7 Search Results for "Zhou, Zhiyong"

Document
Research
DOI: 10.4230/TGDK.4.1.1
On the Computational Cost of Knowledge Graph Embeddings

Authors: Victor Charpenay, Mansour Zoubeirou A Mayaki, and Antoine Zimmermann

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1

Abstract
Over a decade, numerous Knowledge Graph Embedding (KGE) models have been designed and evaluated on reference datasets, always with increasing performance. In this paper, we re-evaluate these models with respect to their computational efficiency during training, by estimating the computational cost of the procedure expressed in floating-point operations. We design a cost model based on analytical expressions and apply it on a collection of 20 KGE models, representative of the state-of-the-art. We show that dimensionality or parameter efficiency, used in the literature to compare models with each other, are not suitable to evaluate the true cost of models. Through fixed-budget experiments, a novel approach to evaluate KGE models based on cost estimates, we re-assess the relative performance of model families compared to the state-of-the-art. Bilinear models such as ComplEx underperform with a low computational budget while hyperbolic linear models appear to offer no particular benefit compared to simpler Euclidian models, especially the MuRE model. Neural models, such as ConvE or CompGCN, achieve reasonable performance in the literature but their high computational cost appears unnecessary when compared with other models. The trade-off between efficiency and expressivity of both linear and neural models is to be further explored.
Cite as

Victor Charpenay, Mansour Zoubeirou A Mayaki, and Antoine Zimmermann. On the Computational Cost of Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 1:1-1:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@Article{charpenay_et_al:TGDK.4.1.1,
  author =	{Charpenay, Victor and Zoubeirou A Mayaki, Mansour and Zimmermann, Antoine},
  title =	{{On the Computational Cost of Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:30},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.1},
  URN =		{urn:nbn:de:0030-drops-256863},
  doi =		{10.4230/TGDK.4.1.1},
  annote =	{Keywords: Knowledge Graph Embedding, Parameter Efficiency, Computational Budget, Green AI}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.1
Cache Timing Leakages in Zero-Knowledge Protocols

Authors: Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
The area of modern zero-knowledge proof systems has seen a significant rise in popularity over the last couple of years, with new techniques and optimized constructions emerging on a regular basis. As the field matures, the aspect of implementation attacks becomes more relevant, however side-channel attacks on zero-knowledge proof systems have seen surprisingly little treatment so far. In this paper, we give an overview of potential attack vectors and show that some of the underlying finite field libraries, and implementations of heavily used components like hash functions using them, are vulnerable w.r.t. cache attacks on CPUs. On the positive side, we demonstrate that the computational overhead to protect against these attacks is relatively small.
Cite as

Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger. Cache Timing Leakages in Zero-Knowledge Protocols. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 1:1-1:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mukherjee_et_al:LIPIcs.AFT.2025.1,
  author =	{Mukherjee, Shibam and Rechberger, Christian and Schofnegger, Markus},
  title =	{{Cache Timing Leakages in Zero-Knowledge Protocols}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{1:1--1:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.1},
  URN =		{urn:nbn:de:0030-drops-247201},
  doi =		{10.4230/LIPIcs.AFT.2025.1},
  annote =	{Keywords: zero-knowledge, protocol, cache timing, side-channel, leakage}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.12
Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing

Authors: Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Millions of biological sample records collected in the last few centuries archived in natural history collections are un-georeferenced. Georeferencing complex locality descriptions associated with these collection samples is a highly labour-intensive task collection agencies struggle with. None of the existing automated methods exploit maps that are an essential tool for georeferencing complex relations. We present preliminary experiments and results of a novel method that exploits multi-modal capabilities of recent Large Multi-Modal Models (LMM). This method enables the model to visually contextualize spatial relations it reads in the locality description. We use a grid-based approach to adapt these auto-regressive models for this task in a zero-shot setting. Our experiments conducted on a small manually annotated dataset show impressive results for our approach (∼1 km Average distance error) compared to uni-modal georeferencing with Large Language Models and existing georeferencing tools. The paper also discusses the findings of the experiments in light of an LMM’s ability to comprehend fine-grained maps. Motivated by these results, a practical framework is proposed to integrate this method into a georeferencing workflow.
Cite as

Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones. Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{wijegunarathna_et_al:LIPIcs.GIScience.2025.12,
  author =	{Wijegunarathna, Kalana and Stock, Kristin and Jones, Christopher B.},
  title =	{{Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.12},
  URN =		{urn:nbn:de:0030-drops-238412},
  doi =		{10.4230/LIPIcs.GIScience.2025.12},
  annote =	{Keywords: Large Multi-Modal Models, Large Language Models, LLM, Georeferencing, Natural History collections}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.12
Automatic Goal Clone Detection in Rocq

Authors: Ali Ghanbari

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Proof engineering in Rocq is a labor-intensive process, and as proof developments grow in size, redundancy and maintainability become challenges. One such redundancy is goal cloning, i.e., proving α-equivalent goals multiple times, leading to wasted effort and bloated proof scripts. In this paper, we introduce clone-finder, a novel technique for detecting goal clones in Rocq proofs. By leveraging the formal notion of α-equivalence for Gallina terms, clone-finder systematically identifies duplicated proof goals across large Rocq codebases. We evaluate clone-finder on 40 real-world Rocq projects from the CoqGym dataset. Our results reveal that each project contains an average of 27.73 instances of goal clone. We observed that the clones can be categorized as either exact goal duplication, generalization, or α-equivalent goals with different proofs, each signifying varying levels duplicate effort. Our findings highlight significant untapped potential for proof reuse in Rocq-based formal verification projects, paving the way for future improvements in automated proof engineering.
Cite as

Ali Ghanbari. Automatic Goal Clone Detection in Rocq. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghanbari:LIPIcs.ECOOP.2025.12,
  author =	{Ghanbari, Ali},
  title =	{{Automatic Goal Clone Detection in Rocq}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.12},
  URN =		{urn:nbn:de:0030-drops-233055},
  doi =		{10.4230/LIPIcs.ECOOP.2025.12},
  annote =	{Keywords: Clone Detection, Goal, Proof, Rocq, Gallina}
}
Document
Survey
DOI: 10.4230/TGDK.1.1.7
Rule Learning over Knowledge Graphs: A Review

Authors: Hong Wu, Zhe Wang, Kewen Wang, Pouya Ghiasnezhad Omran, and Jiangmeng Li

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Compared to black-box neural networks, logic rules express explicit knowledge, can provide human-understandable explanations for reasoning processes, and have found their wide application in knowledge graphs and other downstream tasks. As extracting rules manually from large knowledge graphs is labour-intensive and often infeasible, automated rule learning has recently attracted significant interest, and a number of approaches to rule learning for knowledge graphs have been proposed. This survey aims to provide a review of approaches and a classification of state-of-the-art systems for learning first-order logic rules over knowledge graphs. A comparative analysis of various approaches to rule learning is conducted based on rule language biases, underlying methods, and evaluation metrics. The approaches we consider include inductive logic programming (ILP)-based, statistical path generalisation, and neuro-symbolic methods. Moreover, we highlight important and promising application scenarios of rule learning, such as rule-based knowledge graph completion, fact checking, and applications in other research areas.
Cite as

Hong Wu, Zhe Wang, Kewen Wang, Pouya Ghiasnezhad Omran, and Jiangmeng Li. Rule Learning over Knowledge Graphs: A Review. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 7:1-7:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{wu_et_al:TGDK.1.1.7,
  author =	{Wu, Hong and Wang, Zhe and Wang, Kewen and Omran, Pouya Ghiasnezhad and Li, Jiangmeng},
  title =	{{Rule Learning over Knowledge Graphs: A Review}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{7:1--7:23},
  ISSN =	{2942-7517},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.7},
  URN =		{urn:nbn:de:0030-drops-194813},
  doi =		{10.4230/TGDK.1.1.7},
  annote =	{Keywords: Rule learning, Knowledge graphs, Link prediction}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
Short Paper
DOI: 10.4230/LIPIcs.GIScience.2023.30
Progress in Constructing an Open Map Generalization Data Set for Deep Learning (Short Paper)

Authors: Cheng Fu, Zhiyong Zhou, Jan Winkler, Nicolas Beglinger, and Robert Weibel

Published in: LIPIcs, Volume 277, 12th International Conference on Geographic Information Science (GIScience 2023)

Abstract
Recent pioneering works have shown the potential of a new deep-learning-backed paradigm for automated map generalization. However, this approach also puts a high demand on the availability of balanced and rich training sets. We present our design and progress of constructing an open training data set that can support relevant studies, collaborating with the Swiss Federal Office of Topography. The proposed data set will contain transitions of building and road generalization in Swiss maps at 1:25k, 1:50k, and 1:100k. By analyzing the generalization operators involved in these transitions, we also propose several challenges that can benefit from our proposed data set. Besides, we hope to also stimulate the production of further open data sets for deep-learning-backed map generalization.
Cite as

Cheng Fu, Zhiyong Zhou, Jan Winkler, Nicolas Beglinger, and Robert Weibel. Progress in Constructing an Open Map Generalization Data Set for Deep Learning (Short Paper). In 12th International Conference on Geographic Information Science (GIScience 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 277, pp. 30:1-30:6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{fu_et_al:LIPIcs.GIScience.2023.30,
  author =	{Fu, Cheng and Zhou, Zhiyong and Winkler, Jan and Beglinger, Nicolas and Weibel, Robert},
  title =	{{Progress in Constructing an Open Map Generalization Data Set for Deep Learning}},
  booktitle =	{12th International Conference on Geographic Information Science (GIScience 2023)},
  pages =	{30:1--30:6},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-288-4},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{277},
  editor =	{Beecham, Roger and Long, Jed A. and Smith, Dianna and Zhao, Qunshan and Wise, Sarah},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2023.30},
  URN =		{urn:nbn:de:0030-drops-189257},
  doi =		{10.4230/LIPIcs.GIScience.2023.30},
  annote =	{Keywords: open data, deep learning, map generalization}
}
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