Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Luís Cunha, Ignasi Sau, and Uéverton Souza. On the Complexity of the Median and Closest Permutation Problems. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 2:1-2:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{cunha_et_al:LIPIcs.WABI.2024.2, author = {Cunha, Lu{\'\i}s and Sau, Ignasi and Souza, U\'{e}verton}, title = {{On the Complexity of the Median and Closest Permutation Problems}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {2:1--2:23}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.2}, URN = {urn:nbn:de:0030-drops-206468}, doi = {10.4230/LIPIcs.WABI.2024.2}, annote = {Keywords: Median problem, Closest problem, Genome rearrangements, Parameterized complexity} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Yao-ban Chan. An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 3:1-3:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{chan:LIPIcs.WABI.2024.3, author = {Chan, Yao-ban}, title = {{An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {3:1--3:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.3}, URN = {urn:nbn:de:0030-drops-206472}, doi = {10.4230/LIPIcs.WABI.2024.3}, annote = {Keywords: Reconciliation, recombination, paralog exchange, phylogenetic network, gene duplication, gene loss} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Tsuyoshi Urata, Manato Yokoyama, and Momoko Hayamizu. Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 9:1-9:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{urata_et_al:LIPIcs.WABI.2024.9, author = {Urata, Tsuyoshi and Yokoyama, Manato and Hayamizu, Momoko}, title = {{Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {9:1--9:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.9}, URN = {urn:nbn:de:0030-drops-206531}, doi = {10.4230/LIPIcs.WABI.2024.9}, annote = {Keywords: Phylogenetic Networks, Tree-Child Networks, Graph Orientation Algorithms} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Bertrand Marchand, Nadia Tahiri, Olivier Tremblay-Savard, and Manuel Lafond. Finding Maximum Common Contractions Between Phylogenetic Networks. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 16:1-16:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{marchand_et_al:LIPIcs.WABI.2024.16, author = {Marchand, Bertrand and Tahiri, Nadia and Tremblay-Savard, Olivier and Lafond, Manuel}, title = {{Finding Maximum Common Contractions Between Phylogenetic Networks}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {16:1--16:24}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.16}, URN = {urn:nbn:de:0030-drops-206606}, doi = {10.4230/LIPIcs.WABI.2024.16}, annote = {Keywords: Phylogenetic networks, contractions, algorithms, weakly galled trees} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, and Manuel Lafond. The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 20:1-20:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{lopezsanchez_et_al:LIPIcs.WABI.2024.20, author = {L\'{o}pez S\'{a}nchez, Alitzel and Ram{\'\i}rez-Rafael, Jos\'{e} Antonio and Flores-Lamas, Alejandro and Hern\'{a}ndez-Rosales, Maribel and Lafond, Manuel}, title = {{The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {20:1--20:21}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.20}, URN = {urn:nbn:de:0030-drops-206645}, doi = {10.4230/LIPIcs.WABI.2024.20}, annote = {Keywords: Reconciliation, gene trees, species trees, evolutionary scenarios} }
Published in: LIPIcs, Volume 302, 35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024)
Yu-Sheng Chang, Michael Fuchs, and Guan-Ru Yu. Galled Tree-Child Networks. In 35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 302, pp. 8:1-8:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{chang_et_al:LIPIcs.AofA.2024.8, author = {Chang, Yu-Sheng and Fuchs, Michael and Yu, Guan-Ru}, title = {{Galled Tree-Child Networks}}, booktitle = {35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024)}, pages = {8:1--8:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-329-4}, ISSN = {1868-8969}, year = {2024}, volume = {302}, editor = {Mailler, C\'{e}cile and Wild, Sebastian}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AofA.2024.8}, URN = {urn:nbn:de:0030-drops-204439}, doi = {10.4230/LIPIcs.AofA.2024.8}, annote = {Keywords: Phylogenetic Network, galled Network, tree-child Network, asymptotic Enumeration, Limit Law, Lagrange Inversion} }
Published in: LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020)
Katharina Jahn, Niko Beerenwinkel, and Louxin Zhang. The Bourque Distances for Mutation Trees of Cancers. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 172, pp. 14:1-14:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)
@InProceedings{jahn_et_al:LIPIcs.WABI.2020.14, author = {Jahn, Katharina and Beerenwinkel, Niko and Zhang, Louxin}, title = {{The Bourque Distances for Mutation Trees of Cancers}}, booktitle = {20th International Workshop on Algorithms in Bioinformatics (WABI 2020)}, pages = {14:1--14:22}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-161-0}, ISSN = {1868-8969}, year = {2020}, volume = {172}, editor = {Kingsford, Carl and Pisanti, Nadia}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.14}, URN = {urn:nbn:de:0030-drops-128039}, doi = {10.4230/LIPIcs.WABI.2020.14}, annote = {Keywords: mutation trees, clonal trees, tree distance, phylogenetic trees, tree metric, Robinson - Foulds distance, Bourque distance} }
Feedback for Dagstuhl Publishing