33 Search Results for "Gál, Anna"


Document
Separations Above TFNP from Sherali-Adams Lower Bounds

Authors: Noah Fleming, Anna Gál, Deniz Imrek, and Christophe Marciot

Published in: LIPIcs, Volume 383, 41st Computational Complexity Conference (CCC 2026)


Abstract
Unlike in TFNP, for which there is an abundance of problems capturing natural existence principles which are incomparable (in the black-box setting), Kleinberg et al. [Robert Kleinberg et al., 2021] observed that many of the natural problems considered so far in the second level of the total function polynomial hierarchy (TFΣ₂) reduce to the Strong Avoid problem. In this work, we prove that the Linear Ordering Principle does not reduce to Strong Avoid in the black-box setting, exhibiting the first TFΣ₂ problem that lies outside of the class of problems reducible to Strong Avoid. The proof of our separation exploits a connection between total search problems in the polynomial hierarchy and proof complexity, recently developed by Fleming, Imrek, and Marciot [Fleming et al., 2025]. In particular, this implies that to show our separation, it suffices to show that there is no small proof of the Linear Ordering Principle in a Σ₂-variant of the Sherali-Adams proof system. To do so, we extend the classical pseudo-expectation method to the Σ₂ setting, showing that the existence of a Σ₂ pseudo-expectation precludes a Σ₂ Sherali-Adams proof. The main technical challenge is in proving the existence of such a pseudo-expectation, we manage to do so by solving a combinatorial covering problem about permutations. We also show that the extended pseudo-expectation bound implies that the Linear Ordering Principle cannot be reduced to any problem admitting a low-degree Sherali-Adams refutation.

Cite as

Noah Fleming, Anna Gál, Deniz Imrek, and Christophe Marciot. Separations Above TFNP from Sherali-Adams Lower Bounds. In 41st Computational Complexity Conference (CCC 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 383, pp. 37:1-37:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{fleming_et_al:LIPIcs.CCC.2026.37,
  author =	{Fleming, Noah and G\'{a}l, Anna and Imrek, Deniz and Marciot, Christophe},
  title =	{{Separations Above TFNP from Sherali-Adams Lower Bounds}},
  booktitle =	{41st Computational Complexity Conference (CCC 2026)},
  pages =	{37:1--37:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-437-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{383},
  editor =	{Moshkovitz, Dana},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2026.37},
  URN =		{urn:nbn:de:0030-drops-270797},
  doi =		{10.4230/LIPIcs.CCC.2026.37},
  annote =	{Keywords: TFNP, Range Avoidance, Linear Ordering Principle, Separation, Sherali-Adams, Pseudo-Expectation}
}
Document
From Relative Compression to Hierarchical Compression

Authors: Philip Bille, Inge Li Gørtz, and Máximo Pérez-López

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)


Abstract
We introduce a framework to use any relative compression algorithm as a subroutine for hierarchical relative compression. In a dataset consisting of n sequences, it consists of constructing a rooted tree on the sequences, using hashing and similarity techniques, and compressing the children of a node relative to their parent. We build up on previous techniques [Bille et al., 2023], and optimize them further for computational efficiency. We test our framework with three existing relative compression algorithms on six genomic datasets, and we show that in datasets that contain heterogeneous data, hierarchical relative compression improves the compression ratio by a factor 2 or more, when compared to relative compression to a single sequence. Apart from compression ratio, we also explore the trade-offs with respect to compression speed, dataset decompression speed, and average sequence decompression speed. With two of the surveyed algorithms, dataset decompression becomes faster and sequence decompression remains practical, at the cost of compression time, which remains competitive for the datasets with highest variability.

Cite as

Philip Bille, Inge Li Gørtz, and Máximo Pérez-López. From Relative Compression to Hierarchical Compression. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 7:1-7:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{bille_et_al:LIPIcs.SEA.2026.7,
  author =	{Bille, Philip and G{\o}rtz, Inge Li and P\'{e}rez-L\'{o}pez, M\'{a}ximo},
  title =	{{From Relative Compression to Hierarchical Compression}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{7:1--7:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.7},
  URN =		{urn:nbn:de:0030-drops-260117},
  doi =		{10.4230/LIPIcs.SEA.2026.7},
  annote =	{Keywords: Relative compression, RLZ, string collections, compressed representation, data structures, efficient algorithms}
}
Document
Locality Sensitive Hashing in Hyperbolic Space

Authors: Chengyuan Deng, Jie Gao, Kevin Lu, Feng Luo, and Cheng Xin

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)


Abstract
For a metric space (X, d), a family ℋ of locality sensitive hash functions is called (r, cr, p₁, p₂) sensitive if a randomly chosen function h ∈ ℋ has probability at least p₁ (at most p₂) to map any a, b ∈ X in the same hash bucket if d(a, b) ≤ r (or d(a, b) ≥ cr). Locality Sensitive Hashing (LSH) is one of the most popular techniques for approximate nearest-neighbor search in high-dimensional spaces, and has been studied extensively for Hamming, Euclidean, and spherical geometries. An (r, cr, p₁, p₂)-sensitive hash function enables approximate nearest neighbor search (i.e., returning a point within distance cr from a query q if there exists a point within distance r from q) with space O(n^{1+ρ}) and query time O(n^ρ) where ρ = (log 1/p₁)/(log 1/p₂). But LSH for hyperbolic spaces ℍ^d remains largely unexplored. In this work, we present the first LSH construction native to hyperbolic space. For the hyperbolic plane (d = 2), we show a construction achieving ρ ≤ 1/c, based on the hyperplane rounding scheme. For general hyperbolic spaces (d ≥ 3), we use dimension reduction from ℍ^d to ℍ² and the 2D hyperbolic LSH to get ρ ≤ 1.59/c. On the lower bound side, we show that the lower bound on ρ of Euclidean LSH extends to the hyperbolic setting via local isometry, therefore giving ρ ≥ 1/c².

Cite as

Chengyuan Deng, Jie Gao, Kevin Lu, Feng Luo, and Cheng Xin. Locality Sensitive Hashing in Hyperbolic Space. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 39:1-39:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{deng_et_al:LIPIcs.SoCG.2026.39,
  author =	{Deng, Chengyuan and Gao, Jie and Lu, Kevin and Luo, Feng and Xin, Cheng},
  title =	{{Locality Sensitive Hashing in Hyperbolic Space}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{39:1--39:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.39},
  URN =		{urn:nbn:de:0030-drops-258454},
  doi =		{10.4230/LIPIcs.SoCG.2026.39},
  annote =	{Keywords: Locality Sensitive Hashing, Hyperbolic Geometry, Dimension Reduction, Approximate Nearest Neighbor Search}
}
Document
Survey
Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support

Authors: Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1


Abstract
Our culture, history and world are in constant motion, continuously shaped by the flow of time, evolving narratives, and shifting relationships. Capturing this temporal complexity within cultural heritage (CH) knowledge graphs is essential for preserving the dynamic nature of human heritage. However, standard RDF predicates fail to effectively model the temporal aspects of cultural data, such as changing facts, evolving relationships, and temporal concepts. Over the past two decades, a variety of RDF-based approaches have been proposed to address this limitation, yet guidance is missing on which method best suits specific CH contexts. This paper presents a systematic evaluation of temporal RDF modelling approaches from a CH perspective. Based on an analysis of real-world CH use cases, core temporal requirements are identified that reflect both modelling expressivity and practical concerns. Six prominent approaches - RDF*, tRDF, Named Graphs, Singleton Property, N-ary Relations, and 4D Fluents - are assessed across these requirements. Our findings reveal that no single solution fits all scenarios, but suitable approaches can be selected based on project-specific priorities. To support practitioners, a decision-support tool is introduced to guide them in selecting the most suitable extension for their specific needs. This work provides practical guidance for CH modelling and contributes to the broader development of temporally aware Linked Data.

Cite as

Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack. Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 2:1-2:46, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@Article{bruns_et_al:TGDK.4.1.2,
  author =	{Bruns, Oleksandra and Waitelonis, J\"{o}rg and Pan, Jeff Z. and Sack, Harald},
  title =	{{Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:46},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.2},
  URN =		{urn:nbn:de:0030-drops-256871},
  doi =		{10.4230/TGDK.4.1.2},
  annote =	{Keywords: Temporal Data Representation, RDF Extensions, Cultural Heritage, Knowledge Graphs}
}
Document
Range Longest Increasing Subsequence and Its Relatives

Authors: Karthik C. S. and Saladi Rahul

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)


Abstract
Longest increasing subsequence (LIS) is a classical textbook problem which is still actively studied in various computational models. In this work, we present a few results for the range longest increasing subsequence problem (Range-LIS) and its variants. The input to Range-LIS is a sequence 𝒮 of n real numbers and a collection 𝒬 of m query ranges and for each query in 𝒬, the goal is to report the LIS of the sequence 𝒮 restricted to that query. Our two main results are for the following generalizations of the Range-LIS problem: 2D Range Queries: In this variant of the Range-LIS problem, each query is a pair of ranges, one of indices and the other of values, and we provide a randomized algorithm with running time Õ(mn^{1/2}+ n^{3/2})+O(k), where k is the cumulative length of the m output subsequences. This improves on the elementary Õ(mn) runtime algorithm when m = Ω(√n). Previously, the only known result breaking the quadratic barrier was of Tiskin [SODA'10] which could only handle 1D range queries (i.e., each query was a range of indices) and also just outputted the length of the LIS (instead of reporting the subsequence achieving that length). Subsequent to our paper, Gawrychowski, Gorbachev, and Kociumaka in a preprint have extended Tiskin’s approach to handle reporting 1D range queries in O(n(log n)³+m+k) time. Colored Sequences: In this variant of the Range-LIS problem, each element in 𝒮 is colored and for each query in 𝒬, the goal is to report a monochromatic LIS contained in the sequence 𝒮 restricted to that query. For 2D queries, we provide a randomized algorithm for this colored version with running time Õ(mn^{2/3}+ n^{5/3})+O(k). Moreover, for 1D queries, we provide an improved algorithm with running time Õ(mn^{1/2}+ n^{3/2})+O(k). Thus, we again improve on the elementary Õ(mn) runtime algorithm. Additionally, we prove that assuming the well-known Combinatorial Boolean Matrix Multiplication Hypothesis, that the runtime for 1D queries is essentially tight for combinatorial algorithms. Our algorithms combine several tools such as dynamic programming (to precompute increasing subsequences with some desirable properties), geometric data structures (to efficiently compute the dynamic programming entries), random sampling (to capture elements which are part of the LIS), classification of query ranges into large LIS and small LIS, and classification of colors into light and heavy. We believe that our techniques will be of interest to tackle other variants of LIS problem and other range-searching problems.

Cite as

Karthik C. S. and Saladi Rahul. Range Longest Increasing Subsequence and Its Relatives. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 87:1-87:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{karthikc.s._et_al:LIPIcs.ITCS.2026.87,
  author =	{Karthik C. S. and Rahul, Saladi},
  title =	{{Range Longest Increasing Subsequence and Its Relatives}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{87:1--87:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.87},
  URN =		{urn:nbn:de:0030-drops-253740},
  doi =		{10.4230/LIPIcs.ITCS.2026.87},
  annote =	{Keywords: Longest Increasing Subsequence, Range Query, Fine-Grained Complexity}
}
Document
Optimal White-Box Adversarial Streaming Lower Bounds for Approximating LIS Length

Authors: Anna Gal, Gillat Kol, Raghuvansh R. Saxena, and Huacheng Yu

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)


Abstract
The space complexity of deterministic streaming algorithms for approximating the length of the longest increasing subsequence (LIS) in a string of length n has been known to be Θ̃(√n) for almost two decades. In contrast, the space complexity of this problem for randomized streaming algorithms remains one of the few longstanding open problems in one-pass streaming. In fact, no better than Ω(log n) lower bounds are known, and the best upper bounds are no better than their deterministic counterparts. In this paper, we push the limits of our understanding of the streaming space complexity of the approximate LIS length problem by studying it in the white-box adversarial streaming model. This model is an intermediate model between deterministic and randomized streaming algorithms that has recently attracted attention. In the white-box model, the streaming algorithm can draw fresh randomness when processing each incoming element, but an adversary generating the stream observes all previously used randomness and adaptively chooses the subsequent elements of the stream. We prove a tight (up to logarithmic factors) Ω(√n) space lower bound for any white-box streaming algorithm that approximates the length of the LIS of a stream of length n to within a factor better than 1.1. Thus, for this problem, white-box algorithms offer no improvement over deterministic ones.

Cite as

Anna Gal, Gillat Kol, Raghuvansh R. Saxena, and Huacheng Yu. Optimal White-Box Adversarial Streaming Lower Bounds for Approximating LIS Length. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 64:1-64:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{gal_et_al:LIPIcs.ITCS.2026.64,
  author =	{Gal, Anna and Kol, Gillat and Saxena, Raghuvansh R. and Yu, Huacheng},
  title =	{{Optimal White-Box Adversarial Streaming Lower Bounds for Approximating LIS Length}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{64:1--64:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.64},
  URN =		{urn:nbn:de:0030-drops-253519},
  doi =		{10.4230/LIPIcs.ITCS.2026.64},
  annote =	{Keywords: White-bos streaming, Longest increasing subsequence}
}
Document
Languages of Words of Low Automatic Complexity Are Hard to Compute

Authors: Joey Chen, Bjørn Kjos-Hanssen, Ivan Koswara, Linus Richter, and Frank Stephan

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)


Abstract
The automatic complexity of a finite word (string) is an analogue for finite automata of Sipser’s distinguishing complexity (1983) and was introduced by Shallit and Wang (2001). For a finite alphabet Σ of at least two elements, we consider the non-deterministic automatic complexity given by exactly - yet not necessarily uniquely - accepting automata: a word x ∈ Σ^* has exact non-deterministic automatic complexity k ∈ ℕ if there exists a non-deterministic automaton of k states which accepts x while rejecting every other word of the same length as x, and no automaton of fewer states has this property. Importantly, and in contrast to the classical notion, the witnessing automaton may have multiple paths of computation accepting x. We denote this measure of complexity by A_{Ne}, and study a class of languages of low A_{Ne}-complexity defined as L_q = {x ∈ Σ^* : A_{Ne}(x) < q|x|}, which is parameterised by rationals q ∈ (0,1/2) (generalising a class of sets first studied by Kjos-Hanssen). We show that for every q ∈ (0,1/2), this class is neither context-free nor recognisable by certain Boolean circuits. In the process, we answer an open question of Kjos-Hanssen quantifying the complexity of L_{1/3} in terms of Boolean circuits, and also prove the Shannon effect for A_{Ne}.

Cite as

Joey Chen, Bjørn Kjos-Hanssen, Ivan Koswara, Linus Richter, and Frank Stephan. Languages of Words of Low Automatic Complexity Are Hard to Compute. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 24:1-24:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{chen_et_al:LIPIcs.FSTTCS.2025.24,
  author =	{Chen, Joey and Kjos-Hanssen, Bj{\o}rn and Koswara, Ivan and Richter, Linus and Stephan, Frank},
  title =	{{Languages of Words of Low Automatic Complexity Are Hard to Compute}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{24:1--24:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.24},
  URN =		{urn:nbn:de:0030-drops-251055},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.24},
  annote =	{Keywords: Automatic complexity, automata theory, formal languages, Boolean circuits, Shannon effect}
}
Document
Invited Paper
ASP Essentials: Modelling and Efficient Solving (Invited Paper)

Authors: Giuseppe Mazzotta and Francesco Ricca

Published in: OASIcs, Volume 138, Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025)


Abstract
Answer Set Programming (ASP) is a logic-based Knowledge Representation and Reasoning (KRR) paradigm that facilitates rapid prototyping of solutions for complex problems. It is particularly effective for tackling Deep Reasoning tasks involving exponentially large search spaces, such as combinatorial search and optimization. While getting started with ASP is relatively easy, mastering its advanced constructs and scaling solutions to real-world problem sizes can be challenging. This paper provides an introduction to ASP, guiding the reader from the fundamentals of the language to the application of programming methodologies and the computation of answer sets. Beyond the core framework, the paper also examines selected extensions of ASP that enable the modeling of complex problems, as well as compilation techniques designed to enhance solving efficiency. Furthermore, it mentions some recent tools that combine ASP with LLMs.

Cite as

Giuseppe Mazzotta and Francesco Ricca. ASP Essentials: Modelling and Efficient Solving (Invited Paper). In Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025). Open Access Series in Informatics (OASIcs), Volume 138, pp. 8:1-8:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{mazzotta_et_al:OASIcs.RW.2024/2025.8,
  author =	{Mazzotta, Giuseppe and Ricca, Francesco},
  title =	{{ASP Essentials: Modelling and Efficient Solving}},
  booktitle =	{Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 \& RW 2025)},
  pages =	{8:1--8:21},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-405-5},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{138},
  editor =	{Artale, Alessandro and Bienvenu, Meghyn and Garc{\'\i}a, Yazm{\'\i}n Ib\'{a}\~{n}ez and Murlak, Filip},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.RW.2024/2025.8},
  URN =		{urn:nbn:de:0030-drops-250539},
  doi =		{10.4230/OASIcs.RW.2024/2025.8},
  annote =	{Keywords: Answer Set Programming, ASP with Quantifiers, Grounding Bottleneck, Compilation-based ASP solving, Neurosymbolic AI, LLMs}
}
Document
Cache Timing Leakages in Zero-Knowledge Protocols

Authors: Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)


Abstract
The area of modern zero-knowledge proof systems has seen a significant rise in popularity over the last couple of years, with new techniques and optimized constructions emerging on a regular basis. As the field matures, the aspect of implementation attacks becomes more relevant, however side-channel attacks on zero-knowledge proof systems have seen surprisingly little treatment so far. In this paper, we give an overview of potential attack vectors and show that some of the underlying finite field libraries, and implementations of heavily used components like hash functions using them, are vulnerable w.r.t. cache attacks on CPUs. On the positive side, we demonstrate that the computational overhead to protect against these attacks is relatively small.

Cite as

Shibam Mukherjee, Christian Rechberger, and Markus Schofnegger. Cache Timing Leakages in Zero-Knowledge Protocols. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 1:1-1:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{mukherjee_et_al:LIPIcs.AFT.2025.1,
  author =	{Mukherjee, Shibam and Rechberger, Christian and Schofnegger, Markus},
  title =	{{Cache Timing Leakages in Zero-Knowledge Protocols}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{1:1--1:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.1},
  URN =		{urn:nbn:de:0030-drops-247201},
  doi =		{10.4230/LIPIcs.AFT.2025.1},
  annote =	{Keywords: zero-knowledge, protocol, cache timing, side-channel, leakage}
}
Document
Mutational Signature Refitting on Sparse Pan-Cancer Data

Authors: Gal Gilad, Teresa M. Przytycka, and Roded Sharan

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)


Abstract
Mutational processes shape cancer genomes, leaving characteristic marks that are termed signatures. The level of activity of each such process, or its signature exposure, provides important information on the disease, improving patient stratification and the prediction of drug response. Thus, there is growing interest in developing refitting methods that decipher those exposures. Previous work in this domain was unsupervised in nature, employing algebraic decomposition and probabilistic inference methods. Here we provide a supervised approach to the problem of signature refitting and show its superiority over current methods. Our method, SuRe, leverages a neural network model to capture correlations between signature exposures in real data. We show that SuRe outperforms previous methods on sparse mutation data from tumor type specific data sets, as well as pan-cancer data sets, with an increasing advantage as the data become sparser. We further demonstrate its utility in clinical settings.

Cite as

Gal Gilad, Teresa M. Przytycka, and Roded Sharan. Mutational Signature Refitting on Sparse Pan-Cancer Data. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 11:1-11:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{gilad_et_al:LIPIcs.WABI.2025.11,
  author =	{Gilad, Gal and Przytycka, Teresa M. and Sharan, Roded},
  title =	{{Mutational Signature Refitting on Sparse Pan-Cancer Data}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{11:1--11:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.11},
  URN =		{urn:nbn:de:0030-drops-239374},
  doi =		{10.4230/LIPIcs.WABI.2025.11},
  annote =	{Keywords: mutational signatures, signature refitting, cancer genomics, genomic data analysis, somatic mutations}
}
Document
Track A: Algorithms, Complexity and Games
Counting Permutation Patterns with Multidimensional Trees

Authors: Gal Beniamini and Nir Lavee

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)


Abstract
We consider the well-studied pattern-counting problem: given a permutation π ∈ 𝕊_n and an integer k > 1, count the number of order-isomorphic occurrences of every pattern τ ∈ 𝕊_k in π. Our first result is an 𝒪̃(n²)-time algorithm for k = 6 and k = 7. The proof relies heavily on a new family of graphs that we introduce, called pattern-trees. Every such tree corresponds to an integer linear combination of permutations in 𝕊_k, and is associated with linear extensions of partially ordered sets. We design an evaluation algorithm for these combinations, and apply it to a family of linearly-independent trees. For k = 8, we show a barrier: the subspace spanned by trees in the previous family has dimension exactly |𝕊₈| - 1, one less than required. Our second result is an 𝒪̃(n^{7/4})-time algorithm for k = 5. This algorithm extends the framework of pattern-trees by speeding-up their evaluation in certain cases. A key component of the proof is the introduction of pair-rectangle-trees, a data structure for dominance counting.

Cite as

Gal Beniamini and Nir Lavee. Counting Permutation Patterns with Multidimensional Trees. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 24:1-24:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{beniamini_et_al:LIPIcs.ICALP.2025.24,
  author =	{Beniamini, Gal and Lavee, Nir},
  title =	{{Counting Permutation Patterns with Multidimensional Trees}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{24:1--24:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.24},
  URN =		{urn:nbn:de:0030-drops-234018},
  doi =		{10.4230/LIPIcs.ICALP.2025.24},
  annote =	{Keywords: Pattern counting, patterns, permutations}
}
Document
Succinct Fermion Data Structures

Authors: Joseph Carolan and Luke Schaeffer

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)


Abstract
Simulating fermionic systems on a quantum computer requires representing fermionic states using qubits. The complexity of many simulation algorithms depends on the complexity of implementing rotations generated by fermionic creation-annihilation operators, and the space depends on the number of qubits used. While standard fermion encodings like Jordan-Wigner are space optimal for arbitrary fermionic systems, physical symmetries like particle conservation can reduce the number of physical configurations, allowing improved space complexity. Such space saving is only feasible if the gate overhead is small, suggesting a (quantum) data structures problem, wherein one would like to minimize space used to represent a fermionic state, while still enabling efficient rotations. We define a structure which naturally captures mappings from fermions to systems of qubits. We then instantiate it in two ways, giving rise to two new second-quantized fermion encodings of F fermions in M modes. An information theoretic minimum of I: = ⌈log₂ binom(M,F)⌉ qubits is required for such systems, a bound we nearly match over the entire parameter regime. 1) Our first construction uses I + o(I) qubits when F = o(M), and allows rotations generated by creation-annihilation operators in O(I) gates and O(log M log log M) depth. 2) Our second construction uses I + O(1) qubits when F = Θ(M), and allows rotations generated by creation-annihilation operators in O(I³) gates. In relation to comparable prior work, the first represents a polynomial improvement in both space and gate complexity (against Kirby et al. 2022), and the second represents an exponential improvement in gate complexity at the cost of only a constant number of additional qubits (against Harrison et al. or Shee et al. 2022), in the described parameter regimes.

Cite as

Joseph Carolan and Luke Schaeffer. Succinct Fermion Data Structures. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 32:1-32:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{carolan_et_al:LIPIcs.ITCS.2025.32,
  author =	{Carolan, Joseph and Schaeffer, Luke},
  title =	{{Succinct Fermion Data Structures}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{32:1--32:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.32},
  URN =		{urn:nbn:de:0030-drops-226600},
  doi =		{10.4230/LIPIcs.ITCS.2025.32},
  annote =	{Keywords: quantum computing, data structures, fermion encodings}
}
Document
Polynomial Size, Short-Circuit Resilient Circuits for NC

Authors: Yael Tauman Kalai and Raghuvansh R. Saxena

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)


Abstract
We show how to convert any circuit of poly-logarithmic depth and polynomial size into a functionally equivalent circuit of polynomial size (and polynomial depth) that is resilient to adversarial short-circuit errors. Specifically, the resulting circuit computes the same function even if up to ε d gates on every root-to-leaf path are short-circuited, i.e., their output is replaced with the value of one of its inputs, where d is the depth of the circuit and ε > 0 is a fixed constant. Previously, such a result was known for formulas (Kalai-Lewko-Rao, FOCS 2012). It was also known how to convert general circuits to error resilient ones whose size is quasi-polynomial in the size of the original circuit (Efremenko et al. STOC 2022). The reason both these works do not extend to our setting is that there may be many paths from the root to a given gate, and the resilient circuits needs to "remember" a lot of information about these paths, which causes it to be large. Our main idea is to reduce the amount of this information at the cost of increasing the depth of the resilient circuit.

Cite as

Yael Tauman Kalai and Raghuvansh R. Saxena. Polynomial Size, Short-Circuit Resilient Circuits for NC. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 90:1-90:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{taumankalai_et_al:LIPIcs.ITCS.2025.90,
  author =	{Tauman Kalai, Yael and Saxena, Raghuvansh R.},
  title =	{{Polynomial Size, Short-Circuit Resilient Circuits for NC}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{90:1--90:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.90},
  URN =		{urn:nbn:de:0030-drops-227181},
  doi =		{10.4230/LIPIcs.ITCS.2025.90},
  annote =	{Keywords: Error-resilient computation, short-circuit errors}
}
Document
New Pseudorandom Generators and Correlation Bounds Using Extractors

Authors: Vinayak M. Kumar

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)


Abstract
We establish new correlation bounds and pseudorandom generators for a collection of computation models. These models are all natural generalization of structured low-degree 𝔽₂-polynomials that we did not have correlation bounds for before. In particular: - We construct a PRG for width-2 poly(n)-length branching programs which read d bits at a time with seed length 2^O(√{log n}) ⋅ d²log²(1/ε). This comes quadratically close to optimal dependence in d and log(1/ε). Improving the dependence on n would imply nontrivial PRGs for log n-degree 𝔽₂-polynomials. The previous PRG by Bogdanov, Dvir, Verbin, and Yehudayoff had an exponentially worse dependence on d with seed length of O(dlog n + d2^dlog(1/ε)). - We provide the first nontrivial (and nearly optimal) correlation bounds and PRGs against size-n^Ω(log n) AC⁰ circuits with either n^{.99} SYM gates (computing an arbitrary symmetric function) or n^{.49} THR gates (computing an arbitrary linear threshold function). This is a generalization of sparse 𝔽₂-polynomials, which can be simulated by an AC⁰ circuit with one parity gate at the top. Previous work of Servedio and Tan only handled n^{.49} SYM gates or n^{.24} THR gates, and previous work of Lovett and Srinivasan only handled polynomial-size circuits. - We give exponentially small correlation bounds against degree-n^O(1) 𝔽₂-polynomials which are set-multilinear over some arbitrary partition of the input into n^{1-O(1)} parts (noting that at n parts, we recover all low degree polynomials). This vastly generalizes correlation bounds against degree-d polynomials which are set-multilinear over a fixed partition into d blocks, which were established by Bhrushundi, Harsha, Hatami, Kopparty, and Kumar. The common technique behind all of these results is to fortify a hard function with the right type of extractor to obtain stronger correlation bounds for more general models of computation. Although this technique has been used in previous work, they rely on the model simplifying drastically under random restrictions. We view our results as a proof of concept that such fortification can be done even for classes that do not enjoy such behavior.

Cite as

Vinayak M. Kumar. New Pseudorandom Generators and Correlation Bounds Using Extractors. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 68:1-68:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{kumar:LIPIcs.ITCS.2025.68,
  author =	{Kumar, Vinayak M.},
  title =	{{New Pseudorandom Generators and Correlation Bounds Using Extractors}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{68:1--68:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.68},
  URN =		{urn:nbn:de:0030-drops-226961},
  doi =		{10.4230/LIPIcs.ITCS.2025.68},
  annote =	{Keywords: Pseudorandom Generators, Correlation Bounds, Constant-Depth Circuits}
}
Document
Position
Large Language Models and Knowledge Graphs: Opportunities and Challenges

Authors: Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1


Abstract
Large Language Models (LLMs) have taken Knowledge Representation - and the world - by storm. This inflection point marks a shift from explicit knowledge representation to a renewed focus on the hybrid representation of both explicit knowledge and parametric knowledge. In this position paper, we will discuss some of the common debate points within the community on LLMs (parametric knowledge) and Knowledge Graphs (explicit knowledge) and speculate on opportunities and visions that the renewed focus brings, as well as related research topics and challenges.

Cite as

Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux. Large Language Models and Knowledge Graphs: Opportunities and Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 2:1-2:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@Article{pan_et_al:TGDK.1.1.2,
  author =	{Pan, Jeff Z. and Razniewski, Simon and Kalo, Jan-Christoph and Singhania, Sneha and Chen, Jiaoyan and Dietze, Stefan and Jabeen, Hajira and Omeliyanenko, Janna and Zhang, Wen and Lissandrini, Matteo and Biswas, Russa and de Melo, Gerard and Bonifati, Angela and Vakaj, Edlira and Dragoni, Mauro and Graux, Damien},
  title =	{{Large Language Models and Knowledge Graphs: Opportunities and Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:38},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.2},
  URN =		{urn:nbn:de:0030-drops-194766},
  doi =		{10.4230/TGDK.1.1.2},
  annote =	{Keywords: Large Language Models, Pre-trained Language Models, Knowledge Graphs, Ontology, Retrieval Augmented Language Models}
}
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