14 Search Results for "Bell, Jonathan"

Document
DOI: 10.4230/LIPIcs.ESA.2025.37
Hardness of Computation of Quantum Invariants on 3-Manifolds with Restricted Topology

Authors: Henrique Ennes and Clément Maria

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Quantum invariants in low-dimensional topology offer a wide variety of valuable invariants about knots and 3-manifolds, presented by explicit formulas that are readily computable. Their computational complexity has been actively studied and is tightly connected to topological quantum computing. In this article, we prove that for any 3-manifold quantum invariant in the Reshetikhin-Turaev model, there is a deterministic polynomial time algorithm that, given as input an arbitrary closed 3-manifold M, outputs a closed 3-manifold M' with the same quantum invariant, such that M' is hyperbolic, contains no low genus embedded incompressible surface, and is presented by a strongly irreducible Heegaard diagram. Our construction relies on properties of Heegaard splittings and the Hempel distance. At the level of computational complexity, this proves that the hardness of computing a given quantum invariant of 3-manifolds is preserved even when severely restricting the topology and the combinatorics of the input. This positively answers a question raised by Samperton [Samperton, 2023].
Cite as

Henrique Ennes and Clément Maria. Hardness of Computation of Quantum Invariants on 3-Manifolds with Restricted Topology. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 37:1-37:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ennes_et_al:LIPIcs.ESA.2025.37,
  author =	{Ennes, Henrique and Maria, Cl\'{e}ment},
  title =	{{Hardness of Computation of Quantum Invariants on 3-Manifolds with Restricted Topology}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{37:1--37:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.37},
  URN =		{urn:nbn:de:0030-drops-245057},
  doi =		{10.4230/LIPIcs.ESA.2025.37},
  annote =	{Keywords: 3-manifold, Heegaard splitting, Hempel distance, Quantum invariant, polynomial time reduction}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.30
A Research Framework to Develop a Real-Time Synchrony Index to Monitor Team Cohesion and Performance in Long-Duration Space Exploration

Authors: Federico Nemmi, Emma Chabani, Laure Boyer, Charlie Madier, and Daniel Lewkowicz

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
As humanity prepares for long-distance space exploration, optimizing group performance, the ability of a group to achieve its goals efficiently, is critical. Astronaut crews will endure isolation, confinement, and operational stress, making group synchrony - the alignment of behaviors, emotions, and physiological states - a key factor in mission success. Synchrony influences team cohesion, performance, and resilience, necessitating effective crew management strategies. This paper proposes a framework for a real-time, unobtrusive index of group synchrony to support astronauts and mission control. Research indicates that team cohesion fluctuates in isolated environments, with reduced communication and interpersonal conflicts emerging over time. A system tracking synchrony could mitigate these issues, providing proactive support and improving remote management. Additionally, it could serve as a cognitive and physiological feedback tool for astronauts and a decision-making aid for mission control, enhancing well-being and efficiency. Our approach integrates behavioral and physiological synchrony measures to assess team cohesion and performance. We propose a multi-modal synchrony index combining movement coordination, communication patterns, and physiological signals such as heart rate, electrodermal activity, and EEG. This index will be validated across different tasks to ensure applicability across diverse mission scenarios. By developing a robust synchrony index, we address a fundamental challenge in space missions: sustaining team effectiveness under extreme conditions. Beyond space exploration, our findings could benefit high-risk, high-isolation teams in submarine crews, polar expeditions, and remote research groups. Our collaboration with the Centre National d'Etudes Spatiales, the Institut de Médecine et de Physiologie Spatiales, and the Toulouse University Hospital marks the first step, with experimental data collection starting this year. Ultimately, this research fosters more adaptive, responsive, and resilient teams for future space missions.
Cite as

Federico Nemmi, Emma Chabani, Laure Boyer, Charlie Madier, and Daniel Lewkowicz. A Research Framework to Develop a Real-Time Synchrony Index to Monitor Team Cohesion and Performance in Long-Duration Space Exploration. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 30:1-30:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{nemmi_et_al:OASIcs.SpaceCHI.2025.30,
  author =	{Nemmi, Federico and Chabani, Emma and Boyer, Laure and Madier, Charlie and Lewkowicz, Daniel},
  title =	{{A Research Framework to Develop a Real-Time Synchrony Index to Monitor Team Cohesion and Performance in Long-Duration Space Exploration}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{30:1--30:16},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.30},
  URN =		{urn:nbn:de:0030-drops-240200},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.30},
  annote =	{Keywords: Performance, Synchronie, Crew monitoring, Cohesion}
}
Document
DOI: 10.4230/OASIcs.Programming.2025.23
The Pyttern Program Query Language

Authors: Julien Liénard, Kim Mens, and Siegfried Nijssen

Published in: OASIcs, Volume 134, Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)

Abstract
Despite the availability of numerous tools and languages for detecting structural patterns in programs, their complexity often presents a steep learning curve. This highlights the need for a program query language that is easier to learn, use, and read while remaining sufficiently expressive for defining and detecting relevant structural coding patterns in program code. To address this challenge, we present Pyttern, a query language that extends Python syntax with regular-expression-inspired wildcards, enabling intuitive pattern-based querying of Python code. Its implementation relies upon a custom pushdown automaton describing how to match patterns over program parse trees, thus providing a robust foundation for structural code analysis. We evaluate Pyttern’s usability and effectiveness through a study involving 35 master’s students, who were asked to write seven different patterns to identify known programming misconceptions. The results demonstrate that Pyttern is both easy to learn and practical to use, at least for analysing small-scale programs.
Cite as

Julien Liénard, Kim Mens, and Siegfried Nijssen. The Pyttern Program Query Language. In Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025). Open Access Series in Informatics (OASIcs), Volume 134, pp. 23:1-23:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lienard_et_al:OASIcs.Programming.2025.23,
  author =	{Li\'{e}nard, Julien and Mens, Kim and Nijssen, Siegfried},
  title =	{{The Pyttern Program Query Language}},
  booktitle =	{Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)},
  pages =	{23:1--23:15},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-382-9},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{134},
  editor =	{Edwards, Jonathan and Perera, Roly and Petricek, Tomas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Programming.2025.23},
  URN =		{urn:nbn:de:0030-drops-243075},
  doi =		{10.4230/OASIcs.Programming.2025.23},
  annote =	{Keywords: Pyttern, Program Query Languages, Python, Pattern Matching, Parse Tree, Pushdown Automaton, Static Code Analysis, Wildcards, Tree Pattern Matching}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.45
Fast Kd-Trees for the Kullback-Leibler Divergence and Other Decomposable Bregman Divergences

Authors: Tuyen Pham and Hubert Wagner

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
The contributions of the paper span theoretical and implementational results. First, we prove that Kd-trees can be extended to ℝ^d with the distance measured by an arbitrary Bregman divergence. Perhaps surprisingly, this shows that the triangle inequality is not necessary for correct pruning in Kd-trees. Second, we offer an efficient algorithm and C++ implementation for nearest neighbour search for decomposable Bregman divergences. The implementation supports the Kullback-Leibler divergence (relative entropy) which is a popular distance between probability vectors and is commonly used in statistics and machine learning. This is a step toward broadening the usage of computational geometry algorithms. Our benchmarks show that our implementation efficiently handles both exact and approximate nearest neighbour queries. Compared to a linear search, we achieve two orders of magnitude speedup for practical scenarios in dimension up to 100. Our solution is simpler and more efficient than competing methods.
Cite as

Tuyen Pham and Hubert Wagner. Fast Kd-Trees for the Kullback-Leibler Divergence and Other Decomposable Bregman Divergences. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 45:1-45:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{pham_et_al:LIPIcs.WADS.2025.45,
  author =	{Pham, Tuyen and Wagner, Hubert},
  title =	{{Fast Kd-Trees for the Kullback-Leibler Divergence and Other Decomposable Bregman Divergences}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{45:1--45:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.45},
  URN =		{urn:nbn:de:0030-drops-242766},
  doi =		{10.4230/LIPIcs.WADS.2025.45},
  annote =	{Keywords: Kd-tree, k-d tree, nearest neighbour search, Bregman divergence, decomposable Bregman divergence, KL divergence, relative entropy, cross entropy, Shannon’s entropy}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.11
Mutational Signature Refitting on Sparse Pan-Cancer Data

Authors: Gal Gilad, Teresa M. Przytycka, and Roded Sharan

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Mutational processes shape cancer genomes, leaving characteristic marks that are termed signatures. The level of activity of each such process, or its signature exposure, provides important information on the disease, improving patient stratification and the prediction of drug response. Thus, there is growing interest in developing refitting methods that decipher those exposures. Previous work in this domain was unsupervised in nature, employing algebraic decomposition and probabilistic inference methods. Here we provide a supervised approach to the problem of signature refitting and show its superiority over current methods. Our method, SuRe, leverages a neural network model to capture correlations between signature exposures in real data. We show that SuRe outperforms previous methods on sparse mutation data from tumor type specific data sets, as well as pan-cancer data sets, with an increasing advantage as the data become sparser. We further demonstrate its utility in clinical settings.
Cite as

Gal Gilad, Teresa M. Przytycka, and Roded Sharan. Mutational Signature Refitting on Sparse Pan-Cancer Data. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 11:1-11:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gilad_et_al:LIPIcs.WABI.2025.11,
  author =	{Gilad, Gal and Przytycka, Teresa M. and Sharan, Roded},
  title =	{{Mutational Signature Refitting on Sparse Pan-Cancer Data}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{11:1--11:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.11},
  URN =		{urn:nbn:de:0030-drops-239374},
  doi =		{10.4230/LIPIcs.WABI.2025.11},
  annote =	{Keywords: mutational signatures, signature refitting, cancer genomics, genomic data analysis, somatic mutations}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.16
A Lightweight Method for Generating Multi-Tier JIT Compilation Virtual Machine in a Meta-Tracing Compiler Framework

Authors: Yusuke Izawa, Hidehiko Masuhara, and Carl Friedrich Bolz-Tereick

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Meta-compiler frameworks, such as RPython and Graal/Truffle, generate high-performance virtual machines (VMs) from interpreter definitions. Although they generate VMs with high-quality just-in-time (JIT) compilers, they still lack an important feature that dedicated VMs (i.e., VMs that are developed for specific languages) have, namely multi-tier compilation. Multi-tier compilation uses light-weight compilers at early stages and highly optimizing compilers at later stages in order to balance between compilation overheads and code quality. We propose a novel approach to enabling multi-tier compilation in the VMs generated by a meta-compiler framework. Instead of extending the JIT compiler backend of the framework, our approach drives an existing (heavyweight) compiler backend in the framework to quickly generate unoptimized native code by merely embedding directives and compile-time operations into interpreter definitions. As a validation of the approach, we developed 2SOM, a Simple Object Machine with a two-tier JIT compiler based on RPython. 2SOM first applies the tier-1 threaded code generator that is generated by our proposed technique, then, to the loops that exceed a threshold, applies the tier-2 tracing JIT compiler that is generated by the original RPython framework. Our performance evaluation that runs a program with a realistic workload showed that 2SOM improved, when compared against an RPython-based VM, warm-up performance by 15%, with merely a 5% reduction in peak performance.
Cite as

Yusuke Izawa, Hidehiko Masuhara, and Carl Friedrich Bolz-Tereick. A Lightweight Method for Generating Multi-Tier JIT Compilation Virtual Machine in a Meta-Tracing Compiler Framework. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 16:1-16:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{izawa_et_al:LIPIcs.ECOOP.2025.16,
  author =	{Izawa, Yusuke and Masuhara, Hidehiko and Bolz-Tereick, Carl Friedrich},
  title =	{{A Lightweight Method for Generating Multi-Tier JIT Compilation Virtual Machine in a Meta-Tracing Compiler Framework}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{16:1--16:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.16},
  URN =		{urn:nbn:de:0030-drops-233090},
  doi =		{10.4230/LIPIcs.ECOOP.2025.16},
  annote =	{Keywords: virtual machine, JIT compiler, multi-tier JIT compiler, meta-tracing JIT compiler, RPython}
}
Document
DOI: 10.4230/LIPIcs.FORC.2025.12
Infinitely Divisible Noise for Differential Privacy: Nearly Optimal Error in the High ε Regime

Authors: Charlie Harrison and Pasin Manurangsi

Published in: LIPIcs, Volume 329, 6th Symposium on Foundations of Responsible Computing (FORC 2025)

Abstract
Differential privacy (DP) can be achieved in a distributed manner, where multiple parties add independent noise such that their sum protects the overall dataset with DP. A common technique here is for each party to sample their noise from the decomposition of an infinitely divisible distribution. We analyze two mechanisms in this setting: 1) the generalized discrete Laplace (GDL) mechanism, whose distribution (which is closed under summation) follows from differences of i.i.d. negative binomial shares, and 2) the multi-scale discrete Laplace (MSDLap) mechanism, a novel mechanism following the sum of multiple i.i.d. discrete Laplace shares at different scales. For ε ≥ 1, our mechanisms can be parameterized to have O(Δ³ e^{-ε}) and O(min(Δ³ e^{-ε}, Δ² e^{-2ε/3})) MSE, respectively, where Δ denote the sensitivity; the latter bound matches known optimality results. Furthermore, the MSDLap mechanism has the optimal MSE including constants as ε → ∞. We also show a transformation from the discrete setting to the continuous setting, which allows us to transform both mechanisms to the continuous setting and thereby achieve the optimal O(Δ² e^{-2ε / 3}) MSE. To our knowledge, these are the first infinitely divisible additive noise mechanisms that achieve order-optimal MSE under pure DP for either the discrete or continuous setting, so our work shows formally there is no separation in utility when query-independent noise adding mechanisms are restricted to infinitely divisible noise. For the continuous setting, our result improves upon Pagh and Stausholm’s Arete distribution which gives an MSE of O(Δ² e^{-ε/4}) [Pagh and Stausholm, 2022]. Furthermore, we give an exact sampler tuned to efficiently implement the MSDLap mechanism, and we apply our results to improve a state of the art multi-message shuffle DP protocol from [Balle et al., 2020] in the high ε regime.
Cite as

Charlie Harrison and Pasin Manurangsi. Infinitely Divisible Noise for Differential Privacy: Nearly Optimal Error in the High ε Regime. In 6th Symposium on Foundations of Responsible Computing (FORC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 329, pp. 12:1-12:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{harrison_et_al:LIPIcs.FORC.2025.12,
  author =	{Harrison, Charlie and Manurangsi, Pasin},
  title =	{{Infinitely Divisible Noise for Differential Privacy: Nearly Optimal Error in the High \epsilon Regime}},
  booktitle =	{6th Symposium on Foundations of Responsible Computing (FORC 2025)},
  pages =	{12:1--12:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-367-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{329},
  editor =	{Bun, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FORC.2025.12},
  URN =		{urn:nbn:de:0030-drops-231396},
  doi =		{10.4230/LIPIcs.FORC.2025.12},
  annote =	{Keywords: Differential Privacy, Distributed Noise Addition}
}
Document
DOI: 10.4230/LIPIcs.FORC.2025.6
Near-Universally-Optimal Differentially Private Minimum Spanning Trees

Authors: Richard Hladík and Jakub Tětek

Published in: LIPIcs, Volume 329, 6th Symposium on Foundations of Responsible Computing (FORC 2025)

Abstract
Devising mechanisms with good beyond-worst-case input-dependent performance has been an important focus of differential privacy, with techniques such as smooth sensitivity, propose-test-release, or inverse sensitivity mechanism being developed to achieve this goal. This makes it very natural to use the notion of universal optimality in differential privacy. Universal optimality is a strong instance-specific optimality guarantee for problems on weighted graphs, which roughly states that for any fixed underlying (unweighted) graph, the algorithm is optimal in the worst-case sense, with respect to the possible setting of the edge weights. In this paper, we give the first such result in differential privacy. Namely, we prove that a simple differentially private mechanism for approximately releasing the minimum spanning tree is near-optimal in the sense of universal optimality for the 𝓁₁ neighbor relation. Previously, it was only known that this mechanism is nearly optimal in the worst case. We then focus on the 𝓁_∞ neighbor relation, for which the described mechanism is not optimal. We show that one may implement the exponential mechanism for MST in polynomial time, and that this results in universal near-optimality for both the 𝓁₁ and the 𝓁_∞ neighbor relations.
Cite as

Richard Hladík and Jakub Tětek. Near-Universally-Optimal Differentially Private Minimum Spanning Trees. In 6th Symposium on Foundations of Responsible Computing (FORC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 329, pp. 6:1-6:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hladik_et_al:LIPIcs.FORC.2025.6,
  author =	{Hlad{\'\i}k, Richard and T\v{e}tek, Jakub},
  title =	{{Near-Universally-Optimal Differentially Private Minimum Spanning Trees}},
  booktitle =	{6th Symposium on Foundations of Responsible Computing (FORC 2025)},
  pages =	{6:1--6:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-367-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{329},
  editor =	{Bun, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FORC.2025.6},
  URN =		{urn:nbn:de:0030-drops-231337},
  doi =		{10.4230/LIPIcs.FORC.2025.6},
  annote =	{Keywords: differential privacy, universal optimality, minimum spanning trees}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.61
Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices

Authors: Stefan Kiefer and Andrew Ryzhikov

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
A zero-one matrix is a matrix with entries from {0, 1}. We study monoids containing only such matrices. A finite set of zero-one matrices generating such a monoid can be seen as the matrix representation of an unambiguous finite automaton, an important generalisation of deterministic finite automata which shares many of their good properties. Let 𝒜 be a finite set of n×n zero-one matrices generating a monoid of zero-one matrices, and m be the cardinality of 𝒜. We study the computational complexity of computing the minimum rank of a matrix in the monoid generated by 𝒜. By using linear-algebraic techniques, we show that this problem is in NC and can be solved in 𝒪(mn⁴) time. We also provide a combinatorial algorithm finding a matrix of minimum rank in 𝒪(n^{2 + ω} + mn⁴) time, where 2 ≤ ω ≤ 2.4 is the matrix multiplication exponent. As a byproduct, we show a very weak version of a generalisation of the Černý conjecture: there always exists a straight line program of size 𝒪(n²) describing a product resulting in a matrix of minimum rank. For the special case corresponding to complete DFAs (that is, for the case where all matrices have exactly one 1 in each row), the minimum rank is the size of the smallest image of the set of states under the action of a word. Our combinatorial algorithm finds a matrix of minimum rank in time 𝒪(n³ + mn²) in this case.
Cite as

Stefan Kiefer and Andrew Ryzhikov. Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 61:1-61:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kiefer_et_al:LIPIcs.STACS.2025.61,
  author =	{Kiefer, Stefan and Ryzhikov, Andrew},
  title =	{{Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{61:1--61:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.61},
  URN =		{urn:nbn:de:0030-drops-228867},
  doi =		{10.4230/LIPIcs.STACS.2025.61},
  annote =	{Keywords: matrix monoids, minimum rank, unambiguous automata}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.54
Multidimensional Quantum Walks, Recursion, and Quantum Divide & Conquer

Authors: Stacey Jeffery and Galina Pass

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
We introduce an object called a subspace graph that formalizes the technique of multidimensional quantum walks. Composing subspace graphs allows one to seamlessly combine quantum and classical reasoning, keeping a classical structure in mind, while abstracting quantum parts into subgraphs with simple boundaries as needed. As an example, we show how to combine a switching network with arbitrary quantum subroutines, to compute a composed function. As another application, we give a time-efficient implementation of quantum Divide & Conquer when the sub-problems are combined via a Boolean formula. We use this to quadratically speed up Savitch’s algorithm for directed st-connectivity.
Cite as

Stacey Jeffery and Galina Pass. Multidimensional Quantum Walks, Recursion, and Quantum Divide & Conquer. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 54:1-54:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jeffery_et_al:LIPIcs.STACS.2025.54,
  author =	{Jeffery, Stacey and Pass, Galina},
  title =	{{Multidimensional Quantum Walks, Recursion, and Quantum Divide \& Conquer}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{54:1--54:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.54},
  URN =		{urn:nbn:de:0030-drops-228791},
  doi =		{10.4230/LIPIcs.STACS.2025.54},
  annote =	{Keywords: Quantum Divide \& Conquer, Time-Efficient, Subspace Graphs, Quantum Walks, Switching Networks, Directed st-Connectivity}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2025.53
Differential Privacy on Trust Graphs

Authors: Badih Ghazi, Ravi Kumar, Pasin Manurangsi, and Serena Wang

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)

Abstract
We study differential privacy (DP) in a multi-party setting where each party only trusts a (known) subset of the other parties with its data. Specifically, given a trust graph where vertices correspond to parties and neighbors are mutually trusting, we give a DP algorithm for aggregation with a much better privacy-utility trade-off than in the well-studied local model of DP (where each party trusts no other party). We further study a robust variant where each party trusts all but an unknown subset of at most t of its neighbors (where t is a given parameter), and give an algorithm for this setting. We complement our algorithms with lower bounds, and discuss implications of our work to other tasks in private learning and analytics.
Cite as

Badih Ghazi, Ravi Kumar, Pasin Manurangsi, and Serena Wang. Differential Privacy on Trust Graphs. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 53:1-53:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghazi_et_al:LIPIcs.ITCS.2025.53,
  author =	{Ghazi, Badih and Kumar, Ravi and Manurangsi, Pasin and Wang, Serena},
  title =	{{Differential Privacy on Trust Graphs}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{53:1--53:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.53},
  URN =		{urn:nbn:de:0030-drops-226816},
  doi =		{10.4230/LIPIcs.ITCS.2025.53},
  annote =	{Keywords: Differential privacy, trust graphs, minimum dominating set, packing number}
}
Document
DOI: 10.4230/LITES.8.1.3
HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology

Authors: Manoj-Rohit Vemparala, Nael Fasfous, Alexander Frickenstein, Emanuele Valpreda, Manfredi Camalleri, Qi Zhao, Christian Unger, Naveen-Shankar Nagaraja, Maurizio Martina, and Walter Stechele

Published in: LITES, Volume 8, Issue 1 (2022): Special Issue on Embedded Systems for Computer Vision. Leibniz Transactions on Embedded Systems, Volume 8, Issue 1

Abstract
Convolutional neural networks (CNNs) have produced unprecedented accuracy for many computer vision problems in the recent past. In power and compute-constrained embedded platforms, deploying modern CNNs can present many challenges. Most CNN architectures do not run in real-time due to the high number of computational operations involved during the inference phase. This emphasizes the role of CNN optimization techniques in early design space exploration. To estimate their efficacy in satisfying the target constraints, existing techniques are either hardware (HW) agnostic, pseudo-HW-aware by considering parameter and operation counts, or HW-aware through inflexible hardware-in-the-loop (HIL) setups. In this work, we introduce HW-Flow, a framework for optimizing and exploring CNN models based on three levels of hardware abstraction: Coarse, Mid and Fine. Through these levels, CNN design and optimization can be iteratively refined towards efficient execution on the target hardware platform. We present HW-Flow in the context of CNN pruning by augmenting a reinforcement learning agent with key metrics to understand the influence of its pruning actions on the inference hardware. With 2× reduction in energy and latency, we prune ResNet56, ResNet50, and DeepLabv3 with minimal accuracy degradation on the CIFAR-10, ImageNet, and CityScapes datasets, respectively.
Cite as

Manoj-Rohit Vemparala, Nael Fasfous, Alexander Frickenstein, Emanuele Valpreda, Manfredi Camalleri, Qi Zhao, Christian Unger, Naveen-Shankar Nagaraja, Maurizio Martina, and Walter Stechele. HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology. In LITES, Volume 8, Issue 1 (2022): Special Issue on Embedded Systems for Computer Vision. Leibniz Transactions on Embedded Systems, Volume 8, Issue 1, pp. 03:1-03:30, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@Article{vemparala_et_al:LITES.8.1.3,
  author =	{Vemparala, Manoj-Rohit and Fasfous, Nael and Frickenstein, Alexander and Valpreda, Emanuele and Camalleri, Manfredi and Zhao, Qi and Unger, Christian and Nagaraja, Naveen-Shankar and Martina, Maurizio and Stechele, Walter},
  title =	{{HW-Flow: A Multi-Abstraction Level HW-CNN Codesign Pruning Methodology}},
  journal =	{Leibniz Transactions on Embedded Systems},
  pages =	{03:1--03:30},
  ISSN =	{2199-2002},
  year =	{2022},
  volume =	{8},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LITES.8.1.3},
  URN =		{urn:nbn:de:0030-drops-192905},
  doi =		{10.4230/LITES.8.1.3},
  annote =	{Keywords: Convolutional Neural Networks, Optimization, Hardware Modeling, Pruning}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2018.17
CROCHET: Checkpoint and Rollback via Lightweight Heap Traversal on Stock JVMs

Authors: Jonathan Bell and Luís Pina

Published in: LIPIcs, Volume 109, 32nd European Conference on Object-Oriented Programming (ECOOP 2018)

Abstract
Checkpoint/rollback (CR) mechanisms create snapshots of the state of a running application, allowing it to later be restored to that checkpointed snapshot. Support for checkpoint/rollback enables many program analyses and software engineering techniques, including test generation, fault tolerance, and speculative execution. Fully automatic CR support is built into some modern operating systems. However, such systems perform checkpoints at the coarse granularity of whole pages of virtual memory, which imposes relatively high overhead to incrementally capture the changing state of a process, and makes it difficult for applications to checkpoint only some logical portions of their state. CR systems implemented at the application level and with a finer granularity typically require complex developer support to identify: (1) where checkpoints can take place, and (2) which program state needs to be copied. A popular compromise is to implement CR support in managed runtime environments, e.g. the Java Virtual Machine (JVM), but this typically requires specialized, non-standard runtime environments, limiting portability and adoption of this approach. In this paper, we present a novel approach for Checkpoint ROllbaCk via lightweight HEap Traversal (Crochet), which enables fully automatic fine-grained lightweight checkpoints within unmodified commodity JVMs (specifically Oracle's HotSpot and OpenJDK). Leveraging key insights about the internal design common to modern JVMs, Crochet works entirely through bytecode rewriting and standard debug APIs, utilizing special proxy objects to perform a lazy heap traversal that starts at the root references and traverses the heap as objects are accessed, copying or restoring state as needed and removing each proxy immediately after it is used. We evaluated Crochet on the DaCapo benchmark suite, finding it to have very low runtime overhead in steady state (ranging from no overhead to 1.29x slowdown), and that it often outperforms a state-of-the-art system-level checkpoint tool when creating large checkpoints.
Cite as

Jonathan Bell and Luís Pina. CROCHET: Checkpoint and Rollback via Lightweight Heap Traversal on Stock JVMs. In 32nd European Conference on Object-Oriented Programming (ECOOP 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 109, pp. 17:1-17:31, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{bell_et_al:LIPIcs.ECOOP.2018.17,
  author =	{Bell, Jonathan and Pina, Lu{\'\i}s},
  title =	{{CROCHET: Checkpoint and Rollback via Lightweight Heap Traversal on Stock JVMs}},
  booktitle =	{32nd European Conference on Object-Oriented Programming (ECOOP 2018)},
  pages =	{17:1--17:31},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-079-8},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{109},
  editor =	{Millstein, Todd},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2018.17},
  URN =		{urn:nbn:de:0030-drops-92223},
  doi =		{10.4230/LIPIcs.ECOOP.2018.17},
  annote =	{Keywords: Checkpoint rollback, runtime systems, dynamic analysis}
}
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