11 Search Results for "Costa, Gabriele"

Document
DOI: 10.4230/LIPIcs.STACS.2026.5
On the Complexity of Language Membership for Probabilistic Words

Authors: Antoine Amarilli, Mikaël Monet, Paul Raphaël, and Sylvain Salvati

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
We study the membership problem to context-free languages L (CFLs) on probabilistic words, that specify for each position a probability distribution on the letters (assuming independence across positions). Our task is to compute, given a probabilistic word, what is the probability that a word drawn according to the distribution belongs to L. This problem generalizes the problem of counting how many words of length n belong to L, or of counting how many completions of a partial word belong to L. We show that this problem is in polynomial time for unambiguous context-free languages (uCFLs), but can be #P-hard already for unions of two linear uCFLs. More generally, we show that the problem is in polynomial time for so-called poly-slicewise-unambiguous languages, where given a length n we can tractably compute an uCFL for the words of length n in the language. This class includes some inherently ambiguous languages, and implies the tractability of bounded CFLs and of languages recognized by unambiguous polynomial-time counter automata; but we show that the problem can be #P-hard for nondeterministic counter automata, even for Parikh automata with a single counter. We then introduce classes of circuits from knowledge compilation which we use for tractable counting, and show that this covers the tractability of poly-slicewise-unambiguous languages and of some CFLs that are not poly-slicewise-unambiguous. Extending these circuits with negation further allows us to show tractability for the language of primitive words, and for the language of concatenations of two palindromes. We finally show the conditional undecidability of the meta-problem that asks, given a CFG, whether the probabilistic membership problem for that CFG is tractable or #P-hard.
Cite as

Antoine Amarilli, Mikaël Monet, Paul Raphaël, and Sylvain Salvati. On the Complexity of Language Membership for Probabilistic Words. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 5:1-5:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{amarilli_et_al:LIPIcs.STACS.2026.5,
  author =	{Amarilli, Antoine and Monet, Mika\"{e}l and Rapha\"{e}l, Paul and Salvati, Sylvain},
  title =	{{On the Complexity of Language Membership for Probabilistic Words}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{5:1--5:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.5},
  URN =		{urn:nbn:de:0030-drops-254943},
  doi =		{10.4230/LIPIcs.STACS.2026.5},
  annote =	{Keywords: Automaton, probabilistic words, context-free grammar, membership problem}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.18
A Modular Framework for Proof-Search via Formalised Modal Completeness in HOL Light

Authors: Antonella Bilotta, Marco Maggesi, and Cosimo Perini Brogi

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
We extend the existing HOL Light Library for Modal Systems (HOLMS) to support a modular implementation of modal reasoning within the HOL Light proof assistant. We deeply embed axiomatic calculi and relational semantics for seven normal modal logics (K, T, B, K4, S4, S5, GL) and formalise modal adequacy theorems for these systems. We then leverage those formalisations to implement a mechanism for automated reasoning via proof-search in the associated labelled sequent calculi, which we shallowly embed in HOL Light’s goal-stack mechanism. This way, we equip the general-purpose proof assistant with (semi)decision procedures for these logics that, in case of failure to construct a proof for the input formula, return a certified countermodel within the appropriate class for the logic under consideration. On the methodological side, we propose a precise measure of the modularity of our approach by systematically adopting Christopher Strachey’s distinction between ad hoc and parametric polymorphism throughout the library.
Cite as

Antonella Bilotta, Marco Maggesi, and Cosimo Perini Brogi. A Modular Framework for Proof-Search via Formalised Modal Completeness in HOL Light. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 18:1-18:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{bilotta_et_al:LIPIcs.CSL.2026.18,
  author =	{Bilotta, Antonella and Maggesi, Marco and Perini Brogi, Cosimo},
  title =	{{A Modular Framework for Proof-Search via Formalised Modal Completeness in HOL Light}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{18:1--18:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.18},
  URN =		{urn:nbn:de:0030-drops-254427},
  doi =		{10.4230/LIPIcs.CSL.2026.18},
  annote =	{Keywords: Modal logic, HOL Light, Labelled sequent calculi, Logical verification, Interactive theorem proving, Automated proof-search}
}
Document
DOI: 10.4230/LIPIcs.CP.2025.21
Practically Feasible Proof Logging for Pseudo-Boolean Optimization

Authors: Wietze Koops, Daniel Le Berre, Magnus O. Myreen, Jakob Nordström, Andy Oertel, Yong Kiam Tan, and Marc Vinyals

Published in: LIPIcs, Volume 340, 31st International Conference on Principles and Practice of Constraint Programming (CP 2025)

Abstract
Certifying solvers have long been standard for decision problems in Boolean satisfiability (SAT), allowing for proof logging and checking with very limited overhead, but developing similar tools for combinatorial optimization has remained a challenge. A recent promising approach covering a wide range of solving paradigms is pseudo-Boolean proof logging, but this has mostly consisted of proof-of-concept works far from delivering the performance required for real-world deployment. In this work, we present an efficient toolchain based on VeriPB and CakePB for formally verified pseudo-Boolean optimization. We implement proof logging for the full range of techniques in the state-of-the-art solvers RoundingSat and Sat4j, including core-guided search and linear programming integration with Farkas certificates and cut generation. Our experimental evaluation shows that proof logging and checking performance in this much more expressive paradigm is now quite close to the level of SAT solving, and hence is clearly practically feasible.
Cite as

Wietze Koops, Daniel Le Berre, Magnus O. Myreen, Jakob Nordström, Andy Oertel, Yong Kiam Tan, and Marc Vinyals. Practically Feasible Proof Logging for Pseudo-Boolean Optimization. In 31st International Conference on Principles and Practice of Constraint Programming (CP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 340, pp. 21:1-21:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{koops_et_al:LIPIcs.CP.2025.21,
  author =	{Koops, Wietze and Le Berre, Daniel and Myreen, Magnus O. and Nordstr\"{o}m, Jakob and Oertel, Andy and Tan, Yong Kiam and Vinyals, Marc},
  title =	{{Practically Feasible Proof Logging for Pseudo-Boolean Optimization}},
  booktitle =	{31st International Conference on Principles and Practice of Constraint Programming (CP 2025)},
  pages =	{21:1--21:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-380-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{340},
  editor =	{de la Banda, Maria Garcia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CP.2025.21},
  URN =		{urn:nbn:de:0030-drops-238825},
  doi =		{10.4230/LIPIcs.CP.2025.21},
  annote =	{Keywords: proof logging, certifying algorithms, combinatorial optimization, certification, pseudo-Boolean solving, 0-1 integer linear programming}
}
Document
DOI: 10.4230/OASIcs.SLATE.2025.13
Mining GitHub Software Repositories to Look for Programming Language Cocktails

Authors: João Loureiro, Alvaro Costa Neto, Maria João Varanda Pereira, and Pedro Rangel Henriques

Published in: OASIcs, Volume 135, 14th Symposium on Languages, Applications and Technologies (SLATE 2025)

Abstract
In light of specific development needs, it is common to concurrently apply different technologies to build complex applications. Given that lowering risks, costs, and other negative factors, while improving their positive counterparts is paramount to a better development environment, it becomes relevant to find out what technologies work best for each intended purpose in a project. In order to reach these findings, it is necessary to analyse and study the technologies applied in these projects and how they interconnect and relate to each other. The theory behind Programming Cocktails (meaning the set of programming technologies - Ingredients - that are used to develop complex systems) can support these analysis. However, due to the sheer amount of data that is required to construct and analyse these Cocktails, it becomes unsustainable to manually obtain them. From the desire to accelerate this process comes the need for a tool that automates the data collection and its conversion into an appropriate format for analysis. As such, the project proposed in this paper revolves around the development of a web-scraping application that can generate Cocktail Identity Cards (CIC) from source code repositories hosted on GitHub. Said CICs contain the Ingredients (programming languages, libraries and frameworks) used in the corresponding GitHub repository and follow the ontology previously established in a larger research project to model each Programming Cocktail. This paper presents a survey of current Source Version Control Systems (SVCSs) and web-scrapping technologies, an overview of Programming Cocktails and its current foundations, and the design of a tool that can automate the gathering of CICs from GitHub repositories.
Cite as

João Loureiro, Alvaro Costa Neto, Maria João Varanda Pereira, and Pedro Rangel Henriques. Mining GitHub Software Repositories to Look for Programming Language Cocktails. In 14th Symposium on Languages, Applications and Technologies (SLATE 2025). Open Access Series in Informatics (OASIcs), Volume 135, pp. 13:1-13:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{loureiro_et_al:OASIcs.SLATE.2025.13,
  author =	{Loureiro, Jo\~{a}o and Costa Neto, Alvaro and Pereira, Maria Jo\~{a}o Varanda and Henriques, Pedro Rangel},
  title =	{{Mining GitHub Software Repositories to Look for Programming Language Cocktails}},
  booktitle =	{14th Symposium on Languages, Applications and Technologies (SLATE 2025)},
  pages =	{13:1--13:16},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-387-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{135},
  editor =	{Baptista, Jorge and Barateiro, Jos\'{e}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SLATE.2025.13},
  URN =		{urn:nbn:de:0030-drops-236933},
  doi =		{10.4230/OASIcs.SLATE.2025.13},
  annote =	{Keywords: Software Repository Mining, Source Version Control, GitHub Scraping, Programming Cocktails}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.48
Improved Streaming Edge Coloring

Authors: Shiri Chechik, Hongyi Chen, and Tianyi Zhang

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Given a graph, an edge coloring assigns colors to edges so that no pairs of adjacent edges share the same color. We are interested in edge coloring algorithms under the W-streaming model. In this model, the algorithm does not have enough memory to hold the entire graph, so the edges of the input graph are read from a data stream one by one in an unknown order, and the algorithm needs to print a valid edge coloring in an output stream. The performance of the algorithm is measured by the amount of space and the number of different colors it uses. This streaming edge coloring problem has been studied by several works in recent years. When the input graph contains n vertices and has maximum vertex degree Δ, it is known that in the W-streaming model, an O(Δ²)-edge coloring can be computed deterministically with Õ(n) space [Ansari, Saneian, and Zarrabi-Zadeh, 2022], or an O(Δ^{1.5})-edge coloring can be computed by a Õ(n)-space randomized algorithm [Behnezhad, Saneian, 2024] [Chechik, Mukhtar, Zhang, 2024]. In this paper, we achieve polynomial improvement over previous results. Specifically, we show how to improve the number of colors to Õ(Δ^{4/3+ε}) using space Õ(n) deterministically, for any constant ε > 0. This is the first deterministic result that bypasses the quadratic bound on the number of colors while using near-linear space.
Cite as

Shiri Chechik, Hongyi Chen, and Tianyi Zhang. Improved Streaming Edge Coloring. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 48:1-48:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chechik_et_al:LIPIcs.ICALP.2025.48,
  author =	{Chechik, Shiri and Chen, Hongyi and Zhang, Tianyi},
  title =	{{Improved Streaming Edge Coloring}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{48:1--48:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.48},
  URN =		{urn:nbn:de:0030-drops-234257},
  doi =		{10.4230/LIPIcs.ICALP.2025.48},
  annote =	{Keywords: edge coloring, streaming}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.62
Deterministic k-Median Clustering in Near-Optimal Time

Authors: Martín Costa and Ermiya Farokhnejad

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
The metric k-median problem is a textbook clustering problem. As input, we are given a metric space V of size n and an integer k, and our task is to find a subset S ⊆ V of at most k "centers" that minimizes the total distance from each point in V to its nearest center in S. Mettu and Plaxton [UAI'02] gave a randomized algorithm for k-median that computes a O(1)-approximation in Õ(nk) time. They also showed that any algorithm for this problem with a bounded approximation ratio must have a running time of Ω(nk). Thus, the running time of their algorithm is optimal up to polylogarithmic factors. For deterministic k-median, Guha et al. [FOCS'00] gave an algorithm that computes a poly(log (n/k))-approximation in Õ(nk) time, where the degree of the polynomial in the approximation is unspecified. To the best of our knowledge, this remains the state-of-the-art approximation of any deterministic k-median algorithm with this running time. This leads us to the following natural question: What is the best approximation of a deterministic k-median algorithm with near-optimal running time? We make progress in answering this question by giving a deterministic algorithm that computes a O(log(n/k))-approximation in Õ(nk) time. We also provide a lower bound showing that any deterministic algorithm with this running time must have an approximation ratio of Ω(log n/(log k + log log n)), establishing a gap between the randomized and deterministic settings for k-median.
Cite as

Martín Costa and Ermiya Farokhnejad. Deterministic k-Median Clustering in Near-Optimal Time. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 62:1-62:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{costa_et_al:LIPIcs.ICALP.2025.62,
  author =	{Costa, Mart{\'\i}n and Farokhnejad, Ermiya},
  title =	{{Deterministic k-Median Clustering in Near-Optimal Time}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{62:1--62:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.62},
  URN =		{urn:nbn:de:0030-drops-234395},
  doi =		{10.4230/LIPIcs.ICALP.2025.62},
  annote =	{Keywords: k-clustering, k-median, deterministic algorithms, approximation algorithms}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.90
Revisiting Directed Disjoint Paths on Tournaments (And Relatives)

Authors: Guilherme de C. M. Gomes, Raul Lopes, and Ignasi Sau

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
In the Directed Disjoint Paths problem (k-DDP), we are given a digraph and k pairs of terminals, and the goal is to find k pairwise vertex-disjoint paths connecting each pair of terminals. Bang-Jensen and Thomassen [SIAM J. Discrete Math. 1992] claimed that k-DDP is NP-complete on tournaments, and this result triggered a very active line of research about the complexity of the problem on tournaments and natural superclasses. We identify a flaw in their proof, which has been acknowledged by the authors, and provide a new NP-completeness proof. From an algorithmic point of view, Fomin and Pilipczuk [J. Comb. Theory B 2019] provided an FPT algorithm for the edge-disjoint version of the problem on semicomplete digraphs, and showed that their technique cannot work for the vertex-disjoint version. We overcome this obstacle by showing that the version of k-DDP where we allow congestion c on the vertices is FPT on semicomplete digraphs provided that c is greater than k/2. This is based on a quite elaborate irrelevant vertex argument inspired by the edge-disjoint version, and we show that our choice of c is best possible for this technique, with a counterexample with no irrelevant vertices when c ≤ k/2. We also prove that k-DDP on digraphs that can be partitioned into h semicomplete digraphs is W[1]-hard parameterized by k+h, which shows that the XP algorithm presented by Chudnovsky, Scott, and Seymour [J. Comb. Theory B 2019] is essentially optimal.
Cite as

Guilherme de C. M. Gomes, Raul Lopes, and Ignasi Sau. Revisiting Directed Disjoint Paths on Tournaments (And Relatives). In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 90:1-90:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dec.m.gomes_et_al:LIPIcs.ICALP.2025.90,
  author =	{de C. M. Gomes, Guilherme and Lopes, Raul and Sau, Ignasi},
  title =	{{Revisiting Directed Disjoint Paths on Tournaments (And Relatives)}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{90:1--90:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.90},
  URN =		{urn:nbn:de:0030-drops-234678},
  doi =		{10.4230/LIPIcs.ICALP.2025.90},
  annote =	{Keywords: directed graphs, tournaments, semicomplete digraphs, directed disjoint paths, congestion, parameterized complexity, directed pathwidth}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2025.143
Density of Rational Languages Under Shift Invariant Measures

Authors: Valérie Berthé, Herman Goulet-Ouellet, and Dominique Perrin

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We study density of rational languages under shift invariant probability measures on spaces of two-sided infinite words, which generalizes the classical notion of density studied in formal languages and automata theory. The density for a language is defined as the limit in average (if it exists) of the probability that a word of a given length belongs to the language. We establish the existence of densities for all rational languages under all shift invariant measures. We also give explicit formulas under certain conditions, in particular when the language is aperiodic. Our approach combines tools and ideas from semigroup theory and ergodic theory.
Cite as

Valérie Berthé, Herman Goulet-Ouellet, and Dominique Perrin. Density of Rational Languages Under Shift Invariant Measures. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 143:1-143:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{berthe_et_al:LIPIcs.ICALP.2025.143,
  author =	{Berth\'{e}, Val\'{e}rie and Goulet-Ouellet, Herman and Perrin, Dominique},
  title =	{{Density of Rational Languages Under Shift Invariant Measures}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{143:1--143:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.143},
  URN =		{urn:nbn:de:0030-drops-235203},
  doi =		{10.4230/LIPIcs.ICALP.2025.143},
  annote =	{Keywords: Automata theory, Symbolic dynamics, Semigroup theory, Ergodic theory}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
Position
DOI: 10.4230/TGDK.1.1.2
Large Language Models and Knowledge Graphs: Opportunities and Challenges

Authors: Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Large Language Models (LLMs) have taken Knowledge Representation - and the world - by storm. This inflection point marks a shift from explicit knowledge representation to a renewed focus on the hybrid representation of both explicit knowledge and parametric knowledge. In this position paper, we will discuss some of the common debate points within the community on LLMs (parametric knowledge) and Knowledge Graphs (explicit knowledge) and speculate on opportunities and visions that the renewed focus brings, as well as related research topics and challenges.
Cite as

Jeff Z. Pan, Simon Razniewski, Jan-Christoph Kalo, Sneha Singhania, Jiaoyan Chen, Stefan Dietze, Hajira Jabeen, Janna Omeliyanenko, Wen Zhang, Matteo Lissandrini, Russa Biswas, Gerard de Melo, Angela Bonifati, Edlira Vakaj, Mauro Dragoni, and Damien Graux. Large Language Models and Knowledge Graphs: Opportunities and Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 2:1-2:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{pan_et_al:TGDK.1.1.2,
  author =	{Pan, Jeff Z. and Razniewski, Simon and Kalo, Jan-Christoph and Singhania, Sneha and Chen, Jiaoyan and Dietze, Stefan and Jabeen, Hajira and Omeliyanenko, Janna and Zhang, Wen and Lissandrini, Matteo and Biswas, Russa and de Melo, Gerard and Bonifati, Angela and Vakaj, Edlira and Dragoni, Mauro and Graux, Damien},
  title =	{{Large Language Models and Knowledge Graphs: Opportunities and Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:38},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.2},
  URN =		{urn:nbn:de:0030-drops-194766},
  doi =		{10.4230/TGDK.1.1.2},
  annote =	{Keywords: Large Language Models, Pre-trained Language Models, Knowledge Graphs, Ontology, Retrieval Augmented Language Models}
}
Document
DOI: 10.4230/OASIcs.Tokenomics.2020.6
VeriOSS: Using the Blockchain to Foster Bug Bounty Programs

Authors: Andrea Canidio, Gabriele Costa, and Letterio Galletta

Published in: OASIcs, Volume 82, 2nd International Conference on Blockchain Economics, Security and Protocols (Tokenomics 2020)

Abstract
Nowadays software is everywhere and this is particularly true for free and open source software (FOSS). Discovering bugs in FOSS projects is of paramount importance and many bug bounty programs attempt to attract skilled analysts by promising rewards. Nevertheless, developing an effective bug bounty program is challenging. As a consequence, many programs fail to support an efficient and fair bug bounty market. In this paper, we present VeriOSS, a novel bug bounty platform. The idea behind VeriOSS is to exploit the blockchain technology to develop a fair and efficient bug bounty market. To this aim, VeriOSS combines formal guarantees and economic incentives to ensure that the bug disclosure is both reliable and convenient for the market actors.
Cite as

Andrea Canidio, Gabriele Costa, and Letterio Galletta. VeriOSS: Using the Blockchain to Foster Bug Bounty Programs. In 2nd International Conference on Blockchain Economics, Security and Protocols (Tokenomics 2020). Open Access Series in Informatics (OASIcs), Volume 82, pp. 6:1-6:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{canidio_et_al:OASIcs.Tokenomics.2020.6,
  author =	{Canidio, Andrea and Costa, Gabriele and Galletta, Letterio},
  title =	{{VeriOSS: Using the Blockchain to Foster Bug Bounty Programs}},
  booktitle =	{2nd International Conference on Blockchain Economics, Security and Protocols (Tokenomics 2020)},
  pages =	{6:1--6:14},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-157-3},
  ISSN =	{2190-6807},
  year =	{2021},
  volume =	{82},
  editor =	{Anceaume, Emmanuelle and Bisi\`{e}re, Christophe and Bouvard, Matthieu and Bramas, Quentin and Casamatta, Catherine},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Tokenomics.2020.6},
  URN =		{urn:nbn:de:0030-drops-135286},
  doi =		{10.4230/OASIcs.Tokenomics.2020.6},
  annote =	{Keywords: Bug Bounty, Decentralized platforms, Symbolic-reverse debugging}
}
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