44 Search Results for "Italiano, Giuseppe F."

Volume

OASIcs, Volume 48

15th Workshop on Algorithmic Approaches for Transportation Modelling, Optimization, and Systems (ATMOS 2015)

ATMOS 2015, September 17, 2015, Patras, Greece

Editors: Giuseppe F. Italiano and Marie Schmidt

Document
DOI: 10.4230/LIPIcs.SEA.2024.15
Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs

Authors: Daniel Hambly, Rhyd Lewis, and Padraig Corcoran

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
In this paper, we examine the NP-hard problem of identifying fixed-length s-t paths in edge-weighted graphs - that is, a path of a desired length k from a source vertex s to a target vertex t. Many existing strategies look at paths whose lengths are determined by the number of edges in the path. We, however, look at the length of the path as the sum of the edge weights. Here, three exact algorithms for this problem are proposed: the first based on an integer programming (IP) formulation, the second a backtracking algorithm, and the third based on an extension of Yen’s algorithm. Analysis of these algorithms on random graphs shows that the backtracking algorithm performs best on smaller values of k, whilst the IP is preferable for larger values of k.
Cite as

Daniel Hambly, Rhyd Lewis, and Padraig Corcoran. Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 15:1-15:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{hambly_et_al:LIPIcs.SEA.2024.15,
  author =	{Hambly, Daniel and Lewis, Rhyd and Corcoran, Padraig},
  title =	{{Determining Fixed-Length Paths in Directed and Undirected Edge-Weighted Graphs}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{15:1--15:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.15},
  URN =		{urn:nbn:de:0030-drops-203805},
  doi =		{10.4230/LIPIcs.SEA.2024.15},
  annote =	{Keywords: Graphs, paths, backtracking, integer programming, Yen’s algorithm}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.17
Vital Edges for (s,t)-Mincut: Efficient Algorithms, Compact Structures, & Optimal Sensitivity Oracles

Authors: Surender Baswana and Koustav Bhanja

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
Let G be a directed weighted graph on n vertices and m edges with designated source and sink vertices s and t. An edge in G is vital if its removal reduces the capacity of (s,t)-mincut. Since the seminal work of Ford and Fulkerson [CJM 1956], a long line of work has been done on computing the most vital edge and all vital edges of G. However, even after 60 years, the existing results are for either undirected or unweighted graphs. We present the following result for directed weighted graphs that also solves an open problem by Ausiello, Franciosa, Lari, and Ribichini [NETWORKS 2019]. 1. Algorithmic Results: There is an algorithm that computes all vital edges as well as the most vital edge of G using {O}(n) maximum (s,t)-flow computations. Vital edges play a crucial role in the design of sensitivity oracle for (s,t)-mincut - a compact data structure for reporting (s,t)-mincut after insertion/failure of any edge. For directed graphs, the only existing sensitivity oracle is for unweighted graphs by Picard and Queyranne [MPS 1982]. We present the first and optimal sensitivity oracle for directed weighted graphs as follows. 2. Sensitivity Oracles: a) There is an optimal O(n²) space data structure that can report an (s,t)-mincut C in O(|C|) time after the failure/insertion of any edge. b) There is an O(n) space data structure that can report the capacity of (s,t)-mincut after failure or insertion of any edge e in O(1) time if the capacity of edge e is known. A mincut for a vital edge e is an (s,t)-cut of the least capacity in which edge e is outgoing. For unweighted graphs, in a classical work, Picard and Queyranne [MPS 1982] designed an O(m) space directed acyclic graph (DAG) that stores and characterizes all mincuts for all vital edges. Conversely, there is a set containing at most n-1 (s,t)-cuts such that at least one mincut for every vital edge belongs to the set. We generalize these results for directed weighted graphs as follows. 3. Structural & Combinatorial Results: a) There is a set M containing at most n-1 (s,t)-cuts such that at least one mincut for every vital edge belongs to the set. This bound is tight as well. We also show that set M can be computed using O(n) maximum (s,t)-flow computations. b) We design two compact structures for storing and characterizing all mincuts for all vital edges - (i) an O(m) space DAG for partial and (ii) an O(mn) space structure for complete characterization. To arrive at our results, we develop new techniques, especially a generalization of maxflow-mincut Theorem by Ford and Fulkerson [CJM 1956], which might be of independent interest.
Cite as

Surender Baswana and Koustav Bhanja. Vital Edges for (s,t)-Mincut: Efficient Algorithms, Compact Structures, & Optimal Sensitivity Oracles. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 17:1-17:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{baswana_et_al:LIPIcs.ICALP.2024.17,
  author =	{Baswana, Surender and Bhanja, Koustav},
  title =	{{Vital Edges for (s,t)-Mincut: Efficient Algorithms, Compact Structures, \& Optimal Sensitivity Oracles}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{17:1--17:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.17},
  URN =		{urn:nbn:de:0030-drops-201601},
  doi =		{10.4230/LIPIcs.ICALP.2024.17},
  annote =	{Keywords: maxflow, vital edges, graph algorithms, structures, st-cuts, sensitivity oracle}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.58
New Tradeoffs for Decremental Approximate All-Pairs Shortest Paths

Authors: Michal Dory, Sebastian Forster, Yasamin Nazari, and Tijn de Vos

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
We provide new tradeoffs between approximation and running time for the decremental all-pairs shortest paths (APSP) problem. For undirected graphs with m edges and n nodes undergoing edge deletions, we provide four new approximate decremental APSP algorithms, two for weighted and two for unweighted graphs. Our first result is (2+ε)-APSP with total update time Õ(m^{1/2}n^{3/2}) (when m = n^{1+c} for any constant 0 < c < 1). Prior to our work the fastest algorithm for weighted graphs with approximation at most 3 had total Õ(mn) update time for (1+ε)-APSP [Bernstein, SICOMP 2016]. Our second result is (2+ε, W_{u,v})-APSP with total update time Õ(nm^{3/4}), where the second term is an additive stretch with respect to W_{u,v}, the maximum weight on the shortest path from u to v. Our third result is (2+ε)-APSP for unweighted graphs in Õ(m^{7/4}) update time, which for sparse graphs (m = o(n^{8/7})) is the first subquadratic (2+ε)-approximation. Our last result for unweighted graphs is (1+ε, 2(k-1))-APSP, for k ≥ 2, with Õ(n^{2-1/k}m^{1/k}) total update time (when m = n^{1+c} for any constant c > 0). For comparison, in the special case of (1+ε, 2)-approximation, this improves over the state-of-the-art algorithm by [Henzinger, Krinninger, Nanongkai, SICOMP 2016] with total update time of Õ(n^{2.5}). All of our results are randomized, work against an oblivious adversary, and have constant query time.
Cite as

Michal Dory, Sebastian Forster, Yasamin Nazari, and Tijn de Vos. New Tradeoffs for Decremental Approximate All-Pairs Shortest Paths. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 58:1-58:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{dory_et_al:LIPIcs.ICALP.2024.58,
  author =	{Dory, Michal and Forster, Sebastian and Nazari, Yasamin and de Vos, Tijn},
  title =	{{New Tradeoffs for Decremental Approximate All-Pairs Shortest Paths}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{58:1--58:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.58},
  URN =		{urn:nbn:de:0030-drops-202012},
  doi =		{10.4230/LIPIcs.ICALP.2024.58},
  annote =	{Keywords: Decremental Shortest Path, All-Pairs Shortest Paths}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.95
Fully Dynamic Strongly Connected Components in Planar Digraphs

Authors: Adam Karczmarz and Marcin Smulewicz

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
In this paper we consider maintaining strongly connected components (SCCs) of a directed planar graph subject to edge insertions and deletions. We show a data structure maintaining an implicit representation of the SCCs within Õ(n^{6/7}) worst-case time per update. The data structure supports, in O(log²{n}) time, reporting vertices of any specified SCC (with constant overhead per reported vertex) and aggregating vertex information (e.g., computing the maximum label) over all the vertices of that SCC. Furthermore, it can maintain global information about the structure of SCCs, such as the number of SCCs, or the size of the largest SCC. To the best of our knowledge, no fully dynamic SCCs data structures with sublinear update time have been previously known for any major subclass of digraphs. Our result should be contrasted with the n^{1-o(1)} amortized update time lower bound conditional on SETH, which holds even for dynamically maintaining whether a general digraph has more than two SCCs.
Cite as

Adam Karczmarz and Marcin Smulewicz. Fully Dynamic Strongly Connected Components in Planar Digraphs. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 95:1-95:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{karczmarz_et_al:LIPIcs.ICALP.2024.95,
  author =	{Karczmarz, Adam and Smulewicz, Marcin},
  title =	{{Fully Dynamic Strongly Connected Components in Planar Digraphs}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{95:1--95:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.95},
  URN =		{urn:nbn:de:0030-drops-202388},
  doi =		{10.4230/LIPIcs.ICALP.2024.95},
  annote =	{Keywords: dynamic strongly connected components, dynamic strong connectivity, dynamic reachability, planar graphs}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.101
On the Space Usage of Approximate Distance Oracles with Sub-2 Stretch

Authors: Tsvi Kopelowitz, Ariel Korin, and Liam Roditty

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
For an undirected unweighted graph G = (V,E) with n vertices and m edges, let d(u,v) denote the distance from u ∈ V to v ∈ V in G. An (α,β)-stretch approximate distance oracle (ADO) for G is a data structure that given u,v ∈ V returns in constant (or near constant) time a value dˆ(u,v) such that d(u,v) ≤ dˆ(u,v) ≤ α⋅ d(u,v) + β, for some reals α > 1, β. Thorup and Zwick [Mikkel Thorup and Uri Zwick, 2005] showed that one cannot beat stretch 3 with subquadratic space (in terms of n) for general graphs. Pǎtraşcu and Roditty [Mihai Pǎtraşcu and Liam Roditty, 2010] showed that one can obtain stretch 2 using O(m^{1/3}n^{4/3}) space, and so if m is subquadratic in n then the space usage is also subquadratic. Moreover, Pǎtraşcu and Roditty [Mihai Pǎtraşcu and Liam Roditty, 2010] showed that one cannot beat stretch 2 with subquadratic space even for graphs where m = Õ(n), based on the set-intersection hypothesis. In this paper we explore the conditions for which an ADO can beat stretch 2 while using subquadratic space. In particular, we show that if the maximum degree in G is Δ_G ≤ O(n^{1/k-ε}) for some 0 < ε ≤ 1/k, then there exists an ADO for G that uses Õ(n^{2-(kε)/3) space and has a (2,1-k)-stretch. For k = 2 this result implies a subquadratic sub-2 stretch ADO for graphs with Δ_G ≤ O(n^{1/2-ε}). Moreover, we prove a conditional lower bound, based on the set intersection hypothesis, which states that for any positive integer k ≤ log n, obtaining a sub-(k+2)/k stretch for graphs with Δ_G = Θ(n^{1/k}) requires Ω̃(n²) space. Thus, for graphs with maximum degree Θ(n^{1/2}), obtaining a sub-2 stretch requires Ω̃(n²) space.
Cite as

Tsvi Kopelowitz, Ariel Korin, and Liam Roditty. On the Space Usage of Approximate Distance Oracles with Sub-2 Stretch. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 101:1-101:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{kopelowitz_et_al:LIPIcs.ICALP.2024.101,
  author =	{Kopelowitz, Tsvi and Korin, Ariel and Roditty, Liam},
  title =	{{On the Space Usage of Approximate Distance Oracles with Sub-2 Stretch}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{101:1--101:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.101},
  URN =		{urn:nbn:de:0030-drops-202443},
  doi =		{10.4230/LIPIcs.ICALP.2024.101},
  annote =	{Keywords: Graph algorithms, Approximate distance oracle, data structures, shortest path}
}
Document
DOI: 10.4230/LIPIcs.SAND.2024.6
Black Hole Search in Dynamic Tori

Authors: Adri Bhattacharya, Giuseppe F. Italiano, and Partha Sarathi Mandal

Published in: LIPIcs, Volume 292, 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)

Abstract
We investigate the black hole search problem using a set of mobile agents in a dynamic torus. A black hole is defined as a dangerous stationary node that has the capability to destroy any number of incoming agents without leaving any trace of its existence. A torus of size n× m (3 ≤ n ≤ m) is a collection of n row rings and m column rings, and the dynamicity is such that each ring is considered to be 1-interval connected, i.e., in other words at most one edge can be missing from each ring at any round. The parameters which define the efficiency of any black hole search algorithm are: the number of agents and the number of rounds (or time) for termination. We consider two initial configurations of mobile agents: first, the agents are co-located, second, the agents are scattered. In each case, we establish lower and upper bounds on the number of agents and on the amount of time required to solve the black hole search problem.
Cite as

Adri Bhattacharya, Giuseppe F. Italiano, and Partha Sarathi Mandal. Black Hole Search in Dynamic Tori. In 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 292, pp. 6:1-6:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bhattacharya_et_al:LIPIcs.SAND.2024.6,
  author =	{Bhattacharya, Adri and Italiano, Giuseppe F. and Mandal, Partha Sarathi},
  title =	{{Black Hole Search in Dynamic Tori}},
  booktitle =	{3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)},
  pages =	{6:1--6:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-315-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{292},
  editor =	{Casteigts, Arnaud and Kuhn, Fabian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2024.6},
  URN =		{urn:nbn:de:0030-drops-198840},
  doi =		{10.4230/LIPIcs.SAND.2024.6},
  annote =	{Keywords: Black Hole Search, Time Varying Graphs, Dynamic Torus, Distributed Algorithms, Mobile Agents}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2023.39
Dynamic Planar Embedding Is in DynFO

Authors: Samir Datta, Asif Khan, and Anish Mukherjee

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Abstract
Planar Embedding is a drawing of a graph on the plane such that the edges do not intersect each other except at the vertices. We know that testing the planarity of a graph and computing its embedding (if it exists), can efficiently be computed, both sequentially [John E. Hopcroft and Robert Endre Tarjan, 1974] and in parallel [Vijaya Ramachandran and John H. Reif, 1994], when the entire graph is presented as input. In the dynamic setting, the input graph changes one edge at a time through insertion and deletions and planarity testing/embedding has to be updated after every change. By storing auxilliary information we can improve the complexity of dynamic planarity testing/embedding over the obvious recomputation from scratch. In the sequential dynamic setting, there has been a series of works [David Eppstein et al., 1996; Giuseppe F. Italiano et al., 1993; Jacob Holm et al., 2018; Jacob Holm and Eva Rotenberg, 2020], culminating in the breakthrough result of polylog(n) sequential time (amortized) planarity testing algorithm of Holm and Rotenberg [Jacob Holm and Eva Rotenberg, 2020]. In this paper we study planar embedding through the lens of DynFO, a parallel dynamic complexity class introduced by Patnaik et al [Sushant Patnaik and Neil Immerman, 1997] (also [Guozhu Dong et al., 1995]). We show that it is possible to dynamically maintain whether an edge can be inserted to a planar graph without causing non-planarity in DynFO. We extend this to show how to maintain an embedding of a planar graph under both edge insertions and deletions, while rejecting edge insertions that violate planarity. Our main idea is to maintain embeddings of only the triconnected components and a special two-colouring of separating pairs that enables us to side-step cascading flips when embedding of a biconnected planar graph changes, a major issue for sequential dynamic algorithms [Jacob Holm and Eva Rotenberg, 2020; Jacob Holm and Eva Rotenberg, 2020].
Cite as

Samir Datta, Asif Khan, and Anish Mukherjee. Dynamic Planar Embedding Is in DynFO. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 39:1-39:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{datta_et_al:LIPIcs.MFCS.2023.39,
  author =	{Datta, Samir and Khan, Asif and Mukherjee, Anish},
  title =	{{Dynamic Planar Embedding Is in DynFO}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{39:1--39:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.39},
  URN =		{urn:nbn:de:0030-drops-185736},
  doi =		{10.4230/LIPIcs.MFCS.2023.39},
  annote =	{Keywords: Dynamic Complexity, Planar graphs, Planar embedding}
}
Document
DOI: 10.4230/LIPIcs.ESA.2022.60
Computing the 4-Edge-Connected Components of a Graph: An Experimental Study

Authors: Loukas Georgiadis, Giuseppe F. Italiano, and Evangelos Kosinas

Published in: LIPIcs, Volume 244, 30th Annual European Symposium on Algorithms (ESA 2022)

Abstract
The notions of edge-cuts and k-edge-connected components are fundamental in graph theory with numerous practical applications. Very recently, the first linear-time algorithms for computing all the 3-edge cuts and the 4-edge-connected components of a graph have been introduced. In this paper we present carefully engineered implementations of these algorithms and evaluate their efficiency in practice, by performing a thorough empirical study using both real-world graphs taken from a variety of application areas, as well as artificial graphs. To the best of our knowledge, this is the first experimental study for these problems, which highlights the merits and weaknesses of each technique. Furthermore, we present an improved algorithm for computing the 4-edge-connected components of an undirected graph in linear time. The new algorithm uses only elementary data structures, and is implementable in the pointer machine model of computation.
Cite as

Loukas Georgiadis, Giuseppe F. Italiano, and Evangelos Kosinas. Computing the 4-Edge-Connected Components of a Graph: An Experimental Study. In 30th Annual European Symposium on Algorithms (ESA 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 244, pp. 60:1-60:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{georgiadis_et_al:LIPIcs.ESA.2022.60,
  author =	{Georgiadis, Loukas and Italiano, Giuseppe F. and Kosinas, Evangelos},
  title =	{{Computing the 4-Edge-Connected Components of a Graph: An Experimental Study}},
  booktitle =	{30th Annual European Symposium on Algorithms (ESA 2022)},
  pages =	{60:1--60:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-247-1},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{244},
  editor =	{Chechik, Shiri and Navarro, Gonzalo and Rotenberg, Eva and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2022.60},
  URN =		{urn:nbn:de:0030-drops-169988},
  doi =		{10.4230/LIPIcs.ESA.2022.60},
  annote =	{Keywords: Connectivity Cuts, Edge Connectivity, Graph Algorithms}
}
Document
DOI: 10.4230/LIPIcs.ESA.2021.47
Computing the 4-Edge-Connected Components of a Graph in Linear Time

Authors: Loukas Georgiadis, Giuseppe F. Italiano, and Evangelos Kosinas

Published in: LIPIcs, Volume 204, 29th Annual European Symposium on Algorithms (ESA 2021)

Abstract
We present the first linear-time algorithm that computes the 4-edge-connected components of an undirected graph. Hence, we also obtain the first linear-time algorithm for testing 4-edge connectivity. Our results are based on a linear-time algorithm that computes the 3-edge cuts of a 3-edge-connected graph G, and a linear-time procedure that, given the collection of all 3-edge cuts, partitions the vertices of G into the 4-edge-connected components.
Cite as

Loukas Georgiadis, Giuseppe F. Italiano, and Evangelos Kosinas. Computing the 4-Edge-Connected Components of a Graph in Linear Time. In 29th Annual European Symposium on Algorithms (ESA 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 204, pp. 47:1-47:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{georgiadis_et_al:LIPIcs.ESA.2021.47,
  author =	{Georgiadis, Loukas and Italiano, Giuseppe F. and Kosinas, Evangelos},
  title =	{{Computing the 4-Edge-Connected Components of a Graph in Linear Time}},
  booktitle =	{29th Annual European Symposium on Algorithms (ESA 2021)},
  pages =	{47:1--47:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-204-4},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{204},
  editor =	{Mutzel, Petra and Pagh, Rasmus and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2021.47},
  URN =		{urn:nbn:de:0030-drops-146286},
  doi =		{10.4230/LIPIcs.ESA.2021.47},
  annote =	{Keywords: Cuts, Edge Connectivity, Graph Algorithms}
}
Document
DOI: 10.4230/LIPIcs.WABI.2021.13
Compressing and Indexing Aligned Readsets

Authors: Travis Gagie, Garance Gourdel, and Giovanni Manzini

Published in: LIPIcs, Volume 201, 21st International Workshop on Algorithms in Bioinformatics (WABI 2021)

Abstract
Compressed full-text indexes are one of the main success stories of bioinformatics data structures but even they struggle to handle some DNA readsets. This may seem surprising since, at least when dealing with short reads from the same individual, the readset will be highly repetitive and, thus, highly compressible. If we are not careful, however, this advantage can be more than offset by two disadvantages: first, since most base pairs are included in at least tens reads each, the uncompressed readset is likely to be at least an order of magnitude larger than the individual’s uncompressed genome; second, these indexes usually pay some space overhead for each string they store, and the total overhead can be substantial when dealing with millions of reads. The most successful compressed full-text indexes for readsets so far are based on the Extended Burrows-Wheeler Transform (EBWT) and use a sorting heuristic to try to reduce the space overhead per read, but they still treat the reads as separate strings and thus may not take full advantage of the readset’s structure. For example, if we have already assembled an individual’s genome from the readset, then we can usually use it to compress the readset well: e.g., we store the gap-coded list of reads' starting positions; we store the list of their lengths, which is often highly compressible; and we store information about the sequencing errors, which are rare with short reads. There is nowhere, however, where we can plug an assembled genome into the EBWT. In this paper we show how to use one or more assembled or partially assembled genome as the basis for a compressed full-text index of its readset. Specifically, we build a labelled tree by taking the assembled genome as a trunk and grafting onto it the reads that align to it, at the starting positions of their alignments. Next, we compute the eXtended Burrows-Wheeler Transform (XBWT) of the resulting labelled tree and build a compressed full-text index on that. Although this index can occasionally return false positives, it is usually much more compact than the alternatives. Following the established practice for datasets with many repetitions, we compare different full-text indices by looking at the number of runs in the transformed strings. For a human Chr19 readset our preliminary experiments show that eliminating separators characters from the EBWT reduces the number of runs by 19%, from 220 million to 178 million, and using the XBWT reduces it by a further 15%, to 150 million.
Cite as

Travis Gagie, Garance Gourdel, and Giovanni Manzini. Compressing and Indexing Aligned Readsets. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 201, pp. 13:1-13:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{gagie_et_al:LIPIcs.WABI.2021.13,
  author =	{Gagie, Travis and Gourdel, Garance and Manzini, Giovanni},
  title =	{{Compressing and Indexing Aligned Readsets}},
  booktitle =	{21st International Workshop on Algorithms in Bioinformatics (WABI 2021)},
  pages =	{13:1--13:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-200-6},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{201},
  editor =	{Carbone, Alessandra and El-Kebir, Mohammed},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2021.13},
  URN =		{urn:nbn:de:0030-drops-143660},
  doi =		{10.4230/LIPIcs.WABI.2021.13},
  annote =	{Keywords: data compression, compact data structures, FM-index, Burrows-Wheeler Transform, EBWT, XBWT, DNA reads}
}
Document
DOI: 10.4230/LIPIcs.CPM.2021.16
Compressed Weighted de Bruijn Graphs

Authors: Giuseppe F. Italiano, Nicola Prezza, Blerina Sinaimeri, and Rossano Venturini

Published in: LIPIcs, Volume 191, 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021)

Abstract
We propose a new compressed representation for weighted de Bruijn graphs, which is based on the idea of delta-encoding the variations of k-mer abundances on a spanning branching of the graph. Our new data structure is likely to be of practical value: to give an idea, when combined with the compressed BOSS de Bruijn graph representation, it encodes the weighted de Bruijn graph of a 16x-covered DNA read-set (60M distinct k-mers, k = 28) within 4.15 bits per distinct k-mer and can answer abundance queries in about 60 microseconds on a standard machine. In contrast, state of the art tools declare a space usage of at least 30 bits per distinct k-mer for the same task, which is confirmed by our experiments. As a by-product of our new data structure, we exhibit efficient compressed data structures for answering partial sums on edge-weighted trees, which might be of independent interest.
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Giuseppe F. Italiano, Nicola Prezza, Blerina Sinaimeri, and Rossano Venturini. Compressed Weighted de Bruijn Graphs. In 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 191, pp. 16:1-16:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{italiano_et_al:LIPIcs.CPM.2021.16,
  author =	{Italiano, Giuseppe F. and Prezza, Nicola and Sinaimeri, Blerina and Venturini, Rossano},
  title =	{{Compressed Weighted de Bruijn Graphs}},
  booktitle =	{32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021)},
  pages =	{16:1--16:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-186-3},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{191},
  editor =	{Gawrychowski, Pawe{\l} and Starikovskaya, Tatiana},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2021.16},
  URN =		{urn:nbn:de:0030-drops-139675},
  doi =		{10.4230/LIPIcs.CPM.2021.16},
  annote =	{Keywords: weighted de Bruijn graphs, k-mer annotation, compressed data structures, partial sums}
}
Document
DOI: 10.4230/LIPIcs.SEA.2021.20
Computing Vertex-Edge Cut-Pairs and 2-Edge Cuts in Practice

Authors: Loukas Georgiadis, Konstantinos Giannis, Giuseppe F. Italiano, and Evangelos Kosinas

Published in: LIPIcs, Volume 190, 19th International Symposium on Experimental Algorithms (SEA 2021)

Abstract
We consider two problems regarding the computation of connectivity cuts in undirected graphs, namely identifying vertex-edge cut-pairs and identifying 2-edge cuts, and present an experimental study of efficient algorithms for their computation. In the first problem, we are given a biconnected graph G and our goal is to find all vertices v such that G⧵v is not 2-edge-connected, while in the second problem, we are given a 2-edge-connected graph G and our goal is to find all edges e such that G⧵e is not 2-edge-connected. These problems are motivated by the notion of twinless strong connectivity in directed graphs but are also of independent interest. Moreover, the computation of 2-edge cuts is a main step in algorithms that compute the 3-edge-connected components of a graph. In this paper, we present streamlined versions of two recent linear-time algorithms of Georgiadis and Kosinas that compute all vertex-edge cut-pairs and all 2-edge cuts, respectively. We compare the empirical performance of our vertex-edge cut-pairs algorithm with an alternative linear-time method that exploits the structure of the triconnected components of G. Also, we compare the empirical performance of our 2-edge cuts algorithm with the algorithm of Tsin, which was reported to be the fastest one among the previously existing for this problem. To that end, we conduct a thorough experimental study to highlight the merits and weaknesses of each technique.
Cite as

Loukas Georgiadis, Konstantinos Giannis, Giuseppe F. Italiano, and Evangelos Kosinas. Computing Vertex-Edge Cut-Pairs and 2-Edge Cuts in Practice. In 19th International Symposium on Experimental Algorithms (SEA 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 190, pp. 20:1-20:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{georgiadis_et_al:LIPIcs.SEA.2021.20,
  author =	{Georgiadis, Loukas and Giannis, Konstantinos and Italiano, Giuseppe F. and Kosinas, Evangelos},
  title =	{{Computing Vertex-Edge Cut-Pairs and 2-Edge Cuts in Practice}},
  booktitle =	{19th International Symposium on Experimental Algorithms (SEA 2021)},
  pages =	{20:1--20:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-185-6},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{190},
  editor =	{Coudert, David and Natale, Emanuele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2021.20},
  URN =		{urn:nbn:de:0030-drops-137920},
  doi =		{10.4230/LIPIcs.SEA.2021.20},
  annote =	{Keywords: 2-Connectivity, Graph Algorithms, Split Components}
}
Document
DOI: 10.4230/LIPIcs.ESA.2019.50
Dynamic Dominators and Low-High Orders in DAGs

Authors: Loukas Georgiadis, Konstantinos Giannis, Giuseppe F. Italiano, Aikaterini Karanasiou, and Luigi Laura

Published in: LIPIcs, Volume 144, 27th Annual European Symposium on Algorithms (ESA 2019)

Abstract
We consider practical algorithms for maintaining the dominator tree and a low-high order in directed acyclic graphs (DAGs) subject to dynamic operations. Let G be a directed graph with a distinguished start vertex s. The dominator tree D of G is a tree rooted at s, such that a vertex v is an ancestor of a vertex w if and only if all paths from s to w in G include v. The dominator tree is a central tool in program optimization and code generation, and has many applications in other diverse areas including constraint programming, circuit testing, biology, and in algorithms for graph connectivity problems. A low-high order of G is a preorder of D that certifies the correctness of D, and has further applications in connectivity and path-determination problems. We first provide a practical and carefully engineered version of a recent algorithm [ICALP 2017] for maintaining the dominator tree of a DAG through a sequence of edge deletions. The algorithm runs in O(mn) total time and O(m) space, where n is the number of vertices and m is the number of edges before any deletion. In addition, we present a new algorithm that maintains a low-high order of a DAG under edge deletions within the same bounds. Both results extend to the case of reducible graphs (a class that includes DAGs). Furthermore, we present a fully dynamic algorithm for maintaining the dominator tree of a DAG under an intermixed sequence of edge insertions and deletions. Although it does not maintain the O(mn) worst-case bound of the decremental algorithm, our experiments highlight that the fully dynamic algorithm performs very well in practice. Finally, we study the practical efficiency of all our algorithms by conducting an extensive experimental study on real-world and synthetic graphs.
Cite as

Loukas Georgiadis, Konstantinos Giannis, Giuseppe F. Italiano, Aikaterini Karanasiou, and Luigi Laura. Dynamic Dominators and Low-High Orders in DAGs. In 27th Annual European Symposium on Algorithms (ESA 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 144, pp. 50:1-50:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{georgiadis_et_al:LIPIcs.ESA.2019.50,
  author =	{Georgiadis, Loukas and Giannis, Konstantinos and Italiano, Giuseppe F. and Karanasiou, Aikaterini and Laura, Luigi},
  title =	{{Dynamic Dominators and Low-High Orders in DAGs}},
  booktitle =	{27th Annual European Symposium on Algorithms (ESA 2019)},
  pages =	{50:1--50:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-124-5},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{144},
  editor =	{Bender, Michael A. and Svensson, Ola and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2019.50},
  URN =		{urn:nbn:de:0030-drops-111715},
  doi =		{10.4230/LIPIcs.ESA.2019.50},
  annote =	{Keywords: Connectivity, dominators, low-high orders}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2019.7
Faster Algorithms for All-Pairs Bounded Min-Cuts

Authors: Amir Abboud, Loukas Georgiadis, Giuseppe F. Italiano, Robert Krauthgamer, Nikos Parotsidis, Ohad Trabelsi, Przemysław Uznański, and Daniel Wolleb-Graf

Published in: LIPIcs, Volume 132, 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)

Abstract
The All-Pairs Min-Cut problem (aka All-Pairs Max-Flow) asks to compute a minimum s-t cut (or just its value) for all pairs of vertices s,t. We study this problem in directed graphs with unit edge/vertex capacities (corresponding to edge/vertex connectivity). Our focus is on the k-bounded case, where the algorithm has to find all pairs with min-cut value less than k, and report only those. The most basic case k=1 is the Transitive Closure (TC) problem, which can be solved in graphs with n vertices and m edges in time O(mn) combinatorially, and in time O(n^{omega}) where omega<2.38 is the matrix-multiplication exponent. These time bounds are conjectured to be optimal. We present new algorithms and conditional lower bounds that advance the frontier for larger k, as follows: - A randomized algorithm for vertex capacities that runs in time {O}((nk)^{omega}). This is only a factor k^omega away from the TC bound, and nearly matches it for all k=n^{o(1)}. - Two deterministic algorithms for edge capacities (which is more general) that work in DAGs and further reports a minimum cut for each pair. The first algorithm is combinatorial (does not involve matrix multiplication) and runs in time {O}(2^{{O}(k^2)}* mn). The second algorithm can be faster on dense DAGs and runs in time {O}((k log n)^{4^{k+o(k)}}* n^{omega}). Previously, Georgiadis et al. [ICALP 2017], could match the TC bound (up to n^{o(1)} factors) only when k=2, and now our two algorithms match it for all k=o(sqrt{log n}) and k=o(log log n). - The first super-cubic lower bound of n^{omega-1-o(1)} k^2 time under the 4-Clique conjecture, which holds even in the simplest case of DAGs with unit vertex capacities. It improves on the previous (SETH-based) lower bounds even in the unbounded setting k=n. For combinatorial algorithms, our reduction implies an n^{2-o(1)} k^2 conditional lower bound. Thus, we identify new settings where the complexity of the problem is (conditionally) higher than that of TC. Our three sets of results are obtained via different techniques. The first one adapts the network coding method of Cheung, Lau, and Leung [SICOMP 2013] to vertex-capacitated digraphs. The second set exploits new insights on the structure of latest cuts together with suitable algebraic tools. The lower bounds arise from a novel reduction of a different structure than the SETH-based constructions.
Cite as

Amir Abboud, Loukas Georgiadis, Giuseppe F. Italiano, Robert Krauthgamer, Nikos Parotsidis, Ohad Trabelsi, Przemysław Uznański, and Daniel Wolleb-Graf. Faster Algorithms for All-Pairs Bounded Min-Cuts. In 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 132, pp. 7:1-7:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{abboud_et_al:LIPIcs.ICALP.2019.7,
  author =	{Abboud, Amir and Georgiadis, Loukas and Italiano, Giuseppe F. and Krauthgamer, Robert and Parotsidis, Nikos and Trabelsi, Ohad and Uzna\'{n}ski, Przemys{\l}aw and Wolleb-Graf, Daniel},
  title =	{{Faster Algorithms for All-Pairs Bounded Min-Cuts}},
  booktitle =	{46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)},
  pages =	{7:1--7:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-109-2},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{132},
  editor =	{Baier, Christel and Chatzigiannakis, Ioannis and Flocchini, Paola and Leonardi, Stefano},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2019.7},
  URN =		{urn:nbn:de:0030-drops-105833},
  doi =		{10.4230/LIPIcs.ICALP.2019.7},
  annote =	{Keywords: All-pairs min-cut, k-reachability, network coding, Directed graphs, fine-grained complexity}
}
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