DROPS

Document

Survey

Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support

Authors: Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1

Abstract

Our culture, history and world are in constant motion, continuously shaped by the flow of time, evolving narratives, and shifting relationships. Capturing this temporal complexity within cultural heritage (CH) knowledge graphs is essential for preserving the dynamic nature of human heritage. However, standard RDF predicates fail to effectively model the temporal aspects of cultural data, such as changing facts, evolving relationships, and temporal concepts. Over the past two decades, a variety of RDF-based approaches have been proposed to address this limitation, yet guidance is missing on which method best suits specific CH contexts. This paper presents a systematic evaluation of temporal RDF modelling approaches from a CH perspective. Based on an analysis of real-world CH use cases, core temporal requirements are identified that reflect both modelling expressivity and practical concerns. Six prominent approaches - RDF*, tRDF, Named Graphs, Singleton Property, N-ary Relations, and 4D Fluents - are assessed across these requirements. Our findings reveal that no single solution fits all scenarios, but suitable approaches can be selected based on project-specific priorities. To support practitioners, a decision-support tool is introduced to guide them in selecting the most suitable extension for their specific needs. This work provides practical guidance for CH modelling and contributes to the broader development of temporally aware Linked Data.

Cite as

Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack. Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 2:1-2:46, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

Copy BibTex To Clipboard

@Article{bruns_et_al:TGDK.4.1.2,
  author =	{Bruns, Oleksandra and Waitelonis, J\"{o}rg and Pan, Jeff Z. and Sack, Harald},
  title =	{{Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:46},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.2},
  URN =		{urn:nbn:de:0030-drops-256871},
  doi =		{10.4230/TGDK.4.1.2},
  annote =	{Keywords: Temporal Data Representation, RDF Extensions, Cultural Heritage, Knowledge Graphs}
}

Document

Research

DOI: 10.4230/TGDK.4.1.3

Semantically Reflected Programs

Authors: Eduard Kamburjan, Vidar Norstein Klungre, Yuanwei Qu, Rudolf Schlatte, Egor V. Kostylev, Martin Giese, and Einar Broch Johnsen

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1

Abstract

This paper addresses the dichotomy between the formalization of structural and the formalization of executable behavioral knowledge by means of semantically lifted programs, which explore an intuitive connection between imperative programs and knowledge graphs. While knowledge graphs and ontologies are eminently useful to represent formal knowledge about a system’s individuals and universals, programming languages are designed to describe the system’s evolution. To address this dichotomy, we introduce a semantic lifting of the program states of an executing progam into a knowledge graph, for an object-oriented programming language. The resulting graph is exposed as a semantic reflection layer within the programming language, allowing programmers to leverage knowledge of the application domain in their programs during execution. In this paper, we formalize semantic lifting and semantic reflection for a small imperative programming language, SMOL, explain the operational aspects of the language, and consider type correctness and virtualization for runtime program queries through the semantic reflection layer. We illustrate semantic lifting and semantic reflection through a case study of geological modeling and discuss different applications of the technique. The language implementation is open source and available online.

Cite as

Eduard Kamburjan, Vidar Norstein Klungre, Yuanwei Qu, Rudolf Schlatte, Egor V. Kostylev, Martin Giese, and Einar Broch Johnsen. Semantically Reflected Programs. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 3:1-3:52, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

Copy BibTex To Clipboard

@Article{kamburjan_et_al:TGDK.4.1.3,
  author =	{Kamburjan, Eduard and Klungre, Vidar Norstein and Qu, Yuanwei and Schlatte, Rudolf and Kostylev, Egor V. and Giese, Martin and Johnsen, Einar Broch},
  title =	{{Semantically Reflected Programs}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:52},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.3},
  URN =		{urn:nbn:de:0030-drops-256884},
  doi =		{10.4230/TGDK.4.1.3},
  annote =	{Keywords: Knowledge Graphs, Ontologies, Object-Oriented Modelling, Imperative Programming Languages, Reflection, Type Safety}
}

Document

DOI: 10.4230/LIPIcs.STACS.2026.43

Stealing from the Dragon’s Hoard: Online Unbounded Knapsack With Removal

Authors: Matthias Gehnen and Moritz Stocker

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract

We introduce the Online Unbounded Knapsack Problem with Removal, a variation of the well-known Online Knapsack Problem. Items, each with a weight and value, arrive online and an algorithm must decide on whether or not to pack them into a knapsack with a fixed weight limit. An item may be packed an arbitrary number of times and items may be removed from the knapsack at any time without cost. The goal is to maximize the total value of items packed, while respecting a weight limit. We show that this is one of the very few natural online knapsack variants that allow for competitive deterministic algorithms in the general setting, by providing an algorithm with competitivity 1.6911. We complement this with a lower bound of 1.5877. We also analyze the proportional setting, where the weight and value of any single item agree, and show that deterministic algorithms can be exactly 3/2-competitive. Lastly, we give lower and upper bounds of 6/5 and 4/3 on the competitivity of randomized algorithms in this setting.

Cite as

Matthias Gehnen and Moritz Stocker. Stealing from the Dragon’s Hoard: Online Unbounded Knapsack With Removal. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 43:1-43:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

Copy BibTex To Clipboard

@InProceedings{gehnen_et_al:LIPIcs.STACS.2026.43,
  author =	{Gehnen, Matthias and Stocker, Moritz},
  title =	{{Stealing from the Dragon’s Hoard: Online Unbounded Knapsack With Removal}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{43:1--43:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.43},
  URN =		{urn:nbn:de:0030-drops-255327},
  doi =		{10.4230/LIPIcs.STACS.2026.43},
  annote =	{Keywords: online problems, online knapsack, unbounded knapsack, removal}
}

Document

DOI: 10.4230/OASIcs.SpaceCHI.2025.26

Movement in Low Gravity (MoLo) – LUNA: Biomechanical Modelling to Mitigate Lunar Surface Operation Risks

Authors: David Andrew Green

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract

The Artemis programme seeks to develop and test concepts, hardware and approaches to support long term habitation of the Lunar surface, and future missions to Mars. In preparation for the Artemis missions determination of tasks to be performed, the functional requirements of such tasks and as mission duration extends whether physiological deconditioning becomes functionally significant, compromising the crew member’s ability to perform critical tasks on the surface, and/or upon return to earth [MoLo-LUNA – leveraging the Molo programme (and several other activities) - could become a key supporting activity for LUNA incl. validation of the Puppeteer offloading system itself via creation of a complementary MoLo-LUNA-LAB. Furthermore, the MoLo-LUNA programme could become a key facilitator of simulator suit instrumentation/definition, broader astronaut training activities and mission architecture development – including Artemis mission simulations. By employing a Puppeteer system external to the LUNA chamber hall it will optimise utilisation and cost-effectiveness of LUNA, and as such represents a critical service to future LUNA stakeholders. Furthermore, MoLo-LUNA would generate a unique data set that can be leveraged to predict de-conditioning on the Lunar surface - and thereby optimise functionality, and minimise mission risk – including informing the need for, and prescription of exercise countermeasures on the Lunar Surface and in transit. Thus, MoLo-LUNA offers a unique opportunity to place LUNA, and ESA as a key ongoing provider of evidence to define, optimise and support crew Artemis surface missions.

Cite as

David Andrew Green. Movement in Low Gravity (MoLo) – LUNA: Biomechanical Modelling to Mitigate Lunar Surface Operation Risks. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 26:1-26:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{green:OASIcs.SpaceCHI.2025.26,
  author =	{Green, David Andrew},
  title =	{{Movement in Low Gravity (MoLo) – LUNA: Biomechanical Modelling to Mitigate Lunar Surface Operation Risks}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{26:1--26:11},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.26},
  URN =		{urn:nbn:de:0030-drops-240166},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.26},
  annote =	{Keywords: Locomotion, hypogravity, modelling, Lunar}
}

Document

RANDOM

DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.40

Sublinear Space Graph Algorithms in the Continual Release Model

Authors: Alessandro Epasto, Quanquan C. Liu, Tamalika Mukherjee, and Felix Zhou

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract

The graph continual release model of differential privacy seeks to produce differentially private solutions to graph problems under a stream of edge updates where new private solutions are released after each update. Thus far, previously known edge-differentially private algorithms for most graph problems including densest subgraph and matchings in the continual release setting only output real-value estimates (not vertex subset solutions) and do not use sublinear space. Instead, they rely on computing exact graph statistics on the input [Hendrik Fichtenberger et al., 2021; Shuang Song et al., 2018]. In this paper, we leverage sparsification to address the above shortcomings for edge-insertion streams. Our edge-differentially private algorithms use sublinear space with respect to the number of edges in the graph while some also achieve sublinear space in the number of vertices in the graph. In addition, for the densest subgraph problem, we also output edge-differentially private vertex subset solutions; no previous graph algorithms in the continual release model output such subsets. We make novel use of assorted sparsification techniques from the non-private streaming and static graph algorithms literature to achieve new results in the sublinear space, continual release setting. This includes algorithms for densest subgraph, maximum matching, as well as the first continual release k-core decomposition algorithm. We also develop a novel sparse level data structure for k-core decomposition that may be of independent interest. To complement our insertion-only algorithms, we conclude with polynomial additive error lower bounds for edge-privacy in the fully dynamic setting, where only logarithmic lower bounds were previously known.

Cite as

Alessandro Epasto, Quanquan C. Liu, Tamalika Mukherjee, and Felix Zhou. Sublinear Space Graph Algorithms in the Continual Release Model. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 40:1-40:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{epasto_et_al:LIPIcs.APPROX/RANDOM.2025.40,
  author =	{Epasto, Alessandro and Liu, Quanquan C. and Mukherjee, Tamalika and Zhou, Felix},
  title =	{{Sublinear Space Graph Algorithms in the Continual Release Model}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{40:1--40:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.40},
  URN =		{urn:nbn:de:0030-drops-244064},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.40},
  annote =	{Keywords: Differential Privacy, Continual Release, Densest Subgraph, k-Core Decomposition, Maximum Matching}
}

@InProceedings{epasto_et_al:LIPIcs.APPROX/RANDOM.2025.40,
  author =	{Epasto, Alessandro and Liu, Quanquan C. and Mukherjee, Tamalika and Zhou, Felix},
  title =	{{Sublinear Space Graph Algorithms in the Continual Release Model}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{40:1--40:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.40},
  URN =		{urn:nbn:de:0030-drops-244064},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.40},
  annote =	{Keywords: Differential Privacy, Continual Release, Densest Subgraph, k-Core Decomposition, Maximum Matching}
}

Document

DOI: 10.4230/LIPIcs.MFCS.2025.12

Online Knapsack Problems with Estimates

Authors: Jakub Balabán, Matthias Gehnen, Henri Lotze, Finn Seesemann, and Moritz Stocker

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract

Imagine you are a computer scientist who enjoys attending conferences or workshops within the year. Sadly, your travel budget is limited, so you must select a subset of events you can travel to. When you are aware of all possible events and their costs at the beginning of the year, you can select the subset of the possible events that maximizes your happiness and is within your budget. On the other hand, if you are blind about the options, you will likely have a hard time when trying to decide if you want to register somewhere or not, and will likely regret decisions you made in the future. These scenarios can be modeled by knapsack variants, either by an offline or an online problem. However, both scenarios are somewhat unrealistic: Usually, you will not know the exact costs of each workshop at the beginning of the year. The online version, however, is too pessimistic, as you might already know which options there are and how much they cost roughly. At some point, you have to decide whether to register for some workshop, but then you are aware of the conference fee and the flight and hotel prices. We model this problem within the setting of online knapsack problems with estimates: in the beginning, you receive a list of potential items with their estimated size as well as the accuracy of the estimates. Then, the items are revealed one by one in an online fashion with their actual size, and you need to decide whether to take one or not. In this article, we show a best-possible algorithm for each estimate accuracy δ (i.e., when each actual item size can deviate by ± δ from the announced size) for both the simple knapsack (also known as subset sum problem) and the simple knapsack with removability.

Cite as

Jakub Balabán, Matthias Gehnen, Henri Lotze, Finn Seesemann, and Moritz Stocker. Online Knapsack Problems with Estimates. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{balaban_et_al:LIPIcs.MFCS.2025.12,
  author =	{Balab\'{a}n, Jakub and Gehnen, Matthias and Lotze, Henri and Seesemann, Finn and Stocker, Moritz},
  title =	{{Online Knapsack Problems with Estimates}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.12},
  URN =		{urn:nbn:de:0030-drops-241190},
  doi =		{10.4230/LIPIcs.MFCS.2025.12},
  annote =	{Keywords: Knapsack, Online Knapsack, Removability, Estimate, Prediction}
}

Document

DOI: 10.4230/LIPIcs.DNA.31.4

Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract

Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.

Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}

Document

DOI: 10.4230/LIPIcs.WABI.2025.10

DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract

Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg

Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}

Document

DOI: 10.4230/OASIcs.SLATE.2025.12

Portuguese Far-Right Discourse on Social Media: Insights from Topic Modeling

Authors: Mauro Cardoso, Eugénio Ribeiro, and Fernando Batista

Published in: OASIcs, Volume 135, 14th Symposium on Languages, Applications and Technologies (SLATE 2025)

Abstract

This study analyzes the social media discourse of leading figures from Portugal’s far right party CHEGA, examining 10,323 posts on X (formerly Twitter) published between late 2019 and mid‑2024. Using BERTopic, 59 latent topics clustered into two main discursive dynamics were found: (1) ideological and public, and (2) party, electoral and parliamentary related. Within the first dynamic, we conducted a focused sub-analysis of themes related with identity, immigration and security narratives - topics that display posting peaks around electoral cycles, suggesting the strategic use of emotionally charged, identitarian frames for political mobilization. The model exhibits strong topic coherence and lexical diversity, indicating its robustness in extracting thematic structures from politically polarized microtexts. Nevertheless, our findings are constrained by source, the absence of interaction metrics, and the unmet need to link online discourse to offline events. This study demonstrates how computational topic modeling can reveal strategic communication patterns in far-right political discourse and underscores the need for cross-platform and interaction-level research to assess broader societal impact.

Cite as

Mauro Cardoso, Eugénio Ribeiro, and Fernando Batista. Portuguese Far-Right Discourse on Social Media: Insights from Topic Modeling. In 14th Symposium on Languages, Applications and Technologies (SLATE 2025). Open Access Series in Informatics (OASIcs), Volume 135, pp. 12:1-12:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{cardoso_et_al:OASIcs.SLATE.2025.12,
  author =	{Cardoso, Mauro and Ribeiro, Eug\'{e}nio and Batista, Fernando},
  title =	{{Portuguese Far-Right Discourse on Social Media: Insights from Topic Modeling}},
  booktitle =	{14th Symposium on Languages, Applications and Technologies (SLATE 2025)},
  pages =	{12:1--12:16},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-387-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{135},
  editor =	{Baptista, Jorge and Barateiro, Jos\'{e}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SLATE.2025.12},
  URN =		{urn:nbn:de:0030-drops-236929},
  doi =		{10.4230/OASIcs.SLATE.2025.12},
  annote =	{Keywords: Political Discourse, Topic Modeling, Far-Right, CHEGA (Portugal), Social Media}
}

Document

DOI: 10.4230/LIPIcs.FORC.2025.20

Group Fairness and Multi-Criteria Optimization in School Assignment

Authors: Santhini K. A., Kamesh Munagala, Meghana Nasre, and Govind S. Sankar

Published in: LIPIcs, Volume 329, 6th Symposium on Foundations of Responsible Computing (FORC 2025)

Abstract

We consider the problem of assigning students to schools when students have different utilities for schools and schools have limited capacities. The students belong to demographic groups, and fairness over these groups is captured either by concave objectives, or additional constraints on the utility of the groups. We present approximation algorithms for this assignment problem with group fairness via convex program rounding. These algorithms achieve various trade-offs between capacity violation and running time. We also show that our techniques easily extend to the setting where there are arbitrary constraints on the feasible assignment, capturing multi-criteria optimization. We present simulation results that demonstrate that the rounding methods are practical even on large problem instances, with the empirical capacity violation being much better than the theoretical bounds.

Cite as

Santhini K. A., Kamesh Munagala, Meghana Nasre, and Govind S. Sankar. Group Fairness and Multi-Criteria Optimization in School Assignment. In 6th Symposium on Foundations of Responsible Computing (FORC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 329, pp. 20:1-20:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{k.a._et_al:LIPIcs.FORC.2025.20,
  author =	{K. A., Santhini and Munagala, Kamesh and Nasre, Meghana and S. Sankar, Govind},
  title =	{{Group Fairness and Multi-Criteria Optimization in School Assignment}},
  booktitle =	{6th Symposium on Foundations of Responsible Computing (FORC 2025)},
  pages =	{20:1--20:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-367-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{329},
  editor =	{Bun, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FORC.2025.20},
  URN =		{urn:nbn:de:0030-drops-231471},
  doi =		{10.4230/LIPIcs.FORC.2025.20},
  annote =	{Keywords: School Assignment, Approximation Algorithms, Group Fairness}
}

Document

DOI: 10.4230/LIPIcs.FORC.2025.10

Count on Your Elders: Laplace vs Gaussian Noise

Authors: Joel Daniel Andersson, Rasmus Pagh, Teresa Anna Steiner, and Sahel Torkamani

Published in: LIPIcs, Volume 329, 6th Symposium on Foundations of Responsible Computing (FORC 2025)

Abstract

In recent years, Gaussian noise has become a popular tool in differentially private algorithms, often replacing Laplace noise which dominated the early literature on differential privacy. Gaussian noise is the standard approach to approximate differential privacy, often resulting in much higher utility than traditional (pure) differential privacy mechanisms. In this paper we argue that Laplace noise may in fact be preferable to Gaussian noise in many settings, in particular when we seek to achieve (ε,δ)-differential privacy for small values of δ. We consider two scenarios: First, we consider the problem of counting under continual observation and present a new generalization of the binary tree mechanism that uses a k-ary number system with negative digits to improve the privacy-accuracy trade-off. Our mechanism uses Laplace noise and whenever δ is sufficiently small it improves the mean squared error over the best possible (ε,δ)-differentially private factorization mechanisms based on Gaussian noise. Specifically, using k = 19 we get an asymptotic improvement over the bound given in the work by Henzinger, Upadhyay and Upadhyay (SODA 2023) when δ = O(T^{-0.92}). Second, we show that the noise added by the Gaussian mechanism can always be replaced by Laplace noise of comparable variance for the same (ε, δ)-differential privacy guarantee, and in fact for sufficiently small δ the variance of the Laplace noise becomes strictly better. This challenges the conventional wisdom that Gaussian noise should be used for high-dimensional noise. Finally, we study whether counting under continual observation may be easier in an average-case sense than in a worst-case sense. We show that, under pure differential privacy, the expected worst-case error for a random input must be Ω(log(T)/ε), matching the known lower bound for worst-case inputs.

Cite as

Joel Daniel Andersson, Rasmus Pagh, Teresa Anna Steiner, and Sahel Torkamani. Count on Your Elders: Laplace vs Gaussian Noise. In 6th Symposium on Foundations of Responsible Computing (FORC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 329, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{andersson_et_al:LIPIcs.FORC.2025.10,
  author =	{Andersson, Joel Daniel and Pagh, Rasmus and Steiner, Teresa Anna and Torkamani, Sahel},
  title =	{{Count on Your Elders: Laplace vs Gaussian Noise}},
  booktitle =	{6th Symposium on Foundations of Responsible Computing (FORC 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-367-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{329},
  editor =	{Bun, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FORC.2025.10},
  URN =		{urn:nbn:de:0030-drops-231376},
  doi =		{10.4230/LIPIcs.FORC.2025.10},
  annote =	{Keywords: differential privacy, continual observation, streaming, prefix sums, trees}
}

Document

DOI: 10.4230/LIPIcs.STACS.2025.35

Dimension-Free Parameterized Approximation Schemes for Hybrid Clustering

Authors: Ameet Gadekar and Tanmay Inamdar

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract

Hybrid k-Clustering is a model of clustering that generalizes two of the most widely studied clustering objectives: k-Center and k-Median. In this model, given a set of n points P, the goal is to find k centers such that the sum of the r-distances of each point to its nearest center is minimized. The r-distance between two points p and q is defined as max{dist(p, q)-r, 0} - this represents the distance of p to the boundary of the r-radius ball around q if p is outside the ball, and 0 otherwise. This problem was recently introduced by Fomin et al. [APPROX 2024], who designed a (1+ε, 1+ε)-bicrtieria approximation that runs in time 2^{(kd/ε)^{O(1)}} ⋅ n^{O(1)} for inputs in ℝ^d; such a bicriteria solution uses balls of radius (1+ε)r instead of r, and has a cost at most 1+ε times the cost of an optimal solution using balls of radius r. In this paper we significantly improve upon this result by designing an approximation algorithm with the same bicriteria guarantee, but with running time that is FPT only in k and ε - crucially, removing the exponential dependence on the dimension d. This resolves an open question posed in their paper. Our results extend further in several directions. First, our approximation scheme works in a broader class of metric spaces, including doubling spaces, minor-free, and bounded treewidth metrics. Secondly, our techniques yield a similar bicriteria FPT-approximation schemes for other variants of Hybrid k-Clustering, e.g., when the objective features the sum of z-th power of the r-distances. Finally, we also design a coreset for Hybrid k-Clustering in doubling spaces, answering another open question from the work of Fomin et al.

Cite as

Ameet Gadekar and Tanmay Inamdar. Dimension-Free Parameterized Approximation Schemes for Hybrid Clustering. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 35:1-35:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{gadekar_et_al:LIPIcs.STACS.2025.35,
  author =	{Gadekar, Ameet and Inamdar, Tanmay},
  title =	{{Dimension-Free Parameterized Approximation Schemes for Hybrid Clustering}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{35:1--35:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.35},
  URN =		{urn:nbn:de:0030-drops-228615},
  doi =		{10.4230/LIPIcs.STACS.2025.35},
  annote =	{Keywords: Clustering, Parameterized algorithms, FPT approximation, k-Median, k-Center}
}

Document

Survey

DOI: 10.4230/TGDK.2.1.4

Logics for Conceptual Data Modelling: A Review

Authors: Pablo R. Fillottrani and C. Maria Keet

Published in: TGDK, Volume 2, Issue 1 (2024): Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge, Volume 2, Issue 1

Abstract

Information modelling for databases and object-oriented information systems avails of conceptual data modelling languages such as EER and UML Class Diagrams. Many attempts exist to add logical rigour to them, for various reasons and with disparate strengths. In this paper we aim to provide a structured overview of the many efforts. We focus on aims, approaches to the formalisation, including key dimensions of choice points, popular logics used, and the main relevant reasoning services. We close with current challenges and research directions.

Cite as

Pablo R. Fillottrani and C. Maria Keet. Logics for Conceptual Data Modelling: A Review. In Special Issue on Trends in Graph Data and Knowledge - Part 2. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 1, pp. 4:1-4:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@Article{fillottrani_et_al:TGDK.2.1.4,
  author =	{Fillottrani, Pablo R. and Keet, C. Maria},
  title =	{{Logics for Conceptual Data Modelling: A Review}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:30},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.1.4},
  URN =		{urn:nbn:de:0030-drops-198616},
  doi =		{10.4230/TGDK.2.1.4},
  annote =	{Keywords: Conceptual Data Modelling, EER, UML, Description Logics, OWL}
}

Document

Survey

DOI: 10.4230/TGDK.1.1.11

How Does Knowledge Evolve in Open Knowledge Graphs?

Authors: Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract

Openly available, collaboratively edited Knowledge Graphs (KGs) are key platforms for the collective management of evolving knowledge. The present work aims t o provide an analysis of the obstacles related to investigating and processing specifically this central aspect of evolution in KGs. To this end, we discuss (i) the dimensions of evolution in KGs, (ii) the observability of evolution in existing, open, collaboratively constructed Knowledge Graphs over time, and (iii) possible metrics to analyse this evolution. We provide an overview of relevant state-of-the-art research, ranging from metrics developed for Knowledge Graphs specifically to potential methods from related fields such as network science. Additionally, we discuss technical approaches - and their current limitations - related to storing, analysing and processing large and evolving KGs in terms of handling typical KG downstream tasks.

Cite as

Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs. How Does Knowledge Evolve in Open Knowledge Graphs?. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 11:1-11:59, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{polleres_et_al:TGDK.1.1.11,
  author =	{Polleres, Axel and Pernisch, Romana and Bonifati, Angela and Dell'Aglio, Daniele and Dobriy, Daniil and Dumbrava, Stefania and Etcheverry, Lorena and Ferranti, Nicolas and Hose, Katja and Jim\'{e}nez-Ruiz, Ernesto and Lissandrini, Matteo and Scherp, Ansgar and Tommasini, Riccardo and Wachs, Johannes},
  title =	{{How Does Knowledge Evolve in Open Knowledge Graphs?}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{11:1--11:59},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.11},
  URN =		{urn:nbn:de:0030-drops-194855},
  doi =		{10.4230/TGDK.1.1.11},
  annote =	{Keywords: KG evolution, temporal KG, versioned KG, dynamic KG}
}

Document

Vision

DOI: 10.4230/TGDK.1.1.8

Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges

Authors: Claudia d'Amato, Louis Mahon, Pierre Monnin, and Giorgos Stamou

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract

The graph model is nowadays largely adopted to model a wide range of knowledge and data, spanning from social networks to knowledge graphs (KGs), representing a successful paradigm of how symbolic and transparent AI can scale on the World Wide Web. However, due to their unprecedented volume, they are generally tackled by Machine Learning (ML) and mostly numeric based methods such as graph embedding models (KGE) and deep neural networks (DNNs). The latter methods have been proved lately very efficient, leading the current AI spring. In this vision paper, we introduce some of the main existing methods for combining KGs and ML, divided into two categories: those using ML to improve KGs, and those using KGs to improve results on ML tasks. From this introduction, we highlight research gaps and perspectives that we deem promising and currently under-explored for the involved research communities, spanning from KG support for LLM prompting, integration of KG semantics in ML models to symbol-based methods, interpretability of ML models, and the need for improved benchmark datasets. In our opinion, such perspectives are stepping stones in an ultimate view of KGs as central assets for neuro-symbolic and explainable AI.

Cite as

Claudia d'Amato, Louis Mahon, Pierre Monnin, and Giorgos Stamou. Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 8:1-8:35, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{damato_et_al:TGDK.1.1.8,
  author =	{d'Amato, Claudia and Mahon, Louis and Monnin, Pierre and Stamou, Giorgos},
  title =	{{Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{8:1--8:35},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.8},
  URN =		{urn:nbn:de:0030-drops-194824},
  doi =		{10.4230/TGDK.1.1.8},
  annote =	{Keywords: Graph-based Learning, Knowledge Graph Embeddings, Large Language Models, Explainable AI, Knowledge Graph Completion \& Curation}
}

22 Search Results for "Ruiz, Daniel"

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Abstract

Cite as

Thanks for your feedback!

Could not send message