa, Andrei and Popa, Alexandru}, title = {{Efficient Algorithms for Counting Gapped Palindromes}}, booktitle = {32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021)}, pages = {23:1--23:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-186-3}, ISSN = {1868-8969}, year = {2021}, volume = {191}, editor = {Gawrychowski, Pawe{\l} and Starikovskaya, Tatiana}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2021.23}, URN = {urn:nbn:de:0030-drops-139746}, doi = {10.4230/LIPIcs.CPM.2021.23}, annote = {Keywords: pattern matching, gapped palindromes, suffix tree} }
Published in: LIPIcs, Volume 170, 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)
Saeed Akhoondian Amiri, Alexandru Popa, Mohammad Roghani, Golnoosh Shahkarami, Reza Soltani, and Hossein Vahidi. Complexity of Computing the Anti-Ramsey Numbers for Paths. In 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 170, pp. 6:1-6:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)
@InProceedings{akhoondianamiri_et_al:LIPIcs.MFCS.2020.6, author = {Akhoondian Amiri, Saeed and Popa, Alexandru and Roghani, Mohammad and Shahkarami, Golnoosh and Soltani, Reza and Vahidi, Hossein}, title = {{Complexity of Computing the Anti-Ramsey Numbers for Paths}}, booktitle = {45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)}, pages = {6:1--6:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-159-7}, ISSN = {1868-8969}, year = {2020}, volume = {170}, editor = {Esparza, Javier and Kr\'{a}l', Daniel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2020.6}, URN = {urn:nbn:de:0030-drops-126781}, doi = {10.4230/LIPIcs.MFCS.2020.6}, annote = {Keywords: Coloring, Anti-Ramsey, Approximation, NP-hard, Algorithm, ETH} }
Published in: LIPIcs, Volume 123, 29th International Symposium on Algorithms and Computation (ISAAC 2018)
Guillaume Ducoffe and Alexandru Popa. The Use of a Pruned Modular Decomposition for Maximum Matching Algorithms on Some Graph Classes. In 29th International Symposium on Algorithms and Computation (ISAAC 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 123, pp. 6:1-6:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@InProceedings{ducoffe_et_al:LIPIcs.ISAAC.2018.6, author = {Ducoffe, Guillaume and Popa, Alexandru}, title = {{The Use of a Pruned Modular Decomposition for Maximum Matching Algorithms on Some Graph Classes}}, booktitle = {29th International Symposium on Algorithms and Computation (ISAAC 2018)}, pages = {6:1--6:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-094-1}, ISSN = {1868-8969}, year = {2018}, volume = {123}, editor = {Hsu, Wen-Lian and Lee, Der-Tsai and Liao, Chung-Shou}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2018.6}, URN = {urn:nbn:de:0030-drops-99549}, doi = {10.4230/LIPIcs.ISAAC.2018.6}, annote = {Keywords: maximum matching, FPT in P, modular decomposition, pruned graphs, one-vertex extensions, P\underline4-structure} }
Published in: LIPIcs, Volume 123, 29th International Symposium on Algorithms and Computation (ISAAC 2018)
Guillaume Ducoffe and Alexandru Popa. The b-Matching Problem in Distance-Hereditary Graphs and Beyond. In 29th International Symposium on Algorithms and Computation (ISAAC 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 123, pp. 30:1-30:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@InProceedings{ducoffe_et_al:LIPIcs.ISAAC.2018.30, author = {Ducoffe, Guillaume and Popa, Alexandru}, title = {{The b-Matching Problem in Distance-Hereditary Graphs and Beyond}}, booktitle = {29th International Symposium on Algorithms and Computation (ISAAC 2018)}, pages = {30:1--30:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-094-1}, ISSN = {1868-8969}, year = {2018}, volume = {123}, editor = {Hsu, Wen-Lian and Lee, Der-Tsai and Liao, Chung-Shou}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2018.30}, URN = {urn:nbn:de:0030-drops-99783}, doi = {10.4230/LIPIcs.ISAAC.2018.30}, annote = {Keywords: maximum-cardinality matching, b-matching, FPT in P, split decomposition, distance-hereditary graphs} }
Published in: LIPIcs, Volume 46, 19th International Conference on Principles of Distributed Systems (OPODIS 2015)
Antonio Fernández Anta, Nicolas Nicolaou, and Alexandru Popa. Making "Fast" Atomic Operations Computationally Tractable. In 19th International Conference on Principles of Distributed Systems (OPODIS 2015). Leibniz International Proceedings in Informatics (LIPIcs), Volume 46, pp. 19:1-19:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)
@InProceedings{fernandezanta_et_al:LIPIcs.OPODIS.2015.19, author = {Fern\'{a}ndez Anta, Antonio and Nicolaou, Nicolas and Popa, Alexandru}, title = {{Making "Fast" Atomic Operations Computationally Tractable}}, booktitle = {19th International Conference on Principles of Distributed Systems (OPODIS 2015)}, pages = {19:1--19:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-939897-98-9}, ISSN = {1868-8969}, year = {2016}, volume = {46}, editor = {Anceaume, Emmanuelle and Cachin, Christian and Potop-Butucaru, Maria}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.OPODIS.2015.19}, URN = {urn:nbn:de:0030-drops-66108}, doi = {10.4230/LIPIcs.OPODIS.2015.19}, annote = {Keywords: atomicity, read/write objects, shared memory, computational complexity} }