12 Search Results for "Liao, Chao"

Document
DOI: 10.4230/OASIcs.NG-RES.2026.3
Integrated Memory Grouping and Power-Aware MBIST Scheduling for MPSoCs

Authors: Koki Asahina and Yasuhiko Nakashima

Published in: OASIcs, Volume 140, 7th Workshop on Next Generation Real-Time Embedded Systems (NG-RES 2026)

Abstract
Memory Built-In Self-Test (MBIST) is a widely adopted technique for testing memory. In modern large-scale SoCs, hundreds to thousands of embedded memories are integrated, and to test them efficiently, methods that group memories and test them in parallel within each group are employed. However, many existing approaches either do not account for test scheduling or rely on evolutionary methods, such as genetic algorithms (GAs), for grouping, which incur high computational costs. In this work, we propose a framework that covers the flow from memory grouping to test scheduling. Taking the specifications and layout information of multiple SRAMs into account, the framework comprises a flexible, fast memory grouping method and a scheduling method that minimizes the total test time under a power-constrained constraint. In the proposed approach, DBSCAN and rectangular partitioning are used to perform fast grouping while suppressing long routing connections, and an LPT-based greedy heuristic is employed to shorten the total test time under constraints on the power limit and the number of simultaneously active BIST controllers. Experimental evaluation using SRAM placement data based on the ASAP7 PDK shows that, compared with existing K-means, Greedy, and GA-based methods, the proposed method reduces the number of groups by up to 48% while achieving approximately 87× speedup in clustering runtime. Furthermore, compared with a commercial Industrial Solution, it reduces the test time by 53%. These results demonstrate that the proposed method provides high scalability and practical effectiveness for MBIST design, even in large-scale MPSoCs with a large number and variety of embedded memories.
Cite as

Koki Asahina and Yasuhiko Nakashima. Integrated Memory Grouping and Power-Aware MBIST Scheduling for MPSoCs. In 7th Workshop on Next Generation Real-Time Embedded Systems (NG-RES 2026). Open Access Series in Informatics (OASIcs), Volume 140, pp. 3:1-3:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

Copy BibTex To Clipboard

@InProceedings{asahina_et_al:OASIcs.NG-RES.2026.3,
  author =	{Asahina, Koki and Nakashima, Yasuhiko},
  title =	{{Integrated Memory Grouping and Power-Aware MBIST Scheduling for MPSoCs}},
  booktitle =	{7th Workshop on Next Generation Real-Time Embedded Systems (NG-RES 2026)},
  pages =	{3:1--3:13},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-415-4},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{140},
  editor =	{Ali, Hazem Ismail and Kurunathan, Harrison},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.NG-RES.2026.3},
  URN =		{urn:nbn:de:0030-drops-254214},
  doi =		{10.4230/OASIcs.NG-RES.2026.3},
  annote =	{Keywords: MBIST, DfT, Memory Grouping, Power-Aware Scheduling}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.68
Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree

Authors: Xiaoyu Chen and Weiming Feng

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
We develop a new framework to prove the mixing or relaxation time for the Glauber dynamics on spin systems with unbounded degree. It works for general spin systems including both 2-spin and multi-spin systems. As applications for this approach: - We prove the optimal O(n) relaxation time for the Glauber dynamics of random q-list-coloring on an n-vertices triangle-tree graph with maximum degree Δ such that q/Δ > α^⋆, where α^⋆ ≈ 1.763 is the unique positive solution of the equation α = exp(1/α). This improves the n^{1+o(1)} relaxation time for Glauber dynamics obtained by the previous work of Jain, Pham, and Vuong (2022). Besides, our framework can also give a near-linear time sampling algorithm under the same condition. - We prove the optimal O(n) relaxation time and near-optimal Õ(n) mixing time for the Glauber dynamics on hardcore models with parameter λ in balanced bipartite graphs such that λ < λ_c(Δ_L) for the max degree Δ_L in left part and the max degree Δ_R of right part satisfies Δ_R = O(Δ_L). This improves the previous result by Chen, Liu, and Yin (2023). At the heart of our proof is the notion of coupling independence which allows us to consider multiple vertices as a huge single vertex with exponentially large domain and do a "coarse-grained" local-to-global argument on spin systems. The technique works for general (multi) spin systems and helps us obtain some new comparison results for Glauber dynamics.
Cite as

Xiaoyu Chen and Weiming Feng. Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 68:1-68:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{chen_et_al:LIPIcs.APPROX/RANDOM.2025.68,
  author =	{Chen, Xiaoyu and Feng, Weiming},
  title =	{{Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{68:1--68:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  URN =		{urn:nbn:de:0030-drops-244345},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  annote =	{Keywords: coupling independence, Glauber dynamics, mixing times, relaxation times, spin systems}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.60
Sink-Free Orientations: A Local Sampler with Applications

Authors: Konrad Anand, Graham Freifeld, Heng Guo, Chunyang Wang, and Jiaheng Wang

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
For sink-free orientations in graphs of minimum degree at least 3, we show that there is a deterministic approximate counting algorithm that runs in time O((n^33/ε^32)log(n/ε)), a near-linear time sampling algorithm, and a randomised approximate counting algorithm that runs in time O((n/ε)²log(n/ε)), where n denotes the number of vertices of the input graph and 0 < ε < 1 is the desired accuracy. All three algorithms are based on a local implementation of the sink popping method (Cohn, Pemantle, and Propp, 2002) under the partial rejection sampling framework (Guo, Jerrum, and Liu, 2019).
Cite as

Konrad Anand, Graham Freifeld, Heng Guo, Chunyang Wang, and Jiaheng Wang. Sink-Free Orientations: A Local Sampler with Applications. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 60:1-60:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{anand_et_al:LIPIcs.APPROX/RANDOM.2025.60,
  author =	{Anand, Konrad and Freifeld, Graham and Guo, Heng and Wang, Chunyang and Wang, Jiaheng},
  title =	{{Sink-Free Orientations: A Local Sampler with Applications}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{60:1--60:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.60},
  URN =		{urn:nbn:de:0030-drops-244267},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.60},
  annote =	{Keywords: Sink-free orientations, local sampling, deterministic counting}
}
Document
Extended Abstract
DOI: 10.4230/LIPIcs.WABI.2025.23
Partitioned Multi-MUM Finding for Scalable Pangenomics (Extended Abstract)

Authors: Vikram S. Shivakumar and Ben Langmead

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Pangenome collections continue to grow and proliferate to hundreds of high-quality genomes, for example, the expanded v2 version of the Human Pangenome Reference Consortium (HPRC) dataset spanning 474 human haplotypes [Liao et al., 2023]. As the size and complexity of these collections grow, it is increasingly important that our methods for studying and indexing pangenomes be scalable and updateable. Maximal Unique Matches (multi-MUMs), exact substring matches present exactly once in all sequences in a pangenome collection, represent conserved anchor sequences that can comprise a common coordinate system. We previously proposed a framework and tool called Mumemto for rapidly identifying multi-MUMs during construction of a compressed pangenome index [Shivakumar and Langmead, 2025]. Using prefix-free parsing (PFP) [Boucher et al., 2019], a compressed-space method for computing full-text indexes, Mumemto outperforms existing methods for identifying multi-MUMs. However, one drawback remains updateability and scalability. Mumemto can become memory-intensive for large pangenomes (> 300 human genomes), and as newly assembled genomes are added to a pangenome collection, Mumemto requires re-running on the entire updated collection. To address this, we developed a partition-merging approach to compute multi-MUMs with Mumemto. We introduce two strategies for merging of multi-MUMs computed across different collections (see Figure 1), enabling parallelization across partitions and simple computation of multi-MUMs for incrementally-updated collections. The first strategy requires a common sequence in each partition (which we call "anchor-based merging"), which serves as a coordinate system to identify multi-MUM overlaps between partitions. By tracking the next longest match for all multi-MUMs and unique matches (UMs) in an auxiliary data structure, intersections between matches can be filtered out if no longer unique in the union collection. The second strategy identifies overlaps directly from the multi-MUM substrings (called "string-based merging"). The overlaps are identified by running Mumemto over the extracted multi-MUM sequences and are similarly filtered out if they are too short to considered unique. Lastly, we propose an extension to anchor-based merging to enable the computation of partial multi-MUMs, present in only a subset of sequences in the union set. The partition-merging framework introduces a tradeoff space in Mumemto between running time and memory, depending on partition size and the number of threads. Running parallel, per-partition Mumemto processes and merging the results reduces the running time but increases the peak memory footprint, while running a single Mumemto thread over each partition serially yields longer running time but a smaller memory footprint. To evaluate this tradeoff, we computed multi-MUMs across 474 haplotypes of chr19 from the HPRC v2 dataset [Liao et al., 2023] and 69 assemblies of A. thaliana [Lian et al., 2024] (Table 1). The string-based method also enables merging multi-MUMs between disjoint collections, for example subclades in a phylogenetic tree. By merging multi-MUMs along the shape of the tree, we can compute matches at internal nodes of the tree along with the root, revealing clade-specific conservation and structural variation. Multi-MUM merging also enables interspecific match computation, which was previously infeasible with Mumemto due to high memory usage for highly-diverse input sequence collections. We use partition-merging to compute multi-MUMs across 29 primate assemblies, and found a correspondence to ultraconserved elements previously found across mammalian genomes [Cummins et al., 2024]. We show that a partitioned Mumemto enables scalability to growing pangenome collections and expands the applicability of Mumemto to larger, more diverse datasets. As a result, Mumemto is the only method capable of computing exact matches across the entire HPRC v2 dataset (474 haplotypes [Liao et al., 2023]), and can easily incorporate future releases of assemblies without recomputation. This increases the scope for exploration of genomic conservation and variation and highlights the potential for Mumemto as a core method for future pangenomics and comparative genomics research. The partitioned Mumemto framework is implemented in v1.3.0 and is available open-source at https://github.com/vikshiv/mumemto.
Cite as

Vikram S. Shivakumar and Ben Langmead. Partitioned Multi-MUM Finding for Scalable Pangenomics (Extended Abstract). In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 23:1-23:4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{shivakumar_et_al:LIPIcs.WABI.2025.23,
  author =	{Shivakumar, Vikram S. and Langmead, Ben},
  title =	{{Partitioned Multi-MUM Finding for Scalable Pangenomics}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{23:1--23:4},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.23},
  URN =		{urn:nbn:de:0030-drops-239490},
  doi =		{10.4230/LIPIcs.WABI.2025.23},
  annote =	{Keywords: Pangenomics, Comparative genomics, Compressed indexing}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.WABI.2025.2
We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk)

Authors: Ben Langmead

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Since the arrival of second-generation sequencing, we have needed to build indexes over reference sequences - e.g. genomes and transcriptomes - in order to solve read alignment and classification problems efficiently [Langmead et al., 2009; Li and Durbin, 2009; Li et al., 2009]. The rule has been: what we can index determines what we can do. When indexing strings, we can use methods like suffix arrays [Manber and Myers, 1993], the Burrows-Wheeler Transform (BWT) [Burrows and Wheeler, 1994] / FM Index [Ferragina and Manzini, 2000], or k-mer indexes [Marchet et al., 2021]. What if we want to index objects more complex than strings? A pangenome, for example, is a large collection of similar strings, e.g. the hundreds of assemblies that make up the Human Pangenome Reference [Liao et al., 2023] or all the bacteria in the Refseq database [Goldfarb et al., 2025]. We may wish to combine these strings into a multiple sequence alignment (MSA) or a graph first. Can we index those efficiently? In many useful cases the answer is "yes," but in others the answer is "no." The story of how we learned exactly when the answer is "yes" versus "no" unfolded through a sequence of insights. Here we review this story, eventually arriving at the definition of Wheeler graphs as discovered and formalized by Gagie, Manzini and Sirén [Gagie et al., 2017]. We will focus on indexes based on the BWT, since these (a) are lossless full-text indexes, (b) are widely used in practice [Langmead et al., 2009; Li and Durbin, 2009], and (c) form the theoretical throughline for all the indexing strategies on the path to Wheeler graphs. We will trace the BWT-based indexing story from the early days of the FM Index, though its step-by-step gobbling up of trees (XBW-transform [Ferragina et al., 2005]) and de Bruijn Graphs (BOSS representation [Bowe et al., 2012]), and to the eventual formalization of Wheeler graphs [Gagie et al., 2017]. Along the way, we will define and update our notions of what it means to track a consecutive range of elements in the structure, and what it means for an index to be efficient. We will also connect these notions to automata [Sipser, 1996], noting how the indexability of Wheeler graphs (also called Wheeler automata) is connected to the mechanics of how to efficiently represent and simulate a finite automaton [Alanko et al., 2021]. With this context, we can imagine improved indexes for the future of genomics and pangenomics. De Bruijn are extremely practical and are the most widely used among the non-string data structures that are also Wheeler graphs. But we might prefer other options. For example, de Bruijn graphs have the undesirable property that they usually encode not only the true longer-than-k substrings of the original text, but also "false" substrings that span repeats. Related to this, paths through the de Bruijn graph can "glue" substrings together that are horizontally distant in the MSA. Could other Wheeler graphs be practical alternatives to de Bruijn graphs? For instance, the original GCSA study by Sirén, Välimäki and Mäkinen proposed a way to convert a multiple alignment into an automaton that either is a Wheeler graph or can be made into one [Sirén et al., 2014]. This warrants further exploration, possibly with the help of improved tools for solving the NP-complete problem of recognizing whether a graph is a Wheeler graph [Chao et al., 2023]. The notion of BWT tunnels [Baier, 2018] gives another route: we can begin with a concatenated pangenome strings and compress it by identifying and collapsing BWT tunnels. This yields a Wheeler graph that is compressed like the de Bruijn graph, but without departing from the exact contents or coordinate systems of the original genomes. The future might need us to explore all these Wheeler-graph indexes, along with the also highly practical and always-improving world of indexes buiover collections of strings [Gagie et al., 2018].
Cite as

Ben Langmead. We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk). In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 2:1-2:2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{langmead:LIPIcs.WABI.2025.2,
  author =	{Langmead, Ben},
  title =	{{We Are What We Index; a Primer for the Wheeler Graph Era}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{2:1--2:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.2},
  URN =		{urn:nbn:de:0030-drops-239288},
  doi =		{10.4230/LIPIcs.WABI.2025.2},
  annote =	{Keywords: Indexing, Burrows-Wheeler Transform}
}
Document
DOI: 10.4230/LIPIcs.CP.2025.3
Solving the Agile Earth Observation Satellite Scheduling Problem with CP and Local Search

Authors: Valentin Antuori, Damien T. Wojtowicz, and Emmanuel Hebrard

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
The increasing hunger for remote sensing data fuels a boom in satellite imagery, leading to larger agile Earth observation satellite (AEOS) constellations. Therefore, instances of the AEOS scheduling problem (AEOSSP) has become harder to solve. As most existing approaches to solve AEOSSP are designed for a single spacecraft or smaller constellations in mind, they are not tailored to the need of our industrial partner that is about to launch a constellation of 20 AEOSs. Hence, we designed a local search solver able to schedule observations and downloads at such a scale. It relies on solving a series of sub-problems as travelling salesman problem with time windows (TSPTW), first greedily, then using a CP-SAT exact solver in order to find a solution when the greedy insertion fails. Lastly, it schedules downloads and enforces memory constraints with greedy algorithms. Experiments were carried out on instances from the literature as well as generated instances from a simulator we designed. Our experiments show that using CP to solve the sub-problem significantly improve the solutions, and overall our method is slightly better than state-of-the-art approaches.
Cite as

Valentin Antuori, Damien T. Wojtowicz, and Emmanuel Hebrard. Solving the Agile Earth Observation Satellite Scheduling Problem with CP and Local Search. In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 3:1-3:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{antuori_et_al:LIPIcs.CP.2025.3,
  author =	{Antuori, Valentin and Wojtowicz, Damien T. and Hebrard, Emmanuel},
  title =	{{Solving the Agile Earth Observation Satellite Scheduling Problem with CP and Local Search}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{3:1--3:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.3},
  URN =		{urn:nbn:de:0030-drops-238647},
  doi =		{10.4230/LIPIcs.CP.2025.3},
  annote =	{Keywords: Local Search, Greedy Algorithms, Aerospace Applications}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.83
Low-Temperature Sampling on Sparse Random Graphs

Authors: Andreas Galanis, Leslie Ann Goldberg, and Paulina Smolarova

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We consider sampling in the so-called low-temperature regime, which is typically characterised by non-local behaviour and strong global correlations. Canonical examples include sampling independent sets on bipartite graphs and sampling from the ferromagnetic q-state Potts model. Low-temperature sampling is computationally intractable for general graphs, but recent advances based on the polymer method have made significant progress for graph families that exhibit certain expansion properties that reinforce the correlations, including for example expanders, lattices and dense graphs. One of the most natural graph classes that has so far escaped this algorithmic framework is the class of sparse Erdős-Rényi random graphs whose expansion only manifests for sufficiently large subsets of vertices; small sets of vertices on the other hand have vanishing expansion which makes them behave independently from the bulk of the graph and therefore weakens the correlations. At a more technical level, the expansion of small sets is crucial for establishing the Kotecky-Priess condition which underpins the applicability of the framework. Our main contribution is to develop the polymer method in the low-temperature regime for sparse random graphs. As our running example, we use the Potts and random-cluster models on G(n,d/n) for d = Θ(1), where we show a polynomial-time sampling algorithm for all sufficiently large q and d, at all temperatures. Our approach applies more generally for models that are monotone. Key to our result is a simple polymer definition that blends easily with the connectivity properties of the graph and allows us to show that polymers have size at most O(log n).
Cite as

Andreas Galanis, Leslie Ann Goldberg, and Paulina Smolarova. Low-Temperature Sampling on Sparse Random Graphs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 83:1-83:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

Copy BibTex To Clipboard

@InProceedings{galanis_et_al:LIPIcs.ICALP.2025.83,
  author =	{Galanis, Andreas and Goldberg, Leslie Ann and Smolarova, Paulina},
  title =	{{Low-Temperature Sampling on Sparse Random Graphs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{83:1--83:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.83},
  URN =		{urn:nbn:de:0030-drops-234606},
  doi =		{10.4230/LIPIcs.ICALP.2025.83},
  annote =	{Keywords: approximate counting, Glauber dynamics, random cluster model, approximate sampling, Erd\H{o}s-R\'{e}nyi Graphs}
}
Document
Position
DOI: 10.4230/TGDK.1.1.2
Large Language Models and Knowledge Graphs: Opportunities and Challenges

Authors: Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Large Language Models (LLMs) have taken Knowledge Representation - and the world - by storm. This inflection point marks a shift from explicit knowledge representation to a renewed focus on the hybrid representation of both explicit knowledge and parametric knowledge. In this position paper, we will discuss some of the common debate points within the community on LLMs (parametric knowledge) and Knowledge Graphs (explicit knowledge) and speculate on opportunities and visions that the renewed focus brings, as well as related research topics and challenges.
Cite as

Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux. Large Language Models and Knowledge Graphs: Opportunities and Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 2:1-2:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{pan_et_al:TGDK.1.1.2,
  author =	{Pan, Jeff Z. and Razniewski, Simon and Kalo, Jan-Christoph and Singhania, Sneha and Chen, Jiaoyan and Dietze, Stefan and Jabeen, Hajira and Omeliyanenko, Janna and Zhang, Wen and Lissandrini, Matteo and Biswas, Russa and de Melo, Gerard and Bonifati, Angela and Vakaj, Edlira and Dragoni, Mauro and Graux, Damien},
  title =	{{Large Language Models and Knowledge Graphs: Opportunities and Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:38},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.2},
  URN =		{urn:nbn:de:0030-drops-194766},
  doi =		{10.4230/TGDK.1.1.2},
  annote =	{Keywords: Large Language Models, Pre-trained Language Models, Knowledge Graphs, Ontology, Retrieval Augmented Language Models}
}
Document
Survey
DOI: 10.4230/TGDK.1.1.4
Knowledge Graph Embeddings: Open Challenges and Opportunities

Authors: Russa Biswas, Lucie-Aimée Kaffee, Michael Cochez, Stefania Dumbrava, Theis E. Jendal, Matteo Lissandrini, Vanessa Lopez, Eneldo Loza Mencía, Heiko Paulheim, Harald Sack, Edlira Kalemi Vakaj, and Gerard de Melo

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
While Knowledge Graphs (KGs) have long been used as valuable sources of structured knowledge, in recent years, KG embeddings have become a popular way of deriving numeric vector representations from them, for instance, to support knowledge graph completion and similarity search. This study surveys advances as well as open challenges and opportunities in this area. For instance, the most prominent embedding models focus primarily on structural information. However, there has been notable progress in incorporating further aspects, such as semantics, multi-modal, temporal, and multilingual features. Most embedding techniques are assessed using human-curated benchmark datasets for the task of link prediction, neglecting other important real-world KG applications. Many approaches assume a static knowledge graph and are unable to account for dynamic changes. Additionally, KG embeddings may encode data biases and lack interpretability. Overall, this study provides an overview of promising research avenues to learn improved KG embeddings that can address a more diverse range of use cases.
Cite as

Russa Biswas, Lucie-Aimée Kaffee, Michael Cochez, Stefania Dumbrava, Theis E. Jendal, Matteo Lissandrini, Vanessa Lopez, Eneldo Loza Mencía, Heiko Paulheim, Harald Sack, Edlira Kalemi Vakaj, and Gerard de Melo. Knowledge Graph Embeddings: Open Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 4:1-4:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{biswas_et_al:TGDK.1.1.4,
  author =	{Biswas, Russa and Kaffee, Lucie-Aim\'{e}e and Cochez, Michael and Dumbrava, Stefania and Jendal, Theis E. and Lissandrini, Matteo and Lopez, Vanessa and Menc{\'\i}a, Eneldo Loza and Paulheim, Heiko and Sack, Harald and Vakaj, Edlira Kalemi and de Melo, Gerard},
  title =	{{Knowledge Graph Embeddings: Open Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:32},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.4},
  URN =		{urn:nbn:de:0030-drops-194783},
  doi =		{10.4230/TGDK.1.1.4},
  annote =	{Keywords: Knowledge Graphs, KG embeddings, Link prediction, KG applications}
}
Document
PACE Solver Description
DOI: 10.4230/LIPIcs.IPEC.2022.29
PACE Solver Description: Hust-Solver - A Heuristic Algorithm of Directed Feedback Vertex Set Problem

Authors: YuMing Du, QingYun Zhang, JunZhou Xu, ShunGen Zhang, Chao Liao, ZhiHuai Chen, ZhiBo Sun, ZhouXing Su, JunWen Ding, Chen Wu, PinYan Lu, and ZhiPeng Lv

Published in: LIPIcs, Volume 249, 17th International Symposium on Parameterized and Exact Computation (IPEC 2022)

Abstract
A directed graph is formed by vertices and arcs from one vertex to another. The feedback vertex set problem (FVSP) consists in making a given directed graph acyclic by removing as few vertices as possible. In this write-up, we outline the core techniques used in the heuristic feedback vertex set algorithm, submitted to the heuristic track of the 2022 PACE challenge.
Cite as

YuMing Du, QingYun Zhang, JunZhou Xu, ShunGen Zhang, Chao Liao, ZhiHuai Chen, ZhiBo Sun, ZhouXing Su, JunWen Ding, Chen Wu, PinYan Lu, and ZhiPeng Lv. PACE Solver Description: Hust-Solver - A Heuristic Algorithm of Directed Feedback Vertex Set Problem. In 17th International Symposium on Parameterized and Exact Computation (IPEC 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 249, pp. 29:1-29:3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{du_et_al:LIPIcs.IPEC.2022.29,
  author =	{Du, YuMing and Zhang, QingYun and Xu, JunZhou and Zhang, ShunGen and Liao, Chao and Chen, ZhiHuai and Sun, ZhiBo and Su, ZhouXing and Ding, JunWen and Wu, Chen and Lu, PinYan and Lv, ZhiPeng},
  title =	{{PACE Solver Description: Hust-Solver - A Heuristic Algorithm of Directed Feedback Vertex Set Problem}},
  booktitle =	{17th International Symposium on Parameterized and Exact Computation (IPEC 2022)},
  pages =	{29:1--29:3},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-260-0},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{249},
  editor =	{Dell, Holger and Nederlof, Jesper},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2022.29},
  URN =		{urn:nbn:de:0030-drops-173855},
  doi =		{10.4230/LIPIcs.IPEC.2022.29},
  annote =	{Keywords: directed feedback vertex set, local search, simulated annealing, set covering}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2022.89
Almost Tight Approximation Hardness for Single-Source Directed k-Edge-Connectivity

Authors: Chao Liao, Qingyun Chen, Bundit Laekhanukit, and Yuhao Zhang

Published in: LIPIcs, Volume 229, 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)

Abstract
In the k-outconnected directed Steiner tree problem (k-DST), we are given an n-vertex directed graph G = (V,E) with edge costs, a connectivity requirement k, a root r ∈ V and a set of terminals T ⊆ V. The goal is to find a minimum-cost subgraph H ⊆ G that has k edge-disjoint paths from the root vertex r to every terminal t ∈ T. The problem is NP-hard, and inapproximability results are known in several parameters, e.g., hardness in terms of n: log^{2-ε}n-hardness for k = 1 [Halperin and Krauthgamer, STOC'03], 2^{log^{1-ε}n}-hardness for general case [Cheriyan, Laekhanukit, Naves and Vetta, SODA'12], hardness in terms of k [Cheriyan et al., SODA'12; Laekhanukit, SODA'14; Manurangsi, IPL'19] and hardness in terms of |T| [Laekhanukit, SODA'14]. In this paper, we show the approximation hardness of k-DST for various parameters. - Ω(|T|/log |T|)-approximation hardness, which holds under the standard complexity assumption NP≠ ZPP. The inapproximability ratio is tightened to Ω(|T|) under the Strongish Planted Clique Hypothesis [Manurangsi, Rubinstein and Schramm, ITCS 2021]. The latter hardness result matches the approximation ratio of |T| obtained by a trivial approximation algorithm, thus closing the long-standing open problem. - Ω(2^{k/2} / k)-approximation hardness for the general case of k-DST under the assumption NP≠ZPP. This is the first hardness result known for survivable network design problems with an inapproximability ratio exponential in k. - Ω((k/L)^{L/4})-approximation hardness for k-DST on L-layered graphs for L ≤ O(log n). This almost matches the approximation ratio of O(k^{L-1}⋅ L ⋅ log |T|) achieved in O(n^L)-time due to Laekhanukit [ICALP'16]. We further extend our hardness results in terms of |T| to the undirected cases of k-DST, namely the single-source k-vertex-connected Steiner tree and the k-edge-connected group Steiner tree problems. Thus, we obtain Ω(|T|/log |T|) and Ω(|T|) approximation hardness for both problems under the assumption NP≠ ZPP and the Strongish Planted Clique Hypothesis, respectively. This again matches the upper bound obtained by trivial algorithms.
Cite as

Chao Liao, Qingyun Chen, Bundit Laekhanukit, and Yuhao Zhang. Almost Tight Approximation Hardness for Single-Source Directed k-Edge-Connectivity. In 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 229, pp. 89:1-89:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{liao_et_al:LIPIcs.ICALP.2022.89,
  author =	{Liao, Chao and Chen, Qingyun and Laekhanukit, Bundit and Zhang, Yuhao},
  title =	{{Almost Tight Approximation Hardness for Single-Source Directed k-Edge-Connectivity}},
  booktitle =	{49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)},
  pages =	{89:1--89:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-235-8},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{229},
  editor =	{Boja\'{n}czyk, Miko{\l}aj and Merelli, Emanuela and Woodruff, David P.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2022.89},
  URN =		{urn:nbn:de:0030-drops-164309},
  doi =		{10.4230/LIPIcs.ICALP.2022.89},
  annote =	{Keywords: Directed Steiner Tree, Hardness of Approximation, Fault-Tolerant and Survivable Network Design}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX-RANDOM.2019.34
Counting Independent Sets and Colorings on Random Regular Bipartite Graphs

Authors: Chao Liao, Jiabao Lin, Pinyan Lu, and Zhenyu Mao

Published in: LIPIcs, Volume 145, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019)

Abstract
We give a fully polynomial-time approximation scheme (FPTAS) to count the number of independent sets on almost every Delta-regular bipartite graph if Delta >= 53. In the weighted case, for all sufficiently large integers Delta and weight parameters lambda = Omega~ (1/(Delta)), we also obtain an FPTAS on almost every Delta-regular bipartite graph. Our technique is based on the recent work of Jenssen, Keevash and Perkins (SODA, 2019) and we also apply it to confirm an open question raised there: For all q >= 3 and sufficiently large integers Delta=Delta(q), there is an FPTAS to count the number of q-colorings on almost every Delta-regular bipartite graph.
Cite as

Chao Liao, Jiabao Lin, Pinyan Lu, and Zhenyu Mao. Counting Independent Sets and Colorings on Random Regular Bipartite Graphs. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 145, pp. 34:1-34:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{liao_et_al:LIPIcs.APPROX-RANDOM.2019.34,
  author =	{Liao, Chao and Lin, Jiabao and Lu, Pinyan and Mao, Zhenyu},
  title =	{{Counting Independent Sets and Colorings on Random Regular Bipartite Graphs}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2019)},
  pages =	{34:1--34:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-125-2},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{145},
  editor =	{Achlioptas, Dimitris and V\'{e}gh, L\'{a}szl\'{o} A.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX-RANDOM.2019.34},
  URN =		{urn:nbn:de:0030-drops-112498},
  doi =		{10.4230/LIPIcs.APPROX-RANDOM.2019.34},
  annote =	{Keywords: Approximate counting, Polymer model, Hardcore model, Coloring, Random bipartite graphs}
}
  • Refine by Type
  • 12 Document/PDF
  • 9 Document/HTML

  • Refine by Publication Year
  • 1 2026
  • 6 2025
  • 2 2023
  • 2 2022
  • 1 2019

  • Refine by Author
  • 3 Liao, Chao
  • 2 Biswas, Russa
  • 2 Langmead, Ben
  • 2 Lissandrini, Matteo
  • 2 de Melo, Gerard
  • Show More...

  • Refine by Series/Journal
  • 9 LIPIcs
  • 1 OASIcs
  • 2 TGDK

  • Refine by Classification
  • 2 Applied computing → Computational genomics
  • 2 Theory of computation → Random walks and Markov chains
  • 1 Applied computing → Operations research
  • 1 Computing methodologies → Knowledge representation and reasoning
  • 1 Computing methodologies → Machine learning approaches
  • Show More...

  • Refine by Keyword
  • 2 Glauber dynamics
  • 2 Knowledge Graphs
  • 1 Aerospace Applications
  • 1 Approximate counting
  • 1 Burrows-Wheeler Transform
  • Show More...

Any Issues?
X

Feedback on the Current Page

CAPTCHA

Thanks for your feedback!

Feedback submitted to Dagstuhl Publishing

Could not send message

Please try again later or send an E-mail
© 2023-2026 Schloss Dagstuhl – LZI GmbH Schloss Dagstuhl – LZI GmbH About DROPS Imprint Privacy Contact