24 Search Results for "Berger, Richard"

Document
DOI: 10.4230/LIPIcs.CSL.2026.22
On the Algorithmic Structure of Dialectica Realisers

Authors: Davide Barbarossa and Thomas Powell

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
Gödel’s Dialectica interpretation is a fundamental tool for the extraction of computational content from proofs, and plays a central role in today’s proof mining program. In the past decades, it has also been studied from the perspective of programming languages, and our contribution is in that direction. Specifically, we present Dialectica as a collection of rules in the style of Hoare logic, where Dialectica is now viewed as a language for specifying procedural programs that come with a forward and backward direction. This viewpoint captures the interesting dynamics of realisers extracted by the Dialectica interpretation, and we illustrate this by defining a generalised backpropagation semantics for a fragment of this language. We envisage this work as providing a base for several future developments, both theoretical and practical, which we outline at the end.
Cite as

Davide Barbarossa and Thomas Powell. On the Algorithmic Structure of Dialectica Realisers. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 22:1-22:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{barbarossa_et_al:LIPIcs.CSL.2026.22,
  author =	{Barbarossa, Davide and Powell, Thomas},
  title =	{{On the Algorithmic Structure of Dialectica Realisers}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{22:1--22:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.22},
  URN =		{urn:nbn:de:0030-drops-254466},
  doi =		{10.4230/LIPIcs.CSL.2026.22},
  annote =	{Keywords: Dialectica interpretation, Hoare logic, Programs from proofs}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.15
Extending EFX Allocations to Further Multi-Graph Classes

Authors: Umang Bhaskar and Yeshwant Pandit

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
The existence of EFX allocations is one of the most significant open questions in fair division. Recent work by Christodoulou, Fiat, Koutsoupias, and Sgouritsa ("Fair allocation in graphs," EC 2023) establishes the existence of EFX allocations for graphical valuations, when agents are vertices in a graph, items are edges, and each item has zero value for all agents other than those at its endpoints. Thus, in this setting, each good has non-zero value for at most two agents, and there is at most one good valued by any pair of agents. This marks one of the few cases when an exact and complete EFX allocation is known to exist for more than three agents. In this work, we partially extend these results to multi-graphs, when each pair of vertices can have more than one edge between them. The existence of EFX allocations in multi-graphs is a natural open question given their existence in simple graphs. We show that EFX allocations exist, and can be computed in polynomial time, for agents with cancelable valuations in the following cases: (i) bipartite multi-graphs, (ii) multi-trees with monotone valuations, and (iii) multi-graphs with girth (2t-1), where t is the chromatic number of the multi-graph. The existence of EFX in cycle multi-graphs follows from (i), (iii), and the known existence of EFX for three agents.
Cite as

Umang Bhaskar and Yeshwant Pandit. Extending EFX Allocations to Further Multi-Graph Classes. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 15:1-15:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bhaskar_et_al:LIPIcs.FSTTCS.2025.15,
  author =	{Bhaskar, Umang and Pandit, Yeshwant},
  title =	{{Extending EFX Allocations to Further Multi-Graph Classes}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{15:1--15:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.15},
  URN =		{urn:nbn:de:0030-drops-250958},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.15},
  annote =	{Keywords: Fair Division, EFX, Multi-graphs}
}
Document
Invited Paper
DOI: 10.4230/OASIcs.RW.2024/2025.7
Modern Datalog: Concepts, Methods, Applications (Invited Paper)

Authors: Markus Krötzsch

Published in: OASIcs, Volume 138, Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025)

Abstract
Pure Datalog is arguably the most fundamental rule language, elegant and simple, but also often too limited to be useful in practice. This has motivated the introduction of many new expressive features, ranging from datatypes and related functions, over aggregates and semi-ring generalisations, to existential quantifiers and complex terms. In spite of their variety, all these approaches remain true to the nature of Datalog as a direct, pattern-based way of computing on structured data. We therefore find that a modern notion of Datalog is emerging, distinctly different from other approaches of logic programming and with its own set of related methods and applications. In this course, we introduce Datalog and its most common extensions, and explain when and how these features can be used together (which is often, but not always, safe to do). We further look at modern Datalog systems and some of their primary use cases. Hands-on work with Datalog and its extensions is done with the free Datalog engine https://knowsys.github.io/nemo-doc/. The course is accessible to all audiences and does not assume specific prior knowledge.
Cite as

Markus Krötzsch. Modern Datalog: Concepts, Methods, Applications (Invited Paper). In Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025). Open Access Series in Informatics (OASIcs), Volume 138, pp. 7:1-7:41, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{krotzsch:OASIcs.RW.2024/2025.7,
  author =	{Kr\"{o}tzsch, Markus},
  title =	{{Modern Datalog: Concepts, Methods, Applications}},
  booktitle =	{Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 \& RW 2025)},
  pages =	{7:1--7:41},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-405-5},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{138},
  editor =	{Artale, Alessandro and Bienvenu, Meghyn and Garc{\'\i}a, Yazm{\'\i}n Ib\'{a}\~{n}ez and Murlak, Filip},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.RW.2024/2025.7},
  URN =		{urn:nbn:de:0030-drops-250524},
  doi =		{10.4230/OASIcs.RW.2024/2025.7},
  annote =	{Keywords: Datalog, query language, knowlegde representation and reasoning, logic programming, Horn logic, SPARQL, datatypes and aggregation, lecture notes, tutorial}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.15
Parameterized Complexity of Directed Traveling Salesman Problem

Authors: Václav Blažej, Andreas Emil Feldmann, Foivos Fioravantes, Paweł Rzążewski, and Ondřej Suchý

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
The Directed Traveling Salesman Problem (DTSP) is a variant of the classical Traveling Salesman Problem in which the edges in the graph are directed and a vertex and edge can be visited multiple times. The goal is to find a directed closed walk of minimum length (or total weight) that visits every vertex of the given graph at least once. In a yet more general version, Directed Waypoint Routing Problem (DWRP), some vertices are marked as terminals and we are only required to visit all terminals. Furthermore, each edge has its capacity bounding the number of times this edge can be used by a solution. While both problems (and many other variants of TSP) were extensively investigated, mostly from the approximation point of view, there are surprisingly few results concerning the parameterized complexity. Our starting point is the result of Marx et al. [APPROX/RANDOM 2016] who proved that DTSP is W[1]-hard parameterized by distance to pathwidth 3. In this paper we aim to initiate the systematic complexity study of variants of Directed Traveling Salesman Problem with respect to various, mostly structural, parameters. We show that DWRP is FPT parameterized by the solution size, the feedback edge number and the vertex integrity of the underlying undirected graph. Furthermore, the problem is XP parameterized by treewidth. On the complexity side, we show that the problem is W[1]-hard parameterized by the distance to constant treedepth.
Cite as

Václav Blažej, Andreas Emil Feldmann, Foivos Fioravantes, Paweł Rzążewski, and Ondřej Suchý. Parameterized Complexity of Directed Traveling Salesman Problem. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 15:1-15:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{blazej_et_al:LIPIcs.ISAAC.2025.15,
  author =	{Bla\v{z}ej, V\'{a}clav and Feldmann, Andreas Emil and Fioravantes, Foivos and Rz\k{a}\.{z}ewski, Pawe{\l} and Such\'{y}, Ond\v{r}ej},
  title =	{{Parameterized Complexity of Directed Traveling Salesman Problem}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{15:1--15:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.15},
  URN =		{urn:nbn:de:0030-drops-249231},
  doi =		{10.4230/LIPIcs.ISAAC.2025.15},
  annote =	{Keywords: Directed TSP, parameterized complexity, vertex integrity, treedepth}
}
Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.33
Digital Health for Space: Towards Prevention, Training, Empowerment, and Autonomy

Authors: Mario A. Cypko, Ulrich Straube, Russell J. Andrews, and Oliver Amft

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
Future long-duration and deep-space missions will rely on digital health technologies to ensure the health and safety of the crew, as well as to enable the required mission autonomy. This position paper redefines the current paradigms of digital health by emphasizing prevention, self-management, and individual empowerment for health as central challenges for both space and terrestrial medicine. We focus on future mission scenarios and highlight the potential of co-evolving digital health and related technologies, particularly sensing, artificial intelligence (AI), and human-computer interaction (HCI), across the continuum of space medicine: from astronaut selection and training to prevention, diagnostics, therapy, rehabilitation, and long-term care. Future digital health technologies can respond to pressing needs arising from limited medical infrastructure, rising care costs, and increasing demands on healthcare systems in space and on Earth. To structure research and development needs, we introduce a framework with four autonomy levels based on mission distance and communication latency (Earth orbit, Lunar Gateway and Moon vicinity, Mars, and deep space) that illustrate how mission context constrains medical support and dictates system requirements. Using the Lunar Orbital Platform-Gateway as a near-future reference, we discuss how growing communication delays demand greater onboard autonomy and new telemedical strategies. Within the proposed framework, we integrate solutions built around AI-supported decision making, multimodal monitoring, and adaptive HCI, which should be co-designed through human-centered methods to form a cohesive health management ecosystem. The framework opens up synergies for proactive and trustworthy health support under isolation and limited ground contact. The paper consolidates current technological readiness and strategic challenges, offering guidance for space health research and policy, with clear translational benefits for terrestrial care delivery.
Cite as

Mario A. Cypko, Ulrich Straube, Russell J. Andrews, and Oliver Amft. Digital Health for Space: Towards Prevention, Training, Empowerment, and Autonomy. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 33:1-33:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cypko_et_al:OASIcs.SpaceCHI.2025.33,
  author =	{Cypko, Mario A. and Straube, Ulrich and Andrews, Russell J. and Amft, Oliver},
  title =	{{Digital Health for Space: Towards Prevention, Training, Empowerment, and Autonomy}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{33:1--33:12},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.33},
  URN =		{urn:nbn:de:0030-drops-240236},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.33},
  annote =	{Keywords: Digital Health in Space, AI-based Decision Support, Wearable Health Monitoring, Human-Computer Interaction (HCI), Autonomous Medical Systems}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.30
Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs

Authors: Zhangsong Li

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
In this paper, assuming a natural strengthening of the low-degree conjecture, we provide evidence of computational hardness for two problems: (1) the (partial) matching recovery problem in the sparse correlated Erdős-Rényi graphs G(n,q;ρ) when the edge-density q = n^{-1+o(1)} and the correlation ρ < √{α} lies below the Otter’s threshold, this resolves a remaining problem in [Jian Ding et al., 2023]; (2) the detection problem between a pair of correlated sparse stochastic block model S(n,λ/n;k,ε;s) and a pair of independent stochastic block models S(n,λs/n;k,ε) when ε² λ s < 1 lies below the Kesten-Stigum (KS) threshold and s < √α lies below the Otter’s threshold, this resolves a remaining problem in [Guanyi Chen et al., 2024]. One of the main ingredient in our proof is to derive certain forms of algorithmic contiguity between two probability measures based on bounds on their low-degree advantage. To be more precise, consider the high-dimensional hypothesis testing problem between two probability measures ℙ and ℚ based on the sample Y. We show that if the low-degree advantage Adv_{≤D}(dℙ/dℚ) = O(1), then (assuming the low-degree conjecture) there is no efficient algorithm A such that ℚ(A(Y) = 0) = 1-o(1) and ℙ(A(Y) = 1) = Ω(1). This framework provides a useful tool for performing reductions between different inference tasks.
Cite as

Zhangsong Li. Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 30:1-30:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{li:LIPIcs.APPROX/RANDOM.2025.30,
  author =	{Li, Zhangsong},
  title =	{{Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{30:1--30:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.30},
  URN =		{urn:nbn:de:0030-drops-243965},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.30},
  annote =	{Keywords: Algorithmic Contiguity, Low-degree Conjecture, Correlated Random Graphs}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.11
Mutational Signature Refitting on Sparse Pan-Cancer Data

Authors: Gal Gilad, Teresa M. Przytycka, and Roded Sharan

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Mutational processes shape cancer genomes, leaving characteristic marks that are termed signatures. The level of activity of each such process, or its signature exposure, provides important information on the disease, improving patient stratification and the prediction of drug response. Thus, there is growing interest in developing refitting methods that decipher those exposures. Previous work in this domain was unsupervised in nature, employing algebraic decomposition and probabilistic inference methods. Here we provide a supervised approach to the problem of signature refitting and show its superiority over current methods. Our method, SuRe, leverages a neural network model to capture correlations between signature exposures in real data. We show that SuRe outperforms previous methods on sparse mutation data from tumor type specific data sets, as well as pan-cancer data sets, with an increasing advantage as the data become sparser. We further demonstrate its utility in clinical settings.
Cite as

Gal Gilad, Teresa M. Przytycka, and Roded Sharan. Mutational Signature Refitting on Sparse Pan-Cancer Data. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 11:1-11:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gilad_et_al:LIPIcs.WABI.2025.11,
  author =	{Gilad, Gal and Przytycka, Teresa M. and Sharan, Roded},
  title =	{{Mutational Signature Refitting on Sparse Pan-Cancer Data}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{11:1--11:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.11},
  URN =		{urn:nbn:de:0030-drops-239374},
  doi =		{10.4230/LIPIcs.WABI.2025.11},
  annote =	{Keywords: mutational signatures, signature refitting, cancer genomics, genomic data analysis, somatic mutations}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.20
SimdMinimizers: Computing Random Minimizers, fast

Authors: Ragnar Groot Koerkamp and Igor Martayan

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
Motivation. Because of the rapidly-growing amount of sequencing data, computing sketches of large textual datasets has become an essential preprocessing task. These sketches are typically much smaller than the input sequences, but preserve sufficient information for downstream analysis. Minimizers are an especially popular sketching technique and used in a wide variety of applications. They sample at least one out of every w consecutive k-mers. As DNA sequencers are getting more accurate, some applications can afford to use a larger w and hence sparser and smaller sketches. And as sketches get smaller, their analysis becomes faster, so the time spent sketching the full-sized input becomes more of a bottleneck. Methods. Our library simd-minimizers implements a random minimizer algorithm using SIMD instructions. It supports both AVX2 and NEON architectures. Its main novelty is two-fold. First, it splits the input into 8 chunks that are streamed over in parallel through all steps of the algorithm. This is enabled by using the completely deterministic two-stacks sliding window minimum algorithm, which seems not to have been used before for finding minimizers. Results. Our library is up to 6.8× faster than a scalar implementation of the rescan method when w = 5 is small, and 3.4× faster for larger w = 19. Computing canonical minimizers is less than 50% slower than computing forward minimizers, and over 15× faster than the existing implementation in the minimizer-iter crate. Our library finds all (canonical) minimizers of a 3.2 Gbp human genome in 5.2 (resp. 6.7) seconds.
Cite as

Ragnar Groot Koerkamp and Igor Martayan. SimdMinimizers: Computing Random Minimizers, fast. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 20:1-20:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{grootkoerkamp_et_al:LIPIcs.SEA.2025.20,
  author =	{Groot Koerkamp, Ragnar and Martayan, Igor},
  title =	{{SimdMinimizers: Computing Random Minimizers, fast}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{20:1--20:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.20},
  URN =		{urn:nbn:de:0030-drops-232581},
  doi =		{10.4230/LIPIcs.SEA.2025.20},
  annote =	{Keywords: Minimizers, Randomized algorithms, Sketching, Hashing}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.1
Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory

Authors: Ylène Aboulfath, Dominique Barth, Thierry Mautor, Dimitri Watel, and Marc-Antoine Weisser

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
Molecular dynamics analysis is a fundamental topic in chemistry, in particular the study of the formation and dissolution of hydrogen bonds over time. The dynamics of these bonds create and break cycles which are crucial to the structure of the molecules. The challenge in cycle analysis is twofold: there is an exponential number of cycles, and some cycles are very close. We introduce a graph-based approach using minimum cycle bases to assist in molecular dynamics analysis. Given a set of graphs representing a molecule trajectory, we determine, for each graph, a minimum cycle basis and construct a graph of cycles which represents the cycles of minimum bases and their interactions. Then, we aggregate all information from these graphs of cycles into a polygraph. Each vertex of the polygraph represents a class of cycles appearing in different minimum bases and playing equivalent roles in the trajectory. This paper introduces our approach, establishes the complexity of associated problems, and suggests an implementation. Simulations are conducted on both real and generated data to evaluate the performance of our approach.
Cite as

Ylène Aboulfath, Dominique Barth, Thierry Mautor, Dimitri Watel, and Marc-Antoine Weisser. Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 1:1-1:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{aboulfath_et_al:LIPIcs.SEA.2025.1,
  author =	{Aboulfath, Yl\`{e}ne and Barth, Dominique and Mautor, Thierry and Watel, Dimitri and Weisser, Marc-Antoine},
  title =	{{Polymorphic Cycle Basis in a Sequence of Graphs to Analyze the Structural Evolution of a Molecular Dynamic Trajectory}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{1:1--1:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.1},
  URN =		{urn:nbn:de:0030-drops-232399},
  doi =		{10.4230/LIPIcs.SEA.2025.1},
  annote =	{Keywords: Graph theory, Cycle basis, Molecular analysis}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.3
Enabling Containerisation of Distributed Applications with Real-Time Constraints

Authors: Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Containerisation is becoming a cornerstone of modern distributed systems, thanks to their lightweight virtualisation, high portability, and seamless integration with orchestration tools such as Kubernetes. The usage of containers has also gained traction in real-time cyber-physical systems, such as software-defined vehicles, which are characterised by strict timing requirements to ensure safety and performance. Nevertheless, ensuring real-time execution of co-located containers is challenging because of mutual interference due to the sharing of the same processing hardware. Existing parallel computing frameworks such as Ray and its Kubernetes-enabled variant, KubeRay, excel in distributed computation but lack support for scheduling policies that allow guaranteeing real-time timing constraints and CPU resource isolation between containers, such as the SCHED_DEADLINE policy of Linux. To fill this gap, this paper extends Ray to support real-time containers that leverage SCHED_DEADLINE. To this end, we propose KubeDeadline, a novel, modular Kubernetes extension to support SCHED_DEADLINE. We evaluate our approach through extensive experiments, using synthetic workloads and a case study based on the MobileNet and EfficientNet deep neural networks. Our evaluation shows that KubeDeadline ensures deadline compliance in all synthetic workloads, adds minimal deployment overhead (in the order of milliseconds), and achieves lower worst-case response times, up to 4 times lower, than vanilla Kubernetes under background interference.
Cite as

Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi. Enabling Containerisation of Distributed Applications with Real-Time Constraints. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 3:1-3:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{samimi_et_al:LIPIcs.ECRTS.2025.3,
  author =	{Samimi, Nasim and Abeni, Luca and Casini, Daniel and Marinoni, Mauro and Basten, Twan and Nasri, Mitra and Geilen, Marc and Biondi, Alessandro},
  title =	{{Enabling Containerisation of Distributed Applications with Real-Time Constraints}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{3:1--3:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.3},
  URN =		{urn:nbn:de:0030-drops-235816},
  doi =		{10.4230/LIPIcs.ECRTS.2025.3},
  annote =	{Keywords: Kubernetes, real-time containers, SCHED\underlineDEADLINE, KubeRay}
}
Document
DOI: 10.4230/LIPIcs.FSCD.2025.12
Ohana Trees and Taylor Expansion for the λI-Calculus: No variable gets left behind or forgotten!

Authors: Rémy Cerda, Giulio Manzonetto, and Alexis Saurin

Published in: LIPIcs, Volume 337, 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)

Abstract
Although the λI-calculus is a natural fragment of the λ-calculus, obtained by forbidding the erasure, its equational theories did not receive much attention. The reason is that all proper denotational models studied in the literature equate all non-normalizable λI-terms, whence the associated theory is not very informative. The goal of this paper is to introduce a previously unknown theory of the λI-calculus, induced by a notion of evaluation trees that we call "Ohana trees". The Ohana tree of a λI-term is an annotated version of its Böhm tree, remembering all free variables that are hidden within its meaningless subtrees, or pushed into infinity along its infinite branches. We develop the associated theories of program approximation: the first approach - more classic - is based on finite trees and continuity, the second adapts Ehrhard and Regnier’s Taylor expansion. We then prove a Commutation Theorem stating that the normal form of the Taylor expansion of a λI-term coincides with the Taylor expansion of its Ohana tree. As a corollary, we obtain that the equality induced by Ohana trees is compatible with abstraction and application. We conclude by discussing the cases of Lévy-Longo and Berarducci trees, and generalizations to the full λ-calculus.
Cite as

Rémy Cerda, Giulio Manzonetto, and Alexis Saurin. Ohana Trees and Taylor Expansion for the λI-Calculus: No variable gets left behind or forgotten!. In 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 337, pp. 12:1-12:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cerda_et_al:LIPIcs.FSCD.2025.12,
  author =	{Cerda, R\'{e}my and Manzonetto, Giulio and Saurin, Alexis},
  title =	{{Ohana Trees and Taylor Expansion for the \lambdaI-Calculus: No variable gets left behind or forgotten!}},
  booktitle =	{10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)},
  pages =	{12:1--12:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-374-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{337},
  editor =	{Fern\'{a}ndez, Maribel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2025.12},
  URN =		{urn:nbn:de:0030-drops-236277},
  doi =		{10.4230/LIPIcs.FSCD.2025.12},
  annote =	{Keywords: \lambda-calculus, program approximation, Taylor expansion, \lambdaI-calculus, persistent free variables, B\"{o}hm trees, Ohana trees}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2025.138
Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs

Authors: Michal Ajdarów, James C. A. Main, Petr Novotný, and Mickael Randour

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Markov decision processes (MDPs) are a canonical model to reason about decision making within a stochastic environment. We study a fundamental class of infinite MDPs: one-counter MDPs (OC-MDPs). They extend finite MDPs via an associated counter taking natural values, thus inducing an infinite MDP over the set of configurations (current state and counter value). We consider two characteristic objectives: reaching a target state (state-reachability), and reaching a target state with counter value zero (selective termination). The synthesis problem for the latter is not known to be decidable and connected to major open problems in number theory. Furthermore, even seemingly simple strategies (e.g., memoryless ones) in OC-MDPs might be impossible to build in practice (due to the underlying infinite configuration space): we need finite, and preferably small, representations. To overcome these obstacles, we introduce two natural classes of concisely represented strategies based on a (possibly infinite) partition of counter values in intervals. For both classes, and both objectives, we study the verification problem (does a given strategy ensure a high enough probability for the objective?), and two synthesis problems (does there exist such a strategy?): one where the interval partition is fixed as input, and one where it is only parameterized. We develop a generic approach based on a compression of the induced infinite MDP that yields decidability in all cases, with all complexities within PSPACE.
Cite as

Michal Ajdarów, James C. A. Main, Petr Novotný, and Mickael Randour. Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 138:1-138:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ajdarow_et_al:LIPIcs.ICALP.2025.138,
  author =	{Ajdar\'{o}w, Michal and Main, James C. A. and Novotn\'{y}, Petr and Randour, Mickael},
  title =	{{Taming Infinity One Chunk at a Time: Concisely Represented Strategies in One-Counter MDPs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{138:1--138:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.138},
  URN =		{urn:nbn:de:0030-drops-235157},
  doi =		{10.4230/LIPIcs.ICALP.2025.138},
  annote =	{Keywords: one-counter Markov decision processes, randomised strategies, termination, reachability}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.112
Parameterized Algorithms for Matching Integer Programs with Additional Rows and Columns

Authors: Alexandra Lassota and Koen Ligthart

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We study integer linear programs (ILP) of the form min{c^⊤ x | Ax = b,l ≤ x ≤ u,x ∈ ℤⁿ} and analyze their parameterized complexity with respect to their distance to the generalized matching problem, following the well-established approach of capturing the hardness of a problem by the distance to triviality. The generalized matching problem is an ILP where each column of the constraint matrix has 1-norm of at most 2. It captures several well-known polynomial time solvable problems such as matching and flow problems. We parameterize by the size of variable and constraint backdoors, which measure the least number of columns or rows that must be deleted to obtain a generalized matching ILP. This extends generalized matching problems by allowing a parameterized number of additional arbitrary variables or constraints, yielding a novel parameter. We present the following results: (i) a fixed-parameter tractable (FPT) algorithm for ILPs parameterized by the size p of a minimum variable backdoor to generalized matching; (ii) a randomized slice-wise polynomial (XP) time algorithm for ILPs parameterized by the size h of a minimum constraint backdoor to generalized matching as long as c and A are encoded in unary; (iii) we complement (ii) by proving that solving an ILP is W[1]-hard when parameterized by h even when c,A,l,u have coefficients of constant size. To obtain (i), we prove a variant of lattice-convexity of the degree sequences of weighted b-matchings, which we study in the light of SBO jump M-convex functions. This allows us to model the matching part as a polyhedral constraint on the integer backdoor variables. The resulting ILP is solved in FPT time using an integer programming algorithm. For (ii), the randomized XP time algorithm is obtained by pseudo-polynomially reducing the problem to the exact matching problem. To prevent an exponential blowup in terms of the encoding length of b, we bound the Graver complexity of the constraint matrix and employ a Graver augmentation local search framework. The hardness result (iii) is obtained through a parameterized reduction from ILP with h constraints and coefficients encoded in unary.
Cite as

Alexandra Lassota and Koen Ligthart. Parameterized Algorithms for Matching Integer Programs with Additional Rows and Columns. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 112:1-112:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lassota_et_al:LIPIcs.ICALP.2025.112,
  author =	{Lassota, Alexandra and Ligthart, Koen},
  title =	{{Parameterized Algorithms for Matching Integer Programs with Additional Rows and Columns}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{112:1--112:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.112},
  URN =		{urn:nbn:de:0030-drops-234895},
  doi =		{10.4230/LIPIcs.ICALP.2025.112},
  annote =	{Keywords: Integer Programming, fixed-parameter Tractability, polyhedral Optimization, Matchings}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.35
Near-Optimal Directed Low-Diameter Decompositions

Authors: Karl Bringmann, Nick Fischer, Bernhard Haeupler, and Rustam Latypov

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Low Diameter Decompositions (LDDs) are invaluable tools in the design of combinatorial graph algorithms. While historically they have been applied mainly to undirected graphs, in the recent breakthrough for the negative-length Single Source Shortest Path problem, Bernstein, Nanongkai, and Wulff-Nilsen [FOCS '22] extended the use of LDDs to directed graphs for the first time. Specifically, their LDD deletes each edge with probability at most O(1/D ⋅ log²n), while ensuring that each strongly connected component in the remaining graph has a (weak) diameter of at most D. In this work, we make further advancements in the study of directed LDDs. We reveal a natural and intuitive (in hindsight) connection to Expander Decompositions, and leveraging this connection along with additional techniques, we establish the existence of an LDD with an edge-cutting probability of O(1/D ⋅ log n log log n). This improves the previous bound by nearly a logarithmic factor and closely approaches the lower bound of Ω(1/D ⋅ log n). With significantly more technical effort, we also develop two efficient algorithms for computing our LDDs: a deterministic algorithm that runs in time Õ(m poly(D)) and a randomized algorithm that runs in near-linear time Õ(m). We believe that our work provides a solid conceptual and technical foundation for future research relying on directed LDDs, which will undoubtedly follow soon.
Cite as

Karl Bringmann, Nick Fischer, Bernhard Haeupler, and Rustam Latypov. Near-Optimal Directed Low-Diameter Decompositions. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 35:1-35:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bringmann_et_al:LIPIcs.ICALP.2025.35,
  author =	{Bringmann, Karl and Fischer, Nick and Haeupler, Bernhard and Latypov, Rustam},
  title =	{{Near-Optimal Directed Low-Diameter Decompositions}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{35:1--35:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.35},
  URN =		{urn:nbn:de:0030-drops-234125},
  doi =		{10.4230/LIPIcs.ICALP.2025.35},
  annote =	{Keywords: Low Diameter Decompositions, Expander Decompositions, Directed Graphs}
}
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