24 Search Results for "Tan, Cheng"

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Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.23
Formalizing the Hidden Number Problem in Isabelle/HOL

Authors: Sage Binder, Eric Ren, and Katherine Kosaian

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
We formalize the hidden number problem (HNP), as introduced in a seminal work by Boneh and Venkatesan in 1996, in Isabelle/HOL. Intuitively, the HNP involves demonstrating the existence of an algorithm (the "adversary") which can compute (with high probability) a hidden number α given access to a bit-leaking oracle. Originally developed to establish the security of Diffie-Hellman key exchange, the HNP has since been used not only for protocol security but also in cryptographic attacks, including notable ones on DSA and ECDSA. Further, as the HNP establishes an expressive paradigm for reasoning about security in the context of information leakage, many HNP variants for other specialized cryptographic applications have since been developed. A main contribution of our work is explicating and clarifying the HNP proof blueprint from the original source material; naturally, formalization forces us to make all assumptions and proof steps precise and transparent. For example, the source material did not explicitly define the adversary and only abstractly defined what information is being leaked; our formalization concretizes both definitions. Additionally, the HNP makes use of an instance of Babai’s nearest plane algorithm, which solves the approximate closest vector problem; we formalize this as a result of independent interest. Our formalizations of Babai’s algorithm and the HNP adversary are executable, setting up potential future work, e.g. in developing formally verified instances of cryptographic attacks.
Cite as

Sage Binder, Eric Ren, and Katherine Kosaian. Formalizing the Hidden Number Problem in Isabelle/HOL. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 23:1-23:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{binder_et_al:LIPIcs.ITP.2025.23,
  author =	{Binder, Sage and Ren, Eric and Kosaian, Katherine},
  title =	{{Formalizing the Hidden Number Problem in Isabelle/HOL}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{23:1--23:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.23},
  URN =		{urn:nbn:de:0030-drops-246216},
  doi =		{10.4230/LIPIcs.ITP.2025.23},
  annote =	{Keywords: hidden number problem, Babai’s nearest plane algorithm, cryptography, interactive theorem proving, Isabelle/HOL}
}
Document
DOI: 10.4230/LIPIcs.TQC.2025.9
Efficient Quantum Pseudorandomness from Hamiltonian Phase States

Authors: John Bostanci, Jonas Haferkamp, Dominik Hangleiter, and Alexander Poremba

Published in: LIPIcs, Volume 350, 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)

Abstract
Quantum pseudorandomness has found applications in many areas of quantum information, ranging from entanglement theory, to models of scrambling phenomena in chaotic quantum systems, and, more recently, in the foundations of quantum cryptography. Kretschmer (TQC '21) showed that both pseudorandom states and pseudorandom unitaries exist even in a world without classical one-way functions. To this day, however, all known constructions require classical cryptographic building blocks which are themselves synonymous with the existence of one-way functions, and which are also challenging to implement on realistic quantum hardware. In this work, we seek to make progress on both of these fronts simultaneously - by decoupling quantum pseudorandomness from classical cryptography altogether. We introduce a quantum hardness assumption called the Hamiltonian Phase State (HPS) problem, which is the task of decoding output states of a random instantaneous quantum polynomial-time (IQP) circuit. Hamiltonian phase states can be generated very efficiently using only Hadamard gates, single-qubit Z rotations and CNOT circuits. We show that the hardness of our problem reduces to a worst-case version of the problem, and we provide evidence that our assumption is plausibly fully quantum; meaning, it cannot be used to construct one-way functions. We also show information-theoretic hardness when only few copies of HPS are available by proving an approximate t-design property of our ensemble. Finally, we show that our HPS assumption and its variants allow us to efficiently construct many pseudorandom quantum primitives, ranging from pseudorandom states, to quantum pseudoentanglement, to pseudorandom unitaries, and even primitives such as public-key encryption with quantum keys.
Cite as

John Bostanci, Jonas Haferkamp, Dominik Hangleiter, and Alexander Poremba. Efficient Quantum Pseudorandomness from Hamiltonian Phase States. In 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 350, pp. 9:1-9:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bostanci_et_al:LIPIcs.TQC.2025.9,
  author =	{Bostanci, John and Haferkamp, Jonas and Hangleiter, Dominik and Poremba, Alexander},
  title =	{{Efficient Quantum Pseudorandomness from Hamiltonian Phase States}},
  booktitle =	{20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)},
  pages =	{9:1--9:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-392-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{350},
  editor =	{Fefferman, Bill},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TQC.2025.9},
  URN =		{urn:nbn:de:0030-drops-240586},
  doi =		{10.4230/LIPIcs.TQC.2025.9},
  annote =	{Keywords: Quantum pseudorandomness, quantum phase states, quantum cryptography}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.12
Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing

Authors: Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Millions of biological sample records collected in the last few centuries archived in natural history collections are un-georeferenced. Georeferencing complex locality descriptions associated with these collection samples is a highly labour-intensive task collection agencies struggle with. None of the existing automated methods exploit maps that are an essential tool for georeferencing complex relations. We present preliminary experiments and results of a novel method that exploits multi-modal capabilities of recent Large Multi-Modal Models (LMM). This method enables the model to visually contextualize spatial relations it reads in the locality description. We use a grid-based approach to adapt these auto-regressive models for this task in a zero-shot setting. Our experiments conducted on a small manually annotated dataset show impressive results for our approach (∼1 km Average distance error) compared to uni-modal georeferencing with Large Language Models and existing georeferencing tools. The paper also discusses the findings of the experiments in light of an LMM’s ability to comprehend fine-grained maps. Motivated by these results, a practical framework is proposed to integrate this method into a georeferencing workflow.
Cite as

Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones. Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{wijegunarathna_et_al:LIPIcs.GIScience.2025.12,
  author =	{Wijegunarathna, Kalana and Stock, Kristin and Jones, Christopher B.},
  title =	{{Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.12},
  URN =		{urn:nbn:de:0030-drops-238412},
  doi =		{10.4230/LIPIcs.GIScience.2025.12},
  annote =	{Keywords: Large Multi-Modal Models, Large Language Models, LLM, Georeferencing, Natural History collections}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.14
Human Readable Compression of GFA Paths Using Grammar-Based Code

Authors: Peter Heringer and Daniel Doerr

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Pangenome graphs offer a compact and comprehensive representation of genomic diversity, improving tasks such as variant calling, genotyping, and other downstream analyses. Although the underlying graph structures scale sublinearly with the number of haplotypes, the widely used GFA file format suffers from rapidly growing file sizes due to the explicit and repetitive encoding of haplotype paths. In this work, we introduce an extension to the GFA format that enables efficient grammar-based compression of haplotype paths while retaining human readability. In addition, grammar-based encoding provides an efficient in-memory data structure that does not require decompression, but conversely improves the runtime of many computational tasks that involve haplotype comparisons. We present sqz, a method that makes use of the proposed format extension to encode haplotype paths using byte pair encoding, a grammar-based compression scheme. We evaluate sqz on recent human pangenome graphs from Heumos et al. and the Human Pangenome Reference Consortium (HPRC), comparing it to existing compressors bgzip, gbz, and sequitur. sqz scales sublinearly with the number of haplotypes in a pangenome graph and consistently achieves higher compression ratios than sequitur and up to 5 times better compression than bgzip in HPRC graphs and up to 10 times in the graph from Heumos et al.. When combined with bgzip, sqz matches or excels the compression ratio of gbz across all our datasets. These results demonstrate the potential of our proposed extension of the GFA format in reducing haplotype path redundancy and improving storage efficiency for pangenome graphs.
Cite as

Peter Heringer and Daniel Doerr. Human Readable Compression of GFA Paths Using Grammar-Based Code. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{heringer_et_al:LIPIcs.WABI.2025.14,
  author =	{Heringer, Peter and Doerr, Daniel},
  title =	{{Human Readable Compression of GFA Paths Using Grammar-Based Code}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{14:1--14:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.14},
  URN =		{urn:nbn:de:0030-drops-239395},
  doi =		{10.4230/LIPIcs.WABI.2025.14},
  annote =	{Keywords: pangenomics, pangenome graphs, compression, grammar-based code, byte pair encoding}
}
Document
Short Paper
DOI: 10.4230/LIPIcs.CP.2025.42
Towards Modern and Modular SAT for LCG (Short Paper)

Authors: Jip J. Dekker, Alexey Ignatiev, Peter J. Stuckey, and Allen Z. Zhong

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
Lazy Clause Generation (LCG) is an architecture for building Constraint Programming (CP) solvers using an underlying Boolean Satisfiability (SAT) engine. The CP propagation engine lazily creates clauses that define the integer variables and impose problem restrictions. The SAT engine uses the clausal model to reason and search, including, crucially, the generation of nogoods. However, while SAT solving has made significant advances recently, the underlying SAT technology in most LCG solvers has largely remained the same. Using a new interface to SAT engines, IPASIR-UP, we can construct an LCG solver which can swap out the underlying SAT engine with any that supports the interface. This new approach means we need to revisit many of the design and engineering decisions for LCG solvers, to take maximum advantage of a better underlying SAT engine while adhering to the restrictions of the interface. In this paper, we explore the possibilities and challenges of using IPASIR-UP for LCG, showing that it can be used to create a highly competitive solver.
Cite as

Jip J. Dekker, Alexey Ignatiev, Peter J. Stuckey, and Allen Z. Zhong. Towards Modern and Modular SAT for LCG (Short Paper). In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 42:1-42:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dekker_et_al:LIPIcs.CP.2025.42,
  author =	{Dekker, Jip J. and Ignatiev, Alexey and Stuckey, Peter J. and Zhong, Allen Z.},
  title =	{{Towards Modern and Modular SAT for LCG}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{42:1--42:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.42},
  URN =		{urn:nbn:de:0030-drops-239038},
  doi =		{10.4230/LIPIcs.CP.2025.42},
  annote =	{Keywords: Lazy Clause Generation, Boolean Satisfiability, IPASIR-UP}
}
Document
DOI: 10.4230/LIPIcs.SAT.2025.10
Fine-Grained Complexity Analysis of Dependency Quantified Boolean Formulas

Authors: Che Cheng, Long-Hin Fung, Jie-Hong Roland Jiang, Friedrich Slivovsky, and Tony Tan

Published in: LIPIcs, Volume 341, 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)

Abstract
Dependency Quantified Boolean Formulas (DQBF) extend Quantified Boolean Formulas by allowing each existential variable to depend on an explicitly specified subset of the universal variables. The satisfiability problem for DQBF is NEXP-complete in general, with only a few tractable fragments known to date. We investigate the complexity of DQBF with k existential variables (k-DQBF) under structural restrictions on the matrix - specifically, when it is in Conjunctive Normal Form (CNF) or Disjunctive Normal Form (DNF) - as well as under constraints on the dependency sets. For DNF matrices, we obtain a clear classification: 2-DQBF is PSPACE-complete, while 3-DQBF is NEXP-hard, even with disjoint dependencies. For CNF matrices, the picture is more nuanced: we show that the complexity of k-DQBF ranges from NL-complete for 2-DQBF with disjoint dependencies to NEXP-complete for 6-DQBF with arbitrary dependencies.
Cite as

Che Cheng, Long-Hin Fung, Jie-Hong Roland Jiang, Friedrich Slivovsky, and Tony Tan. Fine-Grained Complexity Analysis of Dependency Quantified Boolean Formulas. In 28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 341, pp. 10:1-10:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cheng_et_al:LIPIcs.SAT.2025.10,
  author =	{Cheng, Che and Fung, Long-Hin and Jiang, Jie-Hong Roland and Slivovsky, Friedrich and Tan, Tony},
  title =	{{Fine-Grained Complexity Analysis of Dependency Quantified Boolean Formulas}},
  booktitle =	{28th International Conference on Theory and Applications of Satisfiability Testing (SAT 2025)},
  pages =	{10:1--10:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-381-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{341},
  editor =	{Berg, Jeremias and Nordstr\"{o}m, Jakob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2025.10},
  URN =		{urn:nbn:de:0030-drops-237441},
  doi =		{10.4230/LIPIcs.SAT.2025.10},
  annote =	{Keywords: Dependency quantified Boolean formulas, complexity, completeness, conjunctive normal form, disjunctive normal form}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.91
Incremental Approximate Maximum Flow via Residual Graph Sparsification

Authors: Gramoz Goranci, Monika Henzinger, Harald Räcke, and A. R. Sricharan

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We give an algorithm that, with high probability, maintains a (1-ε)-approximate s-t maximum flow in undirected, uncapacitated n-vertex graphs undergoing m edge insertions in Õ(m+ n F^*/ε) total update time, where F^{*} is the maximum flow on the final graph. This is the first algorithm to achieve polylogarithmic amortized update time for dense graphs (m = Ω(n²)), and more generally, for graphs where F^* = Õ(m/n). At the heart of our incremental algorithm is the residual graph sparsification technique of Karger and Levine [SICOMP '15], originally designed for computing exact maximum flows in the static setting. Our main contributions are (i) showing how to maintain such sparsifiers for approximate maximum flows in the incremental setting and (ii) generalizing the cut sparsification framework of Fung et al. [SICOMP '19] from undirected graphs to balanced directed graphs.
Cite as

Gramoz Goranci, Monika Henzinger, Harald Räcke, and A. R. Sricharan. Incremental Approximate Maximum Flow via Residual Graph Sparsification. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 91:1-91:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{goranci_et_al:LIPIcs.ICALP.2025.91,
  author =	{Goranci, Gramoz and Henzinger, Monika and R\"{a}cke, Harald and Sricharan, A. R.},
  title =	{{Incremental Approximate Maximum Flow via Residual Graph Sparsification}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{91:1--91:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.91},
  URN =		{urn:nbn:de:0030-drops-234686},
  doi =		{10.4230/LIPIcs.ICALP.2025.91},
  annote =	{Keywords: incremental flow, sparsification, approximate flow}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.13
FuzzFlesh: Randomised Testing of Decompilers via Control Flow Graph-Based Program Generation

Authors: Amber Gorzynski and Alastair F. Donaldson

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Decompilation is the process of translating compiled code into high-level code. Control flow recovery is a challenging part of the process. "Misdecompilations" can occur, whereby the decompiled code does not accurately represent the semantics of the compiled code, despite it being syntactically valid. This is problematic because it can mislead users who are trying to reason about the program. We present CFG-based program generation: a novel approach to randomised testing that aims to improve the control flow recovery of decompilers. CFG-based program generation involves randomly generating control flow graphs (CFGs) and paths through each graph. Inspired by prior work in the domain of GPU computing, (CFG, path) pairs are "fleshed" into test programs. Each program is decompiled and recompiled. The test oracle verifies whether the actual runtime path through the graph matches the expected path. Any difference in the execution paths after recompilation indicates a possible misdecompilation. A key benefit of this approach is that it is largely independent of the source and target languages in question because it is focused on control flow. The approach is therefore applicable to numerous decompilation settings. The trade-off resulting from the focus on control flow is that misdecompilation bugs that do not relate to control flow (e.g. bugs that involve specific arithmetic operations) are out of scope. We have implemented this approach in FuzzFlesh, an open-source randomised testing tool. FuzzFlesh can be easily configured to target a variety of low-level languages and decompiler toolchains because most of the CFG and path generation process is language-independent. At present, FuzzFlesh supports testing decompilation of Java bytecode, .NET assembly and x86 machine code. In addition to program generation, FuzzFlesh also includes an automated test-case reducer that operates on the CFG rather than the low-level program, which means that it can be applied to any of the target languages. We present a large experimental campaign applying FuzzFlesh to a variety of decompilers, leading to the discovery of 12 previously-unknown bugs across two language formats, six of which have been fixed. We present experiments comparing our generic FuzzFlesh tool to two state-of-the-art decompiler testing tools targeted at specific languages. As expected, the coverage our generic FuzzFlesh tool achieves on a given decompiler is lower than the coverage achieved by a tool specifically designed for the input format of that decompiler. However, due to its focus on control flow, FuzzFlesh is able to cover sections of control flow recovery code that the targeted tools cannot reach, and identify control flow related bugs that the targeted tools miss.
Cite as

Amber Gorzynski and Alastair F. Donaldson. FuzzFlesh: Randomised Testing of Decompilers via Control Flow Graph-Based Program Generation. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 13:1-13:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gorzynski_et_al:LIPIcs.ECOOP.2025.13,
  author =	{Gorzynski, Amber and Donaldson, Alastair F.},
  title =	{{FuzzFlesh: Randomised Testing of Decompilers via Control Flow Graph-Based Program Generation}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{13:1--13:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.13},
  URN =		{urn:nbn:de:0030-drops-233062},
  doi =		{10.4230/LIPIcs.ECOOP.2025.13},
  annote =	{Keywords: Decompiler, Reverse Engineering, Control Flow, Software Testing, Fuzzing}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.6
Detecting Functionality-Specific Vulnerabilities via Retrieving Individual Functionality-Equivalent APIs in Open-Source Repositories

Authors: Tianyu Chen, Zeyu Wang, Lin Li, Ding Li, Zongyang Li, Xiaoning Chang, Pan Bian, Guangtai Liang, Qianxiang Wang, and Tao Xie

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Functionality-specific vulnerabilities, which mainly occur in Application Programming Interfaces (APIs) with specific functionalities, are crucial for software developers to detect and avoid. When detecting individual functionality-specific vulnerabilities, the existing two categories of approaches are ineffective because they consider only the API bodies and are unable to handle diverse implementations of functionality-equivalent APIs. To effectively detect functionality-specific vulnerabilities, we propose APISS, the first approach to utilize API doc strings and signatures instead of API bodies. APISS first retrieves functionality-equivalent APIs for APIs with existing vulnerabilities and then migrates Proof-of-Concepts (PoCs) of the existing vulnerabilities for newly detected vulnerable APIs. To retrieve functionality-equivalent APIs, we leverage a Large Language Model for API embedding to improve the accuracy and address the effectiveness and scalability issues suffered by the existing approaches. To migrate PoCs of the existing vulnerabilities for newly detected vulnerable APIs, we design a semi-automatic schema to substantially reduce manual costs. We conduct a comprehensive evaluation to empirically compare APISS with four state-of-the-art approaches of detecting vulnerabilities and two state-of-the-art approaches of retrieving functionality-equivalent APIs. The evaluation subjects include 180 widely used Java repositories using 10 existing vulnerabilities, along with their PoCs. The results show that APISS effectively retrieves functionality-equivalent APIs, achieving a Top-1 Accuracy of 0.81 while the best of the baselines under comparison achieves only 0.55. APISS is highly efficient: the manual costs are within 10 minutes per vulnerability and the end-to-end runtime overhead of testing one candidate API is less than 2 hours. APISS detects 179 new vulnerabilities and receives 60 new CVE IDs, bringing high value to security practice.
Cite as

Tianyu Chen, Zeyu Wang, Lin Li, Ding Li, Zongyang Li, Xiaoning Chang, Pan Bian, Guangtai Liang, Qianxiang Wang, and Tao Xie. Detecting Functionality-Specific Vulnerabilities via Retrieving Individual Functionality-Equivalent APIs in Open-Source Repositories. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 6:1-6:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chen_et_al:LIPIcs.ECOOP.2025.6,
  author =	{Chen, Tianyu and Wang, Zeyu and Li, Lin and Li, Ding and Li, Zongyang and Chang, Xiaoning and Bian, Pan and Liang, Guangtai and Wang, Qianxiang and Xie, Tao},
  title =	{{Detecting Functionality-Specific Vulnerabilities via Retrieving Individual Functionality-Equivalent APIs in Open-Source Repositories}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{6:1--6:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.6},
  URN =		{urn:nbn:de:0030-drops-232999},
  doi =		{10.4230/LIPIcs.ECOOP.2025.6},
  annote =	{Keywords: Application Security, Vulnerability Detection, Large Language Model}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.19
Profile-Guided Field Externalization in an Ahead-Of-Time Compiler

Authors: Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Field externalization is a technique to reduce the footprint of objects by removing fields that most frequently contain zero or null. While researchers have developed ways to bring this optimization into the Java world, these have been limited to research compilers or virtual machines for embedded systems. In this work, we present a novel field externalization technique that uses information from static analysis and profiling to determine externalizable fields. During compilation, we remove those fields and define companion classes. These are used in case of non-default-value writes to the externalized fields. Our approach also correctly handles synchronization to prevent issues in multithreaded environments. We integrated our approach into the modern Java ahead-of-time compiler GraalVM Native Image. We conducted an evaluation on a diverse set of benchmarks that includes standard and microservice-based benchmarks. For standard benchmarks, our approach reduces the total allocated bytes by 2.76% and the maximum resident set size (max-RSS) by 2.55%. For microservice benchmarks, we achieved a reduction of 6.88% for normalized allocated bytes and 2.45% for max-RSS. We computed these improvements via the geometric mean. The median reductions are are 1.46% (alloc. bytes) and 0.22% (max-RSS) in standard benchmarks, as well as 3.63% (alloc. bytes) and 0.20% (max-RSS) in microservice benchmarks.
Cite as

Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck. Profile-Guided Field Externalization in an Ahead-Of-Time Compiler. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 19:1-19:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kloibhofer_et_al:LIPIcs.ECOOP.2025.19,
  author =	{Kloibhofer, Sebastian and Makor, Lukas and Hofer, Peter and Leopoldseder, David and M\"{o}ssenb\"{o}ck, Hanspeter},
  title =	{{Profile-Guided Field Externalization in an Ahead-Of-Time Compiler}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{19:1--19:32},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.19},
  URN =		{urn:nbn:de:0030-drops-233121},
  doi =		{10.4230/LIPIcs.ECOOP.2025.19},
  annote =	{Keywords: compilation, instrumentation, profiling, fields, externalization, memory footprint reduction, memory footprint optimization}
}
Document
Survey
DOI: 10.4230/TGDK.3.1.3
Uncertainty Management in the Construction of Knowledge Graphs: A Survey

Authors: Lucas Jarnac, Yoan Chabot, and Miguel Couceiro

Published in: TGDK, Volume 3, Issue 1 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 1

Abstract
Knowledge Graphs (KGs) are a major asset for companies thanks to their great flexibility in data representation and their numerous applications, e.g., vocabulary sharing, Q&A or recommendation systems. To build a KG, it is a common practice to rely on automatic methods for extracting knowledge from various heterogeneous sources. However, in a noisy and uncertain world, knowledge may not be reliable and conflicts between data sources may occur. Integrating unreliable data would directly impact the use of the KG, therefore such conflicts must be resolved. This could be done manually by selecting the best data to integrate. This first approach is highly accurate, but costly and time-consuming. That is why recent efforts focus on automatic approaches, which represent a challenging task since it requires handling the uncertainty of extracted knowledge throughout its integration into the KG. We survey state-of-the-art approaches in this direction and present constructions of both open and enterprise KGs. We then describe different knowledge extraction methods and discuss downstream tasks after knowledge acquisition, including KG completion using embedding models, knowledge alignment, and knowledge fusion in order to address the problem of knowledge uncertainty in KG construction. We conclude with a discussion on the remaining challenges and perspectives when constructing a KG taking into account uncertainty.
Cite as

Lucas Jarnac, Yoan Chabot, and Miguel Couceiro. Uncertainty Management in the Construction of Knowledge Graphs: A Survey. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 1, pp. 3:1-3:48, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{jarnac_et_al:TGDK.3.1.3,
  author =	{Jarnac, Lucas and Chabot, Yoan and Couceiro, Miguel},
  title =	{{Uncertainty Management in the Construction of Knowledge Graphs: A Survey}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:48},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.1.3},
  URN =		{urn:nbn:de:0030-drops-233733},
  doi =		{10.4230/TGDK.3.1.3},
  annote =	{Keywords: Knowledge reconciliation, Uncertainty, Heterogeneous sources, Knowledge graph construction}
}
Document
Database Theory in Action
DOI: 10.4230/LIPIcs.ICDT.2025.33
Database Theory in Action: Making Provenance and Probabilistic Database Theory Work in Practice (Invited Talk)

Authors: Silviu Maniu and Pierre Senellart

Published in: LIPIcs, Volume 328, 28th International Conference on Database Theory (ICDT 2025)

Abstract
There has been a rich literature in database theory on how to model and manage the provenance of data (for instance using the semiring framework) and its uncertainty (in particular via probabilistic databases). In this article, we explain how these results have been used as the basis for practical implementations, notably in the ProvSQL system, and how these implementations need to be adapted for the efficient management of provenance and probability for real-world data.
Cite as

Silviu Maniu and Pierre Senellart. Database Theory in Action: Making Provenance and Probabilistic Database Theory Work in Practice (Invited Talk). In 28th International Conference on Database Theory (ICDT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 328, pp. 33:1-33:6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{maniu_et_al:LIPIcs.ICDT.2025.33,
  author =	{Maniu, Silviu and Senellart, Pierre},
  title =	{{Database Theory in Action: Making Provenance and Probabilistic Database Theory Work in Practice (Invited Talk)}},
  booktitle =	{28th International Conference on Database Theory (ICDT 2025)},
  pages =	{33:1--33:6},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-364-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{328},
  editor =	{Roy, Sudeepa and Kara, Ahmet},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2025.33},
  URN =		{urn:nbn:de:0030-drops-229746},
  doi =		{10.4230/LIPIcs.ICDT.2025.33},
  annote =	{Keywords: provenance, probabilistic data, ProvSQL}
}
Document
DOI: 10.4230/OASIcs.PARMA-DITAM.2025.2
Custom Floating-Point Computations for the Optimization of ODE Solvers on FPGA

Authors: Serena Curzel and Marco Gribaudo

Published in: OASIcs, Volume 127, 16th Workshop on Parallel Programming and Run-Time Management Techniques for Many-Core Architectures and 14th Workshop on Design Tools and Architectures for Multicore Embedded Computing Platforms (PARMA-DITAM 2025)

Abstract
Mean Field Analysis and Markovian Agents are powerful techniques for modeling complex systems of distributed interacting objects, for which efficient analytical and numerical solution algorithms can be implemented through linear systems of ordinary differential equations (ODEs). Solving such ODE systems on Field Programmable Gate Arrays (FPGAs) is a promising alternative to traditional CPU- and GPU-based approaches, especially in terms of energy consumption; however, the floating-point computations required are generally thought to be slow and inefficient when implemented on FPGA. In this paper, we demonstrate the use of High-Level Synthesis with automated customization of low-precision floating-point calculations, obtaining hardware accelerators for ODE solvers with improved quality of results and minimal output error. The proposed methodology does not require any manual rewriting of the solver code, but it remains prohibitively slow to evaluate any possible floating-point configuration through logic synthesis; in the future, we will thus implement automated design space exploration methods able to suggest promising configurations under user-defined accuracy and performance constraints.
Cite as

Serena Curzel and Marco Gribaudo. Custom Floating-Point Computations for the Optimization of ODE Solvers on FPGA. In 16th Workshop on Parallel Programming and Run-Time Management Techniques for Many-Core Architectures and 14th Workshop on Design Tools and Architectures for Multicore Embedded Computing Platforms (PARMA-DITAM 2025). Open Access Series in Informatics (OASIcs), Volume 127, pp. 2:1-2:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{curzel_et_al:OASIcs.PARMA-DITAM.2025.2,
  author =	{Curzel, Serena and Gribaudo, Marco},
  title =	{{Custom Floating-Point Computations for the Optimization of ODE Solvers on FPGA}},
  booktitle =	{16th Workshop on Parallel Programming and Run-Time Management Techniques for Many-Core Architectures and 14th Workshop on Design Tools and Architectures for Multicore Embedded Computing Platforms (PARMA-DITAM 2025)},
  pages =	{2:1--2:13},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-363-8},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{127},
  editor =	{Cattaneo, Daniele and Fazio, Maria and Kosmidis, Leonidas and Morabito, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.PARMA-DITAM.2025.2},
  URN =		{urn:nbn:de:0030-drops-229064},
  doi =		{10.4230/OASIcs.PARMA-DITAM.2025.2},
  annote =	{Keywords: Differential Equations, High-Level Synthesis, FPGA, floating-point}
}
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