8 Search Results for "Uhlmann, Johannes"

Document
DOI: 10.4230/LIPIcs.STACS.2026.53
Maximum Reachability Orientation of Mixed Graphs

Authors: Florian Hörsch

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
We aim to find orientations of mixed graphs optimizing the total reachability, a problem that has applications in causality and biology. For given a digraph D, we use P(D) for the set of ordered pairs of distinct vertices in V(D) and we define κ_D:P(D) → {0,1} by κ_D(u,v) = 1 if v is reachable from u in D, and κ_D(u,v) = 0, otherwise. We use R(D) = ∑_{(u,v) ∈ P(D)}κ_D(u,v). Now, given a mixed graph G, we aim to find an orientation x⃑{G} of G that maximizes R(x⃑{G}). Hakimi, Schmeichel, and Young proved that the problem can be solved in polynomial time when restricted to undirected inputs. They inquired about the complexity in mixed graphs. We answer this question by showing that this problem is NP-hard, and, moreover, APX-hard. We then develop a finer understanding of how quickly the problem becomes difficult when going from undirected to mixed graphs. To this end, we consider the parameterized complexity of the problem with respect to the number k of preoriented arcs of G, a poorly studied form of parameterization. We show that the problem can be solved in time n^{O(k)} and that a (1-ε)-approximation can be computed in time f(k,ε)n^{O(1)} for any ε > 0.
Cite as

Florian Hörsch. Maximum Reachability Orientation of Mixed Graphs. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 53:1-53:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{horsch:LIPIcs.STACS.2026.53,
  author =	{H\"{o}rsch, Florian},
  title =	{{Maximum Reachability Orientation of Mixed Graphs}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{53:1--53:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.53},
  URN =		{urn:nbn:de:0030-drops-255421},
  doi =		{10.4230/LIPIcs.STACS.2026.53},
  annote =	{Keywords: orientations, mixed graphs, reachability, parameterized complexity, approximation}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.38
Structural Parameters for Steiner Orientation

Authors: Tesshu Hanaka, Michael Lampis, Nikolaos Melissinos, Edouard Nemery, Hirotaka Ono, and Manolis Vasilakis

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We consider the Steiner Orientation problem, where we are given as input a mixed graph G = (V,E,A) and a set of k demand pairs (s_i,t_i), i ∈ [k]. The goal is to orient the undirected edges of G in a way that the resulting directed graph has a directed path from s_i to t_i for all i ∈ [k]. We adopt the point of view of structural parameterized complexity and investigate the complexity of Steiner Orientation for standard measures, such as treewidth. Our results indicate that Steiner Orientation is a surprisingly hard problem from this point of view. In particular, our main contributions are the following: 1) We show that Steiner Orientation is NP-complete on instances where the underlying graph has feedback vertex number 2, treewidth 2, pathwidth 3, and vertex integrity 6. 2) We present an XP algorithm parameterized by vertex cover number vc of complexity n^O(vc²). Furthermore, we show that this running time is essentially optimal by proving that a running time of n^o(vc²) would refute the ETH. 3) We consider parameterizations by the number of undirected or directed edges (|E| or |A|) and we observe that the trivial 2^|E| n^O(1)-time algorithm for the former parameter is optimal under the SETH. Complementing this, we show that the problem admits a 2^O(|A|) n^O(1)-time algorithm. In addition to the above, we consider the complexity of Steiner Orientation parameterized by tw+k (FPT), distance to clique (FPT), and vc+k (FPT with a polynomial kernel).
Cite as

Tesshu Hanaka, Michael Lampis, Nikolaos Melissinos, Edouard Nemery, Hirotaka Ono, and Manolis Vasilakis. Structural Parameters for Steiner Orientation. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 38:1-38:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hanaka_et_al:LIPIcs.ISAAC.2025.38,
  author =	{Hanaka, Tesshu and Lampis, Michael and Melissinos, Nikolaos and Nemery, Edouard and Ono, Hirotaka and Vasilakis, Manolis},
  title =	{{Structural Parameters for Steiner Orientation}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{38:1--38:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.38},
  URN =		{urn:nbn:de:0030-drops-249461},
  doi =		{10.4230/LIPIcs.ISAAC.2025.38},
  annote =	{Keywords: ETH, Steiner Orientation, Treewidth}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.48
Quadratic Kernel for Cliques or Trees Vertex Deletion

Authors: Soh Kumabe

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
We consider Cliques or Trees Vertex Deletion, which is a hybrid of two fundamental parameterized problems: Cluster Vertex Deletion and Feedback Vertex Set. In this problem, we are given an undirected graph G and an integer k, and asked to find a vertex subset X of size at most k such that each connected component of G-X is either a clique or a tree. Jacob et al. (ISAAC, 2024) provided a kernel of O(k⁵) vertices for this problem, which was recently improved to O(k⁴) by Tsur (IPL, 2025). Our main result is a kernel of O(k²) vertices. This result closes the gap between the kernelization result for Feedback Vertex Set, which corresponds to the case where each connected component of G-X must be a tree. Although both cluster vertex deletion number and feedback vertex set number are well-studied structural parameters, little attention has been given to parameters that generalize both of them. In fact, the lowest common well-known generalization of them is clique-width, which is a highly general parameter. To fill the gap here, we initiate the study of the cliques or trees vertex deletion number as a structural parameter. We prove that Longest Cycle, which is a fundamental problem that does not admit o(n^k)-time algorithm unless ETH fails when k is the clique-width, becomes fixed-parameter tractable when parameterized by the cliques or trees vertex deletion number.
Cite as

Soh Kumabe. Quadratic Kernel for Cliques or Trees Vertex Deletion. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 48:1-48:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kumabe:LIPIcs.ISAAC.2025.48,
  author =	{Kumabe, Soh},
  title =	{{Quadratic Kernel for Cliques or Trees Vertex Deletion}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{48:1--48:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.48},
  URN =		{urn:nbn:de:0030-drops-249568},
  doi =		{10.4230/LIPIcs.ISAAC.2025.48},
  annote =	{Keywords: Fixed-Parameter Tractability, Kernelization, Deletion to Scattered Graph Classes, Cluster Vertex Deletion, Feedback Vertex Set}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.105
Parameterized Algorithms for Computing Pareto Sets

Authors: Joshua Marc Könen, Heiko Röglin, and Tarek Stuck

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
The problem of computing the set of Pareto-optimal solutions has been studied for a variety of multiobjective optimization problems. For many such problems, algorithms are known that compute the Pareto set in (weak) output-polynomial time. These algorithms are often based on dynamic programming and by weak output-polynomial time, we mean that the running time depends polynomially on the size of the Pareto set but also on the sizes of the Pareto sets of the subproblems that occur in the dynamic program. For some problems, like the multiobjective minimum spanning tree problem, such algorithms are not known to exist and for other problems, like multiobjective versions of many NP-hard problems, such algorithms cannot exist, unless 𝒫 = 𝒩𝒫. Dynamic programming over tree decompositions is a common technique in parameterized algorithms. In this paper, we study whether this technique can also be applied to compute Pareto sets of multiobjective optimization problems. We first derive an algorithm to compute the Pareto set for the multicriteria s-t cut problem and show how this result can be applied to a polygon aggregation problem arising in cartography that has recently been introduced by Rottmann et al. (GIScience 2021). We also show how to apply these techniques to also compute the Pareto set of the multiobjective minimum spanning tree problem and for the multiobjective TSP. The running time of our algorithms is O(f(w)⋅poly(n,p_{max})), where f is some function in the treewidth w, n is the input size, and p_{max} is an upper bound on the size of the Pareto sets of the subproblems that occur in the dynamic program. Finally, we present an experimental evaluation of computing Pareto sets on real-world instances of polygon aggregation problems. For this matter we devised a task-specific data structure that allows for efficient storage and modification of large sets of Pareto-optimal solutions. Throughout the implementation process, we incorporated several improved strategies and heuristics that significantly reduced both runtime and memory usage, enabling us to solve instances with treewidth of up to 22 within reasonable amount of time. Moreover, we conducted a preprocessing study to compare different tree decompositions in terms of their estimated overall runtime.
Cite as

Joshua Marc Könen, Heiko Röglin, and Tarek Stuck. Parameterized Algorithms for Computing Pareto Sets. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 105:1-105:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{konen_et_al:LIPIcs.ESA.2025.105,
  author =	{K\"{o}nen, Joshua Marc and R\"{o}glin, Heiko and Stuck, Tarek},
  title =	{{Parameterized Algorithms for Computing Pareto Sets}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{105:1--105:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.105},
  URN =		{urn:nbn:de:0030-drops-245749},
  doi =		{10.4230/LIPIcs.ESA.2025.105},
  annote =	{Keywords: parameterized algorithms, treewidth, multicriteria optimization problems, multicriteria MST, multicriteria TSP, polygon aggregation}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.90
Elimination Distance to Dominated Clusters

Authors: Nicole Schirrmacher, Sebastian Siebertz, and Alexandre Vigny

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
In the Dominated Cluster Deletion problem, we are given an undirected graph G and integers k and d and the question is to decide whether there exists a set of at most k vertices whose removal results in a graph in which each connected component has a dominating set of size at most d. In the Elimination Distance to Dominated Clusters problem, we are again given an undirected graph G and integers k and d and the question is to decide whether we can recursively delete vertices up to depth k such that each remaining connected component has a dominating set of size at most d. Bentert et al. [Bentert et al., MFCS 2024] recently provided an almost complete classification of the parameterized complexity of Dominated Cluster Deletion with respect to the parameters k, d, c, and Δ, where c and Δ are the degeneracy, and the maximum degree of the input graph, respectively. In particular, they provided a non-uniform algorithm with running time f(k,d)⋅ n^{𝒪(d)}. They left as an open problem whether the problem is fixed-parameter tractable with respect to the parameter k + d + c. We provide a uniform algorithm running in time f(k,d)⋅ n^{𝒪(d)} for both Dominated Cluster Deletion and Elimination Distance to Dominated Clusters. We furthermore show that both problems are FPT when parameterized by k+d+𝓁, where 𝓁 is the semi-ladder index of the input graph, a parameter that is upper bounded and may be much smaller than the degeneracy c, positively answering the open question of Bentert et al. We further complete the picture by providing an almost full classification for the parameterized complexity and kernelization complexity of Elimination Distance to Dominated Clusters. The one difficult base case that remains open is whether Treedepth (the case d = 0) is NP-hard on graphs of bounded maximum degree.
Cite as

Nicole Schirrmacher, Sebastian Siebertz, and Alexandre Vigny. Elimination Distance to Dominated Clusters. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 90:1-90:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{schirrmacher_et_al:LIPIcs.MFCS.2025.90,
  author =	{Schirrmacher, Nicole and Siebertz, Sebastian and Vigny, Alexandre},
  title =	{{Elimination Distance to Dominated Clusters}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{90:1--90:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.90},
  URN =		{urn:nbn:de:0030-drops-241978},
  doi =		{10.4230/LIPIcs.MFCS.2025.90},
  annote =	{Keywords: Graph theory, Fixed-parameter algorithms, Dominated cluster, Elimination distance}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.20
Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components

Authors: Sriram Bhyravarapu, Pritesh Kumar, Madhumita Kundu, Shivesh K. Roy, Sahiba, and Saket Saurabh

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Motivated by the growing interest in graph clustering and the framework proposed during the Dagstuhl Seminar 23331, we consider a natural specialization of this general approach (as also suggested during the seminar). The seminar introduced a broad perspective on clustering, where the goal is to partition a graph into connected components (or "clusters") that satisfy simple structural integrity constraints - not necessarily limited to cliques. In our work, we focus on the case where each cluster is required to have bounded vertex cover number. Specifically, a connected component C satisfies this condition if there exists a set S ⊆ V(C) with |S| ≤ d such that C - S is an independent set. We study this within the framework of the {Vertex Deletion to d-Vertex Cover Components} ({Vertex Deletion to d-VCC}) problem: given a graph G and an integer k, the task is to determine whether there exists a vertex set S ⊆ V(G) of size at most k such that every connected component of G - S has vertex cover number at most d. We also examine the edge-deletion variant, {Edge Deletion to d-Vertex Cover Components} ({Edge Deletion to d-VCC}), where the goal is to delete at most k edges so that each connected component of the resulting graph has vertex cover number at most d. We obtain following results. 1) {Vertex Deletion to d-VCC} admits a kernel with {𝒪}(d⁶k³) vertices and {𝒪}(d⁹k⁴) edges. 2) {Edge Deletion to d-VCC}, admits a kernel with {𝒪}(d⁴k) vertices and {𝒪}(d⁵k) edges. Both of our kernelization algorithms run in time 𝒪(1.253^d ⋅ (kd)^{𝒪(1)} ⋅ n log n). It is important to note that, unless the Exponential Time Hypothesis (ETH) fails, the dependence on d cannot be improved to 2^{o(d)}, as the case k = 0 reduces to solving the classical Vertex Cover problem, which is known to require 2^{Ω(d)} time under ETH. A key ingredient in our kernelization algorithms is a structural result about the hereditary graph class 𝒢_d, consisting of graphs in which every connected component has vertex cover number at most d. We show that 𝒢_d admits a finite obstruction set (with respect to the induced subgraph relation) of size 2^{𝒪(d²)}, where each obstruction graph has at most 3d + 2 vertices. This combinatorial result may be of independent interest.
Cite as

Sriram Bhyravarapu, Pritesh Kumar, Madhumita Kundu, Shivesh K. Roy, Sahiba, and Saket Saurabh. Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 20:1-20:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bhyravarapu_et_al:LIPIcs.MFCS.2025.20,
  author =	{Bhyravarapu, Sriram and Kumar, Pritesh and Kundu, Madhumita and Roy, Shivesh K. and Sahiba and Saurabh, Saket},
  title =	{{Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{20:1--20:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.20},
  URN =		{urn:nbn:de:0030-drops-241276},
  doi =		{10.4230/LIPIcs.MFCS.2025.20},
  annote =	{Keywords: Parameterized complexity, Polynomial Kernels, Vertex Cover, Finite Forbidden Characterization}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.64
Cluster Editing on Cographs and Related Classes

Authors: Manuel Lafond, Alitzel López Sánchez, and Weidong Luo

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
In the Cluster Editing problem, sometimes known as (unweighted) Correlation Clustering, we must insert and delete a minimum number of edges to achieve a graph in which every connected component is a clique. Owing to its applications in computational biology, social network analysis, machine learning, and others, this problem has been widely studied for decades and is still undergoing active research. There exist several parameterized algorithms for general graphs, but little is known about the complexity of the problem on specific classes of graphs. Among the few important results in this direction, if only deletions are allowed, the problem can be solved in polynomial time on cographs, which are the P₄-free graphs. However, the complexity of the broader editing problem on cographs is still open. We show that even on a very restricted subclass of cographs, the problem is NP-hard, W[1]-hard when parameterized by the number p of desired clusters, and that time n^o(p/log p) is forbidden under the ETH. This shows that the editing variant is substantially harder than the deletion-only case, and that hardness holds for the many superclasses of cographs (including graphs of clique-width at most 2, perfect graphs, circle graphs, permutation graphs). On the other hand, we provide an almost tight upper bound of time n^O(p), which is a consequence of a more general n^O(cw⋅p) time algorithm, where cw is the clique-width. Given that forbidding P₄s maintains NP-hardness, we look at {P₄, C₄}-free graphs, also known as trivially perfect graphs, and provide a cubic-time algorithm for this class.
Cite as

Manuel Lafond, Alitzel López Sánchez, and Weidong Luo. Cluster Editing on Cographs and Related Classes. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 64:1-64:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lafond_et_al:LIPIcs.STACS.2025.64,
  author =	{Lafond, Manuel and L\'{o}pez S\'{a}nchez, Alitzel and Luo, Weidong},
  title =	{{Cluster Editing on Cographs and Related Classes}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{64:1--64:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.64},
  URN =		{urn:nbn:de:0030-drops-228895},
  doi =		{10.4230/LIPIcs.STACS.2025.64},
  annote =	{Keywords: Cluster editing, cographs, parameterized algorithms, clique-width, trivially perfect graphs}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2008.1760
A Cubic-Vertex Kernel for Flip Consensus Tree

Authors: Christian Komusiewicz and Johannes Uhlmann

Published in: LIPIcs, Volume 2, IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (2008)

Abstract
Given a bipartite graph G=(V_c,V_t,E) and a non-negative integer k, the NP-complete Minimum-Flip Consensus Tree problem asks whether G can be transformed, using up to k edge insertions and deletions, into a graph that does not contain an induced P_5 with its first vertex in V_t (a so-called M-graph or Sigma-graph). This problem plays an important role in computational phylogenetics, V_c standing for the characters and V_t standing for taxa. Chen et al. [IEEE/ACM TCBB 2006] showed that Minimum-Flip Consensus Tree is NP-complete and presented a parameterized algorithm with running time O(6^k\cdot |V_t|\cdot |V_c|). Recently, Boecker et al. [IWPEC'08] presented a refined search tree algorithm with running time O(4.83^k(|V_t|+|V_c|) + |V_t|\cdot |V_c|). We complement these results by polynomial-time executable data reduction rules yielding a problem kernel with O(k^3) vertices.
Cite as

Christian Komusiewicz and Johannes Uhlmann. A Cubic-Vertex Kernel for Flip Consensus Tree. In IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science. Leibniz International Proceedings in Informatics (LIPIcs), Volume 2, pp. 280-291, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)

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@InProceedings{komusiewicz_et_al:LIPIcs.FSTTCS.2008.1760,
  author =	{Komusiewicz, Christian and Uhlmann, Johannes},
  title =	{{A Cubic-Vertex Kernel for Flip Consensus Tree}},
  booktitle =	{IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science},
  pages =	{280--291},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-939897-08-8},
  ISSN =	{1868-8969},
  year =	{2008},
  volume =	{2},
  editor =	{Hariharan, Ramesh and Mukund, Madhavan and Vinay, V},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2008.1760},
  URN =		{urn:nbn:de:0030-drops-17600},
  doi =		{10.4230/LIPIcs.FSTTCS.2008.1760},
  annote =	{Keywords: Fixed-parameter algorithm, problem kernel, NP-hard problem, graph modification problem, computational phylogenetics}
}
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  • 1 Mathematics of computing → Combinatorial algorithms
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  • 2 parameterized algorithms
  • 1 Cluster Vertex Deletion
  • 1 Cluster editing
  • 1 Deletion to Scattered Graph Classes
  • 1 Dominated cluster
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