26 Search Results for "Seshia, Sanjit A."

Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
DOI: 10.4230/LIPIcs.TIME.2025.6
GradSTL: Comprehensive Signal Temporal Logic for Neurosymbolic Reasoning and Learning

Authors: Mark Chevallier, Filip Smola, Richard Schmoetten, and Jacques D. Fleuriot

Published in: LIPIcs, Volume 355, 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)

Abstract
We present GradSTL, the first fully comprehensive implementation of signal temporal logic (STL) suitable for integration with neurosymbolic learning. In particular, GradSTL can successfully evaluate any STL constraint over any signal, regardless of how it is sampled. Our formally verified approach specifies smooth STL semantics over tensors, with formal proofs of soundness and of correctness of its derivative function. Our implementation is generated automatically from this formalisation, without manual coding, guaranteeing correctness by construction. We show via a case study that using our implementation, a neurosymbolic process learns to satisfy a pre-specified STL constraint. Our approach offers a highly rigorous foundation for integrating signal temporal logic and learning by gradient descent.
Cite as

Mark Chevallier, Filip Smola, Richard Schmoetten, and Jacques D. Fleuriot. GradSTL: Comprehensive Signal Temporal Logic for Neurosymbolic Reasoning and Learning. In 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 355, pp. 6:1-6:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chevallier_et_al:LIPIcs.TIME.2025.6,
  author =	{Chevallier, Mark and Smola, Filip and Schmoetten, Richard and Fleuriot, Jacques D.},
  title =	{{GradSTL: Comprehensive Signal Temporal Logic for Neurosymbolic Reasoning and Learning}},
  booktitle =	{32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)},
  pages =	{6:1--6:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-401-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{355},
  editor =	{Vidal, Thierry and Wa{\l}\k{e}ga, Przemys{\l}aw Andrzej},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TIME.2025.6},
  URN =		{urn:nbn:de:0030-drops-244528},
  doi =		{10.4230/LIPIcs.TIME.2025.6},
  annote =	{Keywords: Signal temporal logic, spatio-temporal reasoning, neurosymbolic learning}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.5
A Mechanized First-Order Theory of Algebraic Data Types with Pattern Matching

Authors: Joshua M. Cohen

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
Algebraic data types (ADTs) and pattern matching are widely used to write elegant functional programs and to specify program behavior. These constructs are critical to most general-purpose interactive theorem provers (e.g. Lean, Rocq/Coq), first-order SMT-based deductive verifiers (e.g. Dafny, VeriFast), and intermediate verification languages (e.g. Why3). Such features require layers of compilation - in Rocq, pattern matches are compiled to remove nesting, while SMT-based tools further axiomatize ADTs with a first-order specification. However, these critical steps have been omitted from prior formalizations of such toolchains (e.g. MetaRocq). We give the first proved-sound sophisticated pattern matching compiler (based on Maranget’s compilation to decision trees) and first-order axiomatization of ADTs, both based on Why3 implementations. We prove the soundness of exhaustiveness checking, extending pen-and-paper proofs from the literature, and formulate a robustness property with which we find an exhaustiveness-related bug in Why3. We show that many of our proofs could be useful for reasoning about any first-order program verifier supporting ADTs.
Cite as

Joshua M. Cohen. A Mechanized First-Order Theory of Algebraic Data Types with Pattern Matching. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 5:1-5:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cohen:LIPIcs.ITP.2025.5,
  author =	{Cohen, Joshua M.},
  title =	{{A Mechanized First-Order Theory of Algebraic Data Types with Pattern Matching}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{5:1--5:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.5},
  URN =		{urn:nbn:de:0030-drops-246046},
  doi =		{10.4230/LIPIcs.ITP.2025.5},
  annote =	{Keywords: Pattern Matching Compilation, Algebraic Data Types, First-Order Logic}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.31
Compositional Reasoning for Parametric Probabilistic Automata

Authors: Hannah Mertens, Tim Quatmann, and Joost-Pieter Katoen

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
We establish an assume-guarantee (AG) framework for compositional reasoning about multi-objective queries in parametric probabilistic automata (pPA) - an extension to probabilistic automata (PA), where transition probabilities are functions over a finite set of parameters. We lift an existing framework for PA to the pPA setting, incorporating asymmetric, circular, and interleaving proof rules. Our approach enables the verification of a broad spectrum of multi-objective queries for pPA, encompassing probabilistic properties and (parametric) expected total rewards. Additionally, we introduce a rule for reasoning about monotonicity in composed pPAs.
Cite as

Hannah Mertens, Tim Quatmann, and Joost-Pieter Katoen. Compositional Reasoning for Parametric Probabilistic Automata. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 31:1-31:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mertens_et_al:LIPIcs.CONCUR.2025.31,
  author =	{Mertens, Hannah and Quatmann, Tim and Katoen, Joost-Pieter},
  title =	{{Compositional Reasoning for Parametric Probabilistic Automata}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{31:1--31:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.31},
  URN =		{urn:nbn:de:0030-drops-239810},
  doi =		{10.4230/LIPIcs.CONCUR.2025.31},
  annote =	{Keywords: Verification, Probabilistic systems, Assume-guarantee reasoning, Parametric Probabilistic Automata, Parameter synthesis}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.4
Monitorability for the Modal Mu-Calculus over Systems with Data: From Practice to Theory

Authors: Luca Aceto, Antonis Achilleos, Duncan Paul Attard, Léo Exibard, Adrian Francalanza, Anna Ingólfsdóttir, and Karoliina Lehtinen

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
Runtime verification consists in checking whether a system satisfies a given specification by observing the execution trace it produces. In the regular setting, the modal μ-calculus provides a versatile formalism for expressing specifications of the control flow of the system. This paper focuses on the data flow and studies an extension of that logic that allows it to express data-dependent properties, identifying fragments that can be verified at runtime and with what correctness guarantees. The logic studied here is closely related with register automata with guessing. That correspondence yields a monitor synthesis algorithm, and a strict hierarchy among the various fragments of the logic, in contrast to the regular setting. We then exhibit a fragment of the logic that can express all monitorable formulae in the logic without greatest fixed-points but not in the full logic, and show this is the best we can get.
Cite as

Luca Aceto, Antonis Achilleos, Duncan Paul Attard, Léo Exibard, Adrian Francalanza, Anna Ingólfsdóttir, and Karoliina Lehtinen. Monitorability for the Modal Mu-Calculus over Systems with Data: From Practice to Theory. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 4:1-4:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{aceto_et_al:LIPIcs.CONCUR.2025.4,
  author =	{Aceto, Luca and Achilleos, Antonis and Attard, Duncan Paul and Exibard, L\'{e}o and Francalanza, Adrian and Ing\'{o}lfsd\'{o}ttir, Anna and Lehtinen, Karoliina},
  title =	{{Monitorability for the Modal Mu-Calculus over Systems with Data: From Practice to Theory}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{4:1--4:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.4},
  URN =		{urn:nbn:de:0030-drops-239546},
  doi =		{10.4230/LIPIcs.CONCUR.2025.4},
  annote =	{Keywords: Runtime verification, monitorability, \muHML with data, register automata}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.WABI.2025.2
We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk)

Authors: Ben Langmead

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Since the arrival of second-generation sequencing, we have needed to build indexes over reference sequences - e.g. genomes and transcriptomes - in order to solve read alignment and classification problems efficiently [Langmead et al., 2009; Li and Durbin, 2009; Li et al., 2009]. The rule has been: what we can index determines what we can do. When indexing strings, we can use methods like suffix arrays [Manber and Myers, 1993], the Burrows-Wheeler Transform (BWT) [Burrows and Wheeler, 1994] / FM Index [Ferragina and Manzini, 2000], or k-mer indexes [Marchet et al., 2021]. What if we want to index objects more complex than strings? A pangenome, for example, is a large collection of similar strings, e.g. the hundreds of assemblies that make up the Human Pangenome Reference [Liao et al., 2023] or all the bacteria in the Refseq database [Goldfarb et al., 2025]. We may wish to combine these strings into a multiple sequence alignment (MSA) or a graph first. Can we index those efficiently? In many useful cases the answer is "yes," but in others the answer is "no." The story of how we learned exactly when the answer is "yes" versus "no" unfolded through a sequence of insights. Here we review this story, eventually arriving at the definition of Wheeler graphs as discovered and formalized by Gagie, Manzini and Sirén [Gagie et al., 2017]. We will focus on indexes based on the BWT, since these (a) are lossless full-text indexes, (b) are widely used in practice [Langmead et al., 2009; Li and Durbin, 2009], and (c) form the theoretical throughline for all the indexing strategies on the path to Wheeler graphs. We will trace the BWT-based indexing story from the early days of the FM Index, though its step-by-step gobbling up of trees (XBW-transform [Ferragina et al., 2005]) and de Bruijn Graphs (BOSS representation [Bowe et al., 2012]), and to the eventual formalization of Wheeler graphs [Gagie et al., 2017]. Along the way, we will define and update our notions of what it means to track a consecutive range of elements in the structure, and what it means for an index to be efficient. We will also connect these notions to automata [Sipser, 1996], noting how the indexability of Wheeler graphs (also called Wheeler automata) is connected to the mechanics of how to efficiently represent and simulate a finite automaton [Alanko et al., 2021]. With this context, we can imagine improved indexes for the future of genomics and pangenomics. De Bruijn are extremely practical and are the most widely used among the non-string data structures that are also Wheeler graphs. But we might prefer other options. For example, de Bruijn graphs have the undesirable property that they usually encode not only the true longer-than-k substrings of the original text, but also "false" substrings that span repeats. Related to this, paths through the de Bruijn graph can "glue" substrings together that are horizontally distant in the MSA. Could other Wheeler graphs be practical alternatives to de Bruijn graphs? For instance, the original GCSA study by Sirén, Välimäki and Mäkinen proposed a way to convert a multiple alignment into an automaton that either is a Wheeler graph or can be made into one [Sirén et al., 2014]. This warrants further exploration, possibly with the help of improved tools for solving the NP-complete problem of recognizing whether a graph is a Wheeler graph [Chao et al., 2023]. The notion of BWT tunnels [Baier, 2018] gives another route: we can begin with a concatenated pangenome strings and compress it by identifying and collapsing BWT tunnels. This yields a Wheeler graph that is compressed like the de Bruijn graph, but without departing from the exact contents or coordinate systems of the original genomes. The future might need us to explore all these Wheeler-graph indexes, along with the also highly practical and always-improving world of indexes buiover collections of strings [Gagie et al., 2018].
Cite as

Ben Langmead. We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk). In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 2:1-2:2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{langmead:LIPIcs.WABI.2025.2,
  author =	{Langmead, Ben},
  title =	{{We Are What We Index; a Primer for the Wheeler Graph Era}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{2:1--2:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.2},
  URN =		{urn:nbn:de:0030-drops-239288},
  doi =		{10.4230/LIPIcs.WABI.2025.2},
  annote =	{Keywords: Indexing, Burrows-Wheeler Transform}
}
Document
Short Paper
DOI: 10.4230/LIPIcs.CP.2025.42
Towards Modern and Modular SAT for LCG (Short Paper)

Authors: Jip J. Dekker, Alexey Ignatiev, Peter J. Stuckey, and Allen Z. Zhong

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
Lazy Clause Generation (LCG) is an architecture for building Constraint Programming (CP) solvers using an underlying Boolean Satisfiability (SAT) engine. The CP propagation engine lazily creates clauses that define the integer variables and impose problem restrictions. The SAT engine uses the clausal model to reason and search, including, crucially, the generation of nogoods. However, while SAT solving has made significant advances recently, the underlying SAT technology in most LCG solvers has largely remained the same. Using a new interface to SAT engines, IPASIR-UP, we can construct an LCG solver which can swap out the underlying SAT engine with any that supports the interface. This new approach means we need to revisit many of the design and engineering decisions for LCG solvers, to take maximum advantage of a better underlying SAT engine while adhering to the restrictions of the interface. In this paper, we explore the possibilities and challenges of using IPASIR-UP for LCG, showing that it can be used to create a highly competitive solver.
Cite as

Jip J. Dekker, Alexey Ignatiev, Peter J. Stuckey, and Allen Z. Zhong. Towards Modern and Modular SAT for LCG (Short Paper). In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 42:1-42:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dekker_et_al:LIPIcs.CP.2025.42,
  author =	{Dekker, Jip J. and Ignatiev, Alexey and Stuckey, Peter J. and Zhong, Allen Z.},
  title =	{{Towards Modern and Modular SAT for LCG}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{42:1--42:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.42},
  URN =		{urn:nbn:de:0030-drops-239038},
  doi =		{10.4230/LIPIcs.CP.2025.42},
  annote =	{Keywords: Lazy Clause Generation, Boolean Satisfiability, IPASIR-UP}
}
Document
DOI: 10.4230/OASIcs.Manzini.12
Wheeler Graphs and Wheeler Languages

Authors: Nicola Cotumaccio, Giovanna D'Agostino, Daniel Gibney, Alberto Policriti, Nicola Prezza, and Sharma V. Thankachan

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
Suffix sorting stands at the core of the most efficient solutions for indexed pattern matching: the suffix tree, the suffix array, compressed indexes based on the Burrows-Wheeler transform, and so on. In [Gagie, Manzini, Sirén, TCS 2017] this concept was extended to labeled graphs, obtaining the rich class of Wheeler graphs. This work opened a very fruitful line of research, ultimately generating results able to bridge the fields of compressed data structures, graph theory, and regular language theory. In a Wheeler graph, nodes are sorted according to the alphabetic order of their incoming labels, propagating this order through pairs of equally-labeled edges. This apparently-simple definition makes it possible to solve on Wheeler graphs problems (including, but not limited to: compression, subpath queries, NFA equivalence, determinization, minimization) that on general labeled graphs are extremely hard to solve, and induces a rich structure in the class of regular languages (Wheeler languages) recognized by automata whose state transition is a Wheeler graph. The goal of this survey is to provide a summary of (and intuitions behind) the results on Wheeler graphs that appeared in the literature since their introduction, in addition to a discussion of interesting problems that are still open in the field.
Cite as

Nicola Cotumaccio, Giovanna D'Agostino, Daniel Gibney, Alberto Policriti, Nicola Prezza, and Sharma V. Thankachan. Wheeler Graphs and Wheeler Languages. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 12:1-12:28, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cotumaccio_et_al:OASIcs.Manzini.12,
  author =	{Cotumaccio, Nicola and D'Agostino, Giovanna and Gibney, Daniel and Policriti, Alberto and Prezza, Nicola and Thankachan, Sharma V.},
  title =	{{Wheeler Graphs and Wheeler Languages}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{12:1--12:28},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.12},
  URN =		{urn:nbn:de:0030-drops-239205},
  doi =		{10.4230/OASIcs.Manzini.12},
  annote =	{Keywords: Wheeler languages, Wheeler graphs, pattern matching, indexing, compressed data structures}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.15
RustSAT: A Library for SAT Solving in Rust

Authors: Christoph Jabs

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
State-of-the-art Boolean satisfiability (SAT) solvers constitute a practical and competitive approach for solving various real-world problems. To encourage their widespread adoption, the relatively high barrier of entry following from the low level syntax of SAT and the expert knowledge required to achieve tight integration with SAT solvers should be further reduced. We present RustSAT, a library with the aim of making SAT solving technology readily available in the Rust programming language. RustSAT provides functionality for helping with generating (Max)SAT instances, writing them to, or reading them from files. Furthermore, RustSAT includes interfaces to various state-of-the-art SAT solvers available with a unified Rust API. Lastly, RustSAT implements several encodings for higher level constraints (at-most-one, cardinality, and pseudo-Boolean), which are also available via a C and Python API.
Cite as

Christoph Jabs. RustSAT: A Library for SAT Solving in Rust. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 15:1-15:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jabs:LIPIcs.SAT.2025.15,
  author =	{Jabs, Christoph},
  title =	{{RustSAT: A Library for SAT Solving in Rust}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{15:1--15:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.15},
  URN =		{urn:nbn:de:0030-drops-237498},
  doi =		{10.4230/LIPIcs.SAT.2025.15},
  annote =	{Keywords: Rust, library, SAT solvers, constraint encodings}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.20
Scalable Precise Computation of Shannon Entropy

Authors: Yong Lai, Haolong Tong, Zhenghang Xu, and Minghao Yin

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
Quantitative information flow analyses (QIF) are a class of techniques for measuring the amount of confidential information leaked by a program to its public outputs. Shannon entropy is an important method to quantify the amount of leakage in QIF. This paper focuses on the programs modeled in Boolean constraints and optimizes the two stages of the Shannon entropy computation to implement a scalable precise tool PSE. In the first stage, we design a knowledge compilation language called ADD[∧] that combines Algebraic Decision Diagrams and conjunctive decomposition. ADD[∧] avoids enumerating possible outputs of a program and supports tractable entropy computation. In the second stage, we optimize the model counting queries that are used to compute the probabilities of outputs. We compare PSE with the state-of-the-art probabilistic approximately correct tool EntropyEstimation, which was shown to significantly outperform the previous precise tools. The experimental results demonstrate that PSE solved 56 more benchmarks compared to EntropyEstimation in a total of 459. For 98% of the benchmarks that both PSE and EntropyEstimation solved, PSE is at least 10× as efficient as EntropyEstimation.
Cite as

Yong Lai, Haolong Tong, Zhenghang Xu, and Minghao Yin. Scalable Precise Computation of Shannon Entropy. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 20:1-20:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lai_et_al:LIPIcs.SAT.2025.20,
  author =	{Lai, Yong and Tong, Haolong and Xu, Zhenghang and Yin, Minghao},
  title =	{{Scalable Precise Computation of Shannon Entropy}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{20:1--20:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.20},
  URN =		{urn:nbn:de:0030-drops-237540},
  doi =		{10.4230/LIPIcs.SAT.2025.20},
  annote =	{Keywords: Knowledge Compilation, Algebraic Decision Diagrams, Quantitative Information Flow, Shannon Entropy}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.FSCD.2025.2
Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs (Invited Talk)

Authors: Matthew L. Daggitt, Wen Kokke, Robert Atkey, Ekaterina Komendantskaya, Natalia Slusarz, and Luca Arnaboldi

Published in: LIPIcs, Volume 337, 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)

Abstract
Neuro-symbolic programs, i.e. programs containing both machine learning components and traditional symbolic code, are becoming increasingly widespread. Finding a general methodology for verifying such programs is challenging due to both the number of different tools involved and the intricate interface between the "neural" and "symbolic" program components. In this paper we present a general decomposition of the neuro-symbolic verification problem into parts, and examine the problem of the embedding gap that occurs when one tries to combine proofs about the neural and symbolic components. To address this problem we then introduce Vehicle - standing as an abbreviation for a "verification condition language" - an intermediate programming language interface between machine learning frameworks, automated theorem provers, and dependently-typed formalisations of neuro-symbolic programs. Vehicle allows users to specify the properties of the neural components of neuro-symbolic programs once, and then safely compile the specification to each interface using a tailored typing and compilation procedure. We give a high-level overview of Vehicle’s overall design, its interfaces and compilation & type-checking procedures, and then demonstrate its utility by formally verifying the safety of a simple autonomous car controlled by a neural network, operating in a stochastic environment with imperfect information.
Cite as

Matthew L. Daggitt, Wen Kokke, Robert Atkey, Ekaterina Komendantskaya, Natalia Slusarz, and Luca Arnaboldi. Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs (Invited Talk). In 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 337, pp. 2:1-2:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{daggitt_et_al:LIPIcs.FSCD.2025.2,
  author =	{Daggitt, Matthew L. and Kokke, Wen and Atkey, Robert and Komendantskaya, Ekaterina and Slusarz, Natalia and Arnaboldi, Luca},
  title =	{{Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs}},
  booktitle =	{10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)},
  pages =	{2:1--2:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-374-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{337},
  editor =	{Fern\'{a}ndez, Maribel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2025.2},
  URN =		{urn:nbn:de:0030-drops-236172},
  doi =		{10.4230/LIPIcs.FSCD.2025.2},
  annote =	{Keywords: Neural Network Verification, Types, Interactive Theorem Provers}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2025.138
Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs

Authors: Michal Ajdarów, James C. A. Main, Petr Novotný, and Mickael Randour

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Markov decision processes (MDPs) are a canonical model to reason about decision making within a stochastic environment. We study a fundamental class of infinite MDPs: one-counter MDPs (OC-MDPs). They extend finite MDPs via an associated counter taking natural values, thus inducing an infinite MDP over the set of configurations (current state and counter value). We consider two characteristic objectives: reaching a target state (state-reachability), and reaching a target state with counter value zero (selective termination). The synthesis problem for the latter is not known to be decidable and connected to major open problems in number theory. Furthermore, even seemingly simple strategies (e.g., memoryless ones) in OC-MDPs might be impossible to build in practice (due to the underlying infinite configuration space): we need finite, and preferably small, representations. To overcome these obstacles, we introduce two natural classes of concisely represented strategies based on a (possibly infinite) partition of counter values in intervals. For both classes, and both objectives, we study the verification problem (does a given strategy ensure a high enough probability for the objective?), and two synthesis problems (does there exist such a strategy?): one where the interval partition is fixed as input, and one where it is only parameterized. We develop a generic approach based on a compression of the induced infinite MDP that yields decidability in all cases, with all complexities within PSPACE.
Cite as

Michal Ajdarów, James C. A. Main, Petr Novotný, and Mickael Randour. Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 138:1-138:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ajdarow_et_al:LIPIcs.ICALP.2025.138,
  author =	{Ajdar\'{o}w, Michal and Main, James C. A. and Novotn\'{y}, Petr and Randour, Mickael},
  title =	{{Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{138:1--138:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.138},
  URN =		{urn:nbn:de:0030-drops-235157},
  doi =		{10.4230/LIPIcs.ICALP.2025.138},
  annote =	{Keywords: one-counter Markov decision processes, randomised strategies, termination, reachability}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.14
IsaBIL: A Framework for Verifying (In)correctness of Binaries in Isabelle/HOL

Authors: Matt Griffin, Brijesh Dongol, and Azalea Raad

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
This paper presents IsaBIL, a binary analysis framework in Isabelle/HOL that is based on the widely used Binary Analysis Platform (BAP). Specifically, in IsaBIL, we formalise BAP’s intermediate language, called BIL and integrate it with Hoare logic (to enable proofs of correctness) as well as incorrectness logic (to enable proofs of incorrectness). IsaBIL inherits the full flexibility of BAP, allowing us to verify binaries for a wide range of languages (C, C++, Rust), toolchains (LLVM, Ghidra) and target architectures (x86, RISC-V), and can also be used when the source code for a binary is unavailable. To make verification tractable, we develop a number of big-step rules that combine BIL’s existing small-step rules at different levels of abstraction to support reuse. We develop high-level reasoning rules for RISC-V instructions (our main target architecture) to further optimise verification. Additionally, we develop Isabelle proof tactics that exploit common patterns in C binaries for RISC-V to discharge large numbers of proof goals (often in the 100s) automatically. IsaBIL includes an Isabelle/ML based parser for BIL programs, allowing one to automatically generate the associated Isabelle/HOL program locale from a BAP output. Taken together, IsaBIL provides a highly flexible proof environment for program binaries. As examples, we prove correctness of key examples from the Joint Strike Fighter coding standards and the MITRE database.
Cite as

Matt Griffin, Brijesh Dongol, and Azalea Raad. IsaBIL: A Framework for Verifying (In)correctness of Binaries in Isabelle/HOL. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 14:1-14:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{griffin_et_al:LIPIcs.ECOOP.2025.14,
  author =	{Griffin, Matt and Dongol, Brijesh and Raad, Azalea},
  title =	{{IsaBIL: A Framework for Verifying (In)correctness of Binaries in Isabelle/HOL}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{14:1--14:30},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.14},
  URN =		{urn:nbn:de:0030-drops-233070},
  doi =		{10.4230/LIPIcs.ECOOP.2025.14},
  annote =	{Keywords: Binary Analysis Platform, Isabelle/HOL, Hoare Logic, Incorrectness Logic}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.22
Quantifying Cache Side-Channel Leakage by Refining Set-Based Abstractions

Authors: Jacqueline L. Mitchell and Chao Wang

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
We propose an improved abstract interpretation based method for quantifying cache side-channel leakage by addressing two key components of precision loss in existing set-based cache abstractions. Our method targets two key sources of imprecision: (1) imprecision in the abstract transfer function used to update the abstract cache state when interpreting a memory access and (2) imprecision due to the incompleteness of the set-based domain. At the center of our method are two key improvements: (1) the introduction of a new transfer function for updating the abstract cache state which carefully leverages information in the abstract state to prevent the spurious aging of memory blocks and (2) a refinement of the set-based domain based on the finite powerset construction. We show that both the new abstract transformer and the domain refinement enjoy certain enhanced precision properties. We have implemented the method and compared it against the state-of-the-art technique on a suite of benchmark programs implementing both sorting algorithms and cryptographic algorithms. The experimental results show that our method is effective in improving the precision of cache side-channel leakage quantification.
Cite as

Jacqueline L. Mitchell and Chao Wang. Quantifying Cache Side-Channel Leakage by Refining Set-Based Abstractions. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 22:1-22:28, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mitchell_et_al:LIPIcs.ECOOP.2025.22,
  author =	{Mitchell, Jacqueline L. and Wang, Chao},
  title =	{{Quantifying Cache Side-Channel Leakage by Refining Set-Based Abstractions}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{22:1--22:28},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.22},
  URN =		{urn:nbn:de:0030-drops-233140},
  doi =		{10.4230/LIPIcs.ECOOP.2025.22},
  annote =	{Keywords: Abstract interpretation, side-channel, leakage quantification, cache}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.10
Bottom-Up Synthesis of Memory Mutations with Separation Logic

Authors: Kasra Ferdowsi and Hila Peleg

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Programming-by-Example (PBE) is the paradigm of program synthesis specified via input-output pairs. It is commonly used because examples are easy to provide and collect from the environment. A popular optimization for enumerative synthesis with examples is Observational Equivalence (OE), which groups programs into equivalence classes according to their evaluation on example inputs. Current formulations of OE, however, are severely limited by the assumption that the synthesizer’s target language contains only pure components with no side-effects, either enforcing this in their target language, or ignoring it, leading to an incorrect enumeration. This limits their ability to use realistic component sets. We address this limitation by borrowing from Separation Logic, which can compositionally reason about heap mutations. We reformulate PBE using a restricted Separation Logic: Concrete Heap Separation Logic (CHSL), transforming the search for programs into a proof search in CHSL. This lets us perform bottom-up enumerative synthesis without the need for expert-provided annotations or domain-specific inferences, but with three key advantages: we (i) preserve correctness in the presence of memory-mutating operations, (ii) compact the search space by representing many concrete programs as one under CHSL, and (iii) perform a provably correct OE-reduction. We present SObEq (Side-effects in OBservational EQuivalence), a bottom-up enumerative algorithm that, given a PBE task, searches for its CHSL derivation. The SObEq algorithm is proved correct with no purity assumptions: we show it is guaranteed to lose no solutions. We also evaluate our implementation of SObEq on benchmarks from the literature and online sources, and show that it produces high-quality results quickly.
Cite as

Kasra Ferdowsi and Hila Peleg. Bottom-Up Synthesis of Memory Mutations with Separation Logic. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 10:1-10:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ferdowsi_et_al:LIPIcs.ECOOP.2025.10,
  author =	{Ferdowsi, Kasra and Peleg, Hila},
  title =	{{Bottom-Up Synthesis of Memory Mutations with Separation Logic}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{10:1--10:32},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.10},
  URN =		{urn:nbn:de:0030-drops-233036},
  doi =		{10.4230/LIPIcs.ECOOP.2025.10},
  annote =	{Keywords: Program synthesis, observational equivalence}
}
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