16 Search Results for "Holzer, Markus"

Document
DOI: 10.4230/LIPIcs.CPM.2026.11
Matching Regular-Typed Pattern Languages: Quadratic-Time Algorithms

Authors: Yuya Uezato

Published in: LIPIcs, Volume 369, 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)

Abstract
Pattern languages (PAT) are a class of languages generated by expressions called patterns that may contain variables. In a pattern, each variable can be instantiated with an arbitrary string. Typed pattern languages extend PAT by associating a type (constraint) with each variable that restricts the domain of allowed substitutions. In this paper, we study regular-typed PAT (PATwRT), where all types are represented either by a regular expression or by an ε-NFA. We consider the PATwRT matching problem for patterns with a single repeated variable of the form P = α₁ β α₂ β ⋯ β α_K. We present simple algorithms whose running time is linear in K and quadratic in the input length N, with polynomial dependence on the sizes of the type representations. Our results extend previous quadratic-time work in two directions: (1) the quadratic-time algorithm for untyped PAT of Fernau et al. (STACS 2015), and (2) the quadratic-time algorithm for the restricted PATwRT K = 3, i.e., α₁ β α₂ β α₃ of Nogami and Terauchi (MFCS 2025).
Cite as

Yuya Uezato. Matching Regular-Typed Pattern Languages: Quadratic-Time Algorithms. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 369, pp. 11:1-11:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{uezato:LIPIcs.CPM.2026.11,
  author =	{Uezato, Yuya},
  title =	{{Matching Regular-Typed Pattern Languages: Quadratic-Time Algorithms}},
  booktitle =	{37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026)},
  pages =	{11:1--11:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-420-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{369},
  editor =	{Bille, Philip and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2026.11},
  URN =		{urn:nbn:de:0030-drops-259374},
  doi =		{10.4230/LIPIcs.CPM.2026.11},
  annote =	{Keywords: Pattern languages, Regular expressions, String algorithms}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2026.44
Tilt Automata: Gathering Particles with Uniform External Control

Authors: Sándor P. Fekete, Jonas Friemel, Peter Kramer, Jan-Marc Reinhardt, Christian Rieck, and Christian Scheffer

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
Motivated by targeted drug delivery, we investigate the gathering of particles in the full tilt model of externally controlled motion planning: A set of particles is located at the tiles of a polyomino with all particles reacting uniformly to an external force by moving as far as possible in one of the four axis-parallel directions until they hit the boundary. The goal is to choose a sequence of directions that moves all particles to a common position. Our results include a polynomial-time algorithm for gathering in a completely filled polyomino as well as hardness reductions for approximating shortest gathering sequences and for determining whether the particles in a partially filled polyomino can be gathered. We pay special attention to the impact of restricted geometry, particularly polyominoes without holes. As a corollary, we make progress on an open question from [Balanza-Martinez et al., SODA 2020] by showing that deciding whether a given position can be occupied remains NP-hard in polyominoes without holes. Our results build on a connection we establish between tilt models and the theory of synchronizing automata.
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Sándor P. Fekete, Jonas Friemel, Peter Kramer, Jan-Marc Reinhardt, Christian Rieck, and Christian Scheffer. Tilt Automata: Gathering Particles with Uniform External Control. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 44:1-44:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{fekete_et_al:LIPIcs.SoCG.2026.44,
  author =	{Fekete, S\'{a}ndor P. and Friemel, Jonas and Kramer, Peter and Reinhardt, Jan-Marc and Rieck, Christian and Scheffer, Christian},
  title =	{{Tilt Automata: Gathering Particles with Uniform External Control}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{44:1--44:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.44},
  URN =		{urn:nbn:de:0030-drops-258508},
  doi =		{10.4230/LIPIcs.SoCG.2026.44},
  annote =	{Keywords: Uniform control, gathering, full tilt, polyominoes, synchronizing automata}
}
Document
DOI: 10.4230/LIPIcs.FUN.2026.17
Sorting Magazines and Boxes

Authors: Gabriele Fici, Manal Mohamed, and Jakub Radoszewski

Published in: LIPIcs, Volume 366, 13th International Conference on Fun with Algorithms (FUN 2026)

Abstract
It is a rainy Sunday. Agata has decided to sort the magazines on her shelf. Because the magazines are quite thin, she refuses to insert one between two others, preferring to move them only to the ends of the shelf. She has conceived a strategy for this but is unsure of its efficiency. Meanwhile, in the adjacent room, her three-year-old son, Szymon, has just finished his Montessori tower puzzle and is figuring out how to put it away. He has adopted a very intuitive approach to nesting the boxes, though he is not certain it will ultimately succeed. Agata and Szymon are employing very primitive strategies. While many sorting algorithms are remarkably simple to explain and implement-specifically, the class of in-place sorting algorithms with 𝒪(n²) worst-case and average-case running time and constant space requirements (e.g., Bubble Sort, Gnome Sort)-the strategies discussed here offer a unique perspective on "intuitive" sorting. Our contribution aims to enrich the field of simple sorting algorithms. Interestingly, determining the exact worst-case complexity of some of the proposed algorithms remains an open problem.
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Gabriele Fici, Manal Mohamed, and Jakub Radoszewski. Sorting Magazines and Boxes. In 13th International Conference on Fun with Algorithms (FUN 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 366, pp. 17:1-17:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{fici_et_al:LIPIcs.FUN.2026.17,
  author =	{Fici, Gabriele and Mohamed, Manal and Radoszewski, Jakub},
  title =	{{Sorting Magazines and Boxes}},
  booktitle =	{13th International Conference on Fun with Algorithms (FUN 2026)},
  pages =	{17:1--17:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-417-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{366},
  editor =	{Iacono, John},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FUN.2026.17},
  URN =		{urn:nbn:de:0030-drops-257368},
  doi =		{10.4230/LIPIcs.FUN.2026.17},
  annote =	{Keywords: Sorting algorithm, analysis of algorithms, intuitive sorting}
}
Document
DOI: 10.4230/LIPIcs.FUN.2026.40
An ASP-Completeness Framework for Dynasty Puzzles

Authors: Kosuke Susukita

Published in: LIPIcs, Volume 366, 13th International Conference on Fun with Algorithms (FUN 2026)

Abstract
A certain class of pencil-and-paper puzzles shares common rules: given a grid, certain cells must be shaded such that i) no two shaded cells are orthogonally adjacent, and ii) all unshaded cells are orthogonally connected. Such puzzles are sometimes referred to as "dynasty puzzles" within parts of the online puzzle community. We introduce a framework for proving the ASP-completeness (i.e., NP-complete under parsimonious reductions) of various dynasty puzzles. We apply this framework to seven specific dynasty puzzles - Akichiwake, Aquapelago, Ayeheya, Guide Arrow, Heyawake, Hitori, and Kurodoko. As a consequence, for given k solutions of any of these puzzles, deciding whether a distinct solution exists is NP-complete, and counting the number of solutions is #P-complete. Our results strengthen the known result of ASP-completeness for Heyawake and establish the ASP-completeness of the other six puzzles. The main idea is to reconstruct the reduction from the Tree-Residue Vertex-Breaking Problem (TRVB) to the Hamiltonian Cycle Problem introduced by MIT Hardness Group (2024). In our framework, the connectivity of the unshaded cells ensures the connectivity of the shaded cells, allowing the shaded cells to simulate TRVB, which is also an alternative representation of the Hamiltonian cycles under certain conditions.
Cite as

Kosuke Susukita. An ASP-Completeness Framework for Dynasty Puzzles. In 13th International Conference on Fun with Algorithms (FUN 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 366, pp. 40:1-40:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{susukita:LIPIcs.FUN.2026.40,
  author =	{Susukita, Kosuke},
  title =	{{An ASP-Completeness Framework for Dynasty Puzzles}},
  booktitle =	{13th International Conference on Fun with Algorithms (FUN 2026)},
  pages =	{40:1--40:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-417-8},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{366},
  editor =	{Iacono, John},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FUN.2026.40},
  URN =		{urn:nbn:de:0030-drops-257596},
  doi =		{10.4230/LIPIcs.FUN.2026.40},
  annote =	{Keywords: ASP-completeness, pencil-and-paper puzzles, dynasty puzzles, Hitori, Kurodoko, Hamiltonian cycle, Tree-Residue Vertex-Breaking}
}
Document
DOI: 10.4230/LIPIcs.STACS.2026.60
The Asymptotic Size of Finite Irreducible Semigroups of Rational Matrices

Authors: Stefan Kiefer and Andrew Ryzhikov

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
We study finite semigroups of n × n matrices with rational entries. Such semigroups provide a rich generalization of transition monoids of unambiguous (and, in particular, deterministic) finite automata. In this paper we determine the maximum size of finite semigroups of rational n × n matrices, with the goal of shedding more light on the structure of such matrix semigroups. While in general such semigroups can be arbitrarily large in terms of n, a classical result of Schützenberger from 1962 implies an upper bound of 2^{𝒪(n² log n)} for irreducible semigroups, i.e., the only subspaces of ℚⁿ that are invariant for all matrices in the semigroup are ℚⁿ and the subspace consisting only of the zero vector. Irreducible matrix semigroups can be viewed as the building blocks of general matrix semigroups, and as such play an important role in mathematics and computer science. From the point of view of automata theory, they generalize strongly connected automata. Using a very different technique from that of Schützenberger, we improve the upper bound on the cardinality to 3^{n²}. This is the main result of the paper. The bound is in some sense tight, as we show that there exists, for every n, a finite irreducible semigroup with 3^{⌊ n²/4 ⌋} rational matrices. Our main result also leads to an improvement of a bound, due to Almeida and Steinberg, on the mortality threshold. The mortality threshold is a number 𝓁 such that if the zero matrix is in the semigroup, then the zero matrix can be written as a product of at most 𝓁 matrices from any subset that generates the semigroup.
Cite as

Stefan Kiefer and Andrew Ryzhikov. The Asymptotic Size of Finite Irreducible Semigroups of Rational Matrices. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 60:1-60:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kiefer_et_al:LIPIcs.STACS.2026.60,
  author =	{Kiefer, Stefan and Ryzhikov, Andrew},
  title =	{{The Asymptotic Size of Finite Irreducible Semigroups of Rational Matrices}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{60:1--60:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.60},
  URN =		{urn:nbn:de:0030-drops-255496},
  doi =		{10.4230/LIPIcs.STACS.2026.60},
  annote =	{Keywords: finite matrix semigroups, irreducible matrix semigroups, matrix mortality, aperiodic semigroups, unambiguous automata, transition monoids}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.44
Minimal DFAs Witnessing Language Inequivalence

Authors: Jan Martens

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
We study small witnesses for the inequivalence of two regular languages. A natural witness is a distinguishing word, e.g. a word in exactly one of the two languages. We propose using more succinct witnesses in the form of witnessing DFAs. A witnessing DFA recognizes a subset of one of the languages and contains at least one distinguishing word. In this way the DFA expresses behaviour contained in the first language but not the second. We show witnessing DFAs can be used to present more concise witnesses for the inequivalence of two regular languages. We show that the decision problem for the existence of a witnessing DFA of certain size is NP-complete in general, and in P in the special case of unary DFAs. Besides these computational aspects, we study structural properties of witnessing DFAs. Not all languages can be a minimal witness. It turns out that minimal witnesses are exactly the languages that are not decomposable in the union of languages with smaller state-complexity, the so-called prime languages as studied earlier by Kupferman and Mosheiff.
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Jan Martens. Minimal DFAs Witnessing Language Inequivalence. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 44:1-44:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{martens:LIPIcs.CSL.2026.44,
  author =	{Martens, Jan},
  title =	{{Minimal DFAs Witnessing Language Inequivalence}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{44:1--44:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.44},
  URN =		{urn:nbn:de:0030-drops-254691},
  doi =		{10.4230/LIPIcs.CSL.2026.44},
  annote =	{Keywords: Deterministic Finite Automata, Language Inequivalence, DFA decomposition, Prime languages}
}
Document
Use Case
DOI: 10.4230/TGDK.3.3.2
Automating Invoice Validation with Knowledge Graphs: Optimizations and Practical Lessons

Authors: Johannes Mäkelburg and Maribel Acosta

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
To increase the efficiency of creating, distributing, and processing of invoices, invoicing is handled in the form of Electronic Data Interchange (EDI). With EDI, invoices are handled in a standardized electronic or digital format rather than on paper. While EDIFACT is widely used for electronic invoicing, there is no standardized approach for validating its content. In this work, we tackle the problem of automatically validating electronic invoices in the EDIFACT format by leveraging KG technologies. We build on a previously developed pipeline that transforms EDIFACT invoices into RDF knowledge graphs (KGs). The resulting graphs are validated using SHACL constraints defined in collaboration with domain experts. In this work, we improve the pipeline by enhancing the correctness of the invoice representation, reducing validation time, and introducing error prioritization through the use of the severity predicate in SHACL. These improvements make validation results easier to interpret and significantly reduce the manual effort required. Our evaluation confirms that the approach is correct, efficient, and practical for real-world use.
Cite as

Johannes Mäkelburg and Maribel Acosta. Automating Invoice Validation with Knowledge Graphs: Optimizations and Practical Lessons. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 2:1-2:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{makelburg_et_al:TGDK.3.3.2,
  author =	{M\"{a}kelburg, Johannes and Acosta, Maribel},
  title =	{{Automating Invoice Validation with Knowledge Graphs: Optimizations and Practical Lessons}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:24},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.2},
  URN =		{urn:nbn:de:0030-drops-252137},
  doi =		{10.4230/TGDK.3.3.2},
  annote =	{Keywords: Electronic Invoice, Ontology, EDIFACT, RDF, RML, SHACL}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.62
The Complexity of Reachability Problems in Strongly Connected Finite Automata

Authors: Stefan Kiefer and Andrew Ryzhikov

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Several reachability problems in finite automata, such as completeness of NFAs and synchronisation of total DFAs, correspond to fundamental properties of sets of nonnegative matrices. In particular, the two mentioned properties correspond to matrix mortality and ergodicity, which ask whether there exists a product of the input matrices that is equal to, respectively, the zero matrix and a matrix with a column of strictly positive entries only. The case where the input automaton is strongly connected (that is, the corresponding set of nonnegative matrices is irreducible) frequently appears in applications and often admits better properties than the general case. In this paper, we address the existence of such properties from the computational complexity point of view, and develop a versatile technique to show that several NL-complete problems remain NL-complete in the strongly connected case. In particular, we show that deciding if a binary total DFA is synchronising is NL-complete even if it is promised to be strongly connected, and that deciding completeness of a binary unambiguous NFA with very limited nondeterminism is NL-complete under the same promise.
Cite as

Stefan Kiefer and Andrew Ryzhikov. The Complexity of Reachability Problems in Strongly Connected Finite Automata. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 62:1-62:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kiefer_et_al:LIPIcs.MFCS.2025.62,
  author =	{Kiefer, Stefan and Ryzhikov, Andrew},
  title =	{{The Complexity of Reachability Problems in Strongly Connected Finite Automata}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{62:1--62:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.62},
  URN =		{urn:nbn:de:0030-drops-241690},
  doi =		{10.4230/LIPIcs.MFCS.2025.62},
  annote =	{Keywords: unambiguous automata, nonnegative matrices, irreducible matrix sets, strongly connected automata, matrix monoids, mortality, completeness, synchronisation, ergodicity}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.5
Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin Deletion

Authors: Da-Jung Cho, Szilárd Zsolt Fazekas, Shinnosuke Seki, and Max Wiedenhöft

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
RNA co-transcriptionality, where RNA is spliced or folded during transcription from DNA templates, offers promising potential for molecular programming. It enables programmable folding of nanoscale RNA structures and has recently been shown to be Turing universal. While post-transcriptional splicing is well studied, co-transcriptional splicing is gaining attention for its efficiency, though its unpredictability still remains a challenge. In this paper, we focus on engineering co-transcriptional splicing, not only as a natural phenomenon but as a programmable mechanism for generating specific RNA target sequences from DNA templates. The problem we address is whether we can encode a set of RNA sequences for a given system onto a DNA template word, ensuring that all the sequences are generated through co-transcriptional splicing. Given that finding the optimal encoding has been shown to be NP-complete under the various energy models considered [Da-Jung Cho et al., 2025], we propose a practical alternative approach under the logarithmic energy model. More specifically, we provide a construction that encodes an arbitrary nondeterministic finite automaton (NFA) into a circular DNA template from which co-transcriptional splicing produces all sequences accepted by the NFA. As all finite languages can be efficiently encoded as NFA, this framework solves the problem of finding small DNA templates for arbitrary target sets of RNA sequences. The quest to obtain the smallest possible such templates naturally leads us to consider the problem of minimizing NFAs and certain practically motivated variants of it, but as we show, those minimization problems are computationally intractable.
Cite as

Da-Jung Cho, Szilárd Zsolt Fazekas, Shinnosuke Seki, and Max Wiedenhöft. Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin Deletion. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 5:1-5:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cho_et_al:LIPIcs.DNA.31.5,
  author =	{Cho, Da-Jung and Fazekas, Szil\'{a}rd Zsolt and Seki, Shinnosuke and Wiedenh\"{o}ft, Max},
  title =	{{Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin Deletion}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{5:1--5:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.5},
  URN =		{urn:nbn:de:0030-drops-238548},
  doi =		{10.4230/LIPIcs.DNA.31.5},
  annote =	{Keywords: RNA Transcription, Co-Transcriptional Splicing, Finite Automata Simulation, NFA Minimization}
}
Document
DOI: 10.4230/LIPIcs.CONCUR.2025.26
Optimal Concolic Dynamic Partial Order Reduction

Authors: Mohammad Hossein Khoshechin Jorshari, Michalis Kokologiannakis, Rupak Majumdar, and Srinidhi Nagendra

Published in: LIPIcs, Volume 348, 36th International Conference on Concurrency Theory (CONCUR 2025)

Abstract
Stateless model checking (SMC) software implementations requires exploring both concurrency- and data nondeterminism. Unfortunately, most SMC algorithms focus on efficient exploration of concurrency nondeterminism, thereby neglecting an important source of bugs. We present ConDpor, an SMC algorithm for unmodified Java programs that combines optimal dynamic partial order reduction (DPOR) for concurrency nondeterminism, with concolic execution for data nondeterminism. ConDpor is sound, complete, optimal, and parametric w.r.t. the memory consistency model. Our experiments confirm that ConDpor is exponentially faster than DPOR with small-domain enumeration. Overall, ConDpor opens the door for efficient exploration of concurrent programs with data nondeterminism.
Cite as

Mohammad Hossein Khoshechin Jorshari, Michalis Kokologiannakis, Rupak Majumdar, and Srinidhi Nagendra. Optimal Concolic Dynamic Partial Order Reduction. In 36th International Conference on Concurrency Theory (CONCUR 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 348, pp. 26:1-26:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{khoshechinjorshari_et_al:LIPIcs.CONCUR.2025.26,
  author =	{Khoshechin Jorshari, Mohammad Hossein and Kokologiannakis, Michalis and Majumdar, Rupak and Nagendra, Srinidhi},
  title =	{{Optimal Concolic Dynamic Partial Order Reduction}},
  booktitle =	{36th International Conference on Concurrency Theory (CONCUR 2025)},
  pages =	{26:1--26:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-389-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{348},
  editor =	{Bouyer, Patricia and van de Pol, Jaco},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CONCUR.2025.26},
  URN =		{urn:nbn:de:0030-drops-239765},
  doi =		{10.4230/LIPIcs.CONCUR.2025.26},
  annote =	{Keywords: Stateless model checking, dynamic symbolic execution}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.61
Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices

Authors: Stefan Kiefer and Andrew Ryzhikov

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
A zero-one matrix is a matrix with entries from {0, 1}. We study monoids containing only such matrices. A finite set of zero-one matrices generating such a monoid can be seen as the matrix representation of an unambiguous finite automaton, an important generalisation of deterministic finite automata which shares many of their good properties. Let 𝒜 be a finite set of n×n zero-one matrices generating a monoid of zero-one matrices, and m be the cardinality of 𝒜. We study the computational complexity of computing the minimum rank of a matrix in the monoid generated by 𝒜. By using linear-algebraic techniques, we show that this problem is in NC and can be solved in 𝒪(mn⁴) time. We also provide a combinatorial algorithm finding a matrix of minimum rank in 𝒪(n^{2 + ω} + mn⁴) time, where 2 ≤ ω ≤ 2.4 is the matrix multiplication exponent. As a byproduct, we show a very weak version of a generalisation of the Černý conjecture: there always exists a straight line program of size 𝒪(n²) describing a product resulting in a matrix of minimum rank. For the special case corresponding to complete DFAs (that is, for the case where all matrices have exactly one 1 in each row), the minimum rank is the size of the smallest image of the set of states under the action of a word. Our combinatorial algorithm finds a matrix of minimum rank in time 𝒪(n³ + mn²) in this case.
Cite as

Stefan Kiefer and Andrew Ryzhikov. Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 61:1-61:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kiefer_et_al:LIPIcs.STACS.2025.61,
  author =	{Kiefer, Stefan and Ryzhikov, Andrew},
  title =	{{Efficiently Computing the Minimum Rank of a Matrix in a Monoid of Zero-One Matrices}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{61:1--61:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.61},
  URN =		{urn:nbn:de:0030-drops-228867},
  doi =		{10.4230/LIPIcs.STACS.2025.61},
  annote =	{Keywords: matrix monoids, minimum rank, unambiguous automata}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2021.34
On the Complexity of Intersection Non-emptiness for Star-Free Language Classes

Authors: Emmanuel Arrighi, Henning Fernau, Stefan Hoffmann, Markus Holzer, Ismaël Jecker, Mateus de Oliveira Oliveira, and Petra Wolf

Published in: LIPIcs, Volume 213, 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021)

Abstract
In the Intersection Non-emptiness problem, we are given a list of finite automata A_1, A_2,… , A_m over a common alphabet Σ as input, and the goal is to determine whether some string w ∈ Σ^* lies in the intersection of the languages accepted by the automata in the list. We analyze the complexity of the Intersection Non-emptiness problem under the promise that all input automata accept a language in some level of the dot-depth hierarchy, or some level of the Straubing-Thérien hierarchy. Automata accepting languages from the lowest levels of these hierarchies arise naturally in the context of model checking. We identify a dichotomy in the dot-depth hierarchy by showing that the problem is already NP-complete when all input automata accept languages of the levels B_0 or B_{1/2} and already PSPACE-hard when all automata accept a language from the level B_1. Conversely, we identify a tetrachotomy in the Straubing-Thérien hierarchy. More precisely, we show that the problem is in AC^0 when restricted to level L_0; complete for L or NL, depending on the input representation, when restricted to languages in the level L_{1/2}; NP-complete when the input is given as DFAs accepting a language in L_1 or L_{3/2}; and finally, PSPACE-complete when the input automata accept languages in level L_2 or higher. Moreover, we show that the proof technique used to show containment in NP for DFAs accepting languages in L_1 or L_{3/2} does not generalize to the context of NFAs. To prove this, we identify a family of languages that provide an exponential separation between the state complexity of general NFAs and that of partially ordered NFAs. To the best of our knowledge, this is the first superpolynomial separation between these two models of computation.
Cite as

Emmanuel Arrighi, Henning Fernau, Stefan Hoffmann, Markus Holzer, Ismaël Jecker, Mateus de Oliveira Oliveira, and Petra Wolf. On the Complexity of Intersection Non-emptiness for Star-Free Language Classes. In 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 213, pp. 34:1-34:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{arrighi_et_al:LIPIcs.FSTTCS.2021.34,
  author =	{Arrighi, Emmanuel and Fernau, Henning and Hoffmann, Stefan and Holzer, Markus and Jecker, Isma\"{e}l and de Oliveira Oliveira, Mateus and Wolf, Petra},
  title =	{{On the Complexity of Intersection Non-emptiness for Star-Free Language Classes}},
  booktitle =	{41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021)},
  pages =	{34:1--34:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-215-0},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{213},
  editor =	{Boja\'{n}czyk, Miko{\l}aj and Chekuri, Chandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2021.34},
  URN =		{urn:nbn:de:0030-drops-155456},
  doi =		{10.4230/LIPIcs.FSTTCS.2021.34},
  annote =	{Keywords: Intersection Non-emptiness Problem, Star-Free Languages, Straubing-Th\'{e}rien Hierarchy, dot-depth Hierarchy, Commutative Languages, Complexity}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2021.52
Optimal Regular Expressions for Palindromes of Given Length

Authors: Hermann Gruber and Markus Holzer

Published in: LIPIcs, Volume 202, 46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021)

Abstract
The language P_n (P̃_n, respectively) consists of all words that are palindromes of length 2n (2n-1, respectively) over a fixed binary alphabet. We construct a regular expression that specifies P_n (P̃_n, respectively) of alphabetic width 4⋅ 2ⁿ-4 (3⋅ 2ⁿ-4, respectively) and show that this is optimal, that is, the expression has minimum alphabetic width among all expressions that describe P_n (P̃_n, respectively). To this end we give optimal expressions for the first k palindromes in lexicographic order of odd and even length, proving that the optimal bound is 2n+4(k-1)-2 S₂(k-1) in case of odd length and 2n+3(k-1)-2 S₂(k-1)-1 for even length, respectively. Here S₂(n) refers to the Hamming weight function, which denotes the number of ones in the binary expansion of the number n.
Cite as

Hermann Gruber and Markus Holzer. Optimal Regular Expressions for Palindromes of Given Length. In 46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 202, pp. 52:1-52:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

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@InProceedings{gruber_et_al:LIPIcs.MFCS.2021.52,
  author =	{Gruber, Hermann and Holzer, Markus},
  title =	{{Optimal Regular Expressions for Palindromes of Given Length}},
  booktitle =	{46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021)},
  pages =	{52:1--52:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-201-3},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{202},
  editor =	{Bonchi, Filippo and Puglisi, Simon J.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2021.52},
  URN =		{urn:nbn:de:0030-drops-144921},
  doi =		{10.4230/LIPIcs.MFCS.2021.52},
  annote =	{Keywords: regular expression, descriptional complexity, lower bound, upper bound, recurrence, sum of digits}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2019.63
Computational Complexity of Synchronization under Regular Constraints

Authors: Henning Fernau, Vladimir V. Gusev, Stefan Hoffmann, Markus Holzer, Mikhail V. Volkov, and Petra Wolf

Published in: LIPIcs, Volume 138, 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)

Abstract
Many variations of synchronization of finite automata have been studied in the previous decades. Here, we suggest studying the question if synchronizing words exist that belong to some fixed constraint language, given by some partial finite automaton called constraint automaton. We show that this synchronization problem becomes PSPACE-complete even for some constraint automata with two states and a ternary alphabet. In addition, we characterize constraint automata with arbitrarily many states for which the constrained synchronization problem is polynomial-time solvable. We classify the complexity of the constrained synchronization problem for constraint automata with two states and two or three letters completely and lift those results to larger classes of finite automata.
Cite as

Henning Fernau, Vladimir V. Gusev, Stefan Hoffmann, Markus Holzer, Mikhail V. Volkov, and Petra Wolf. Computational Complexity of Synchronization under Regular Constraints. In 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 138, pp. 63:1-63:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{fernau_et_al:LIPIcs.MFCS.2019.63,
  author =	{Fernau, Henning and Gusev, Vladimir V. and Hoffmann, Stefan and Holzer, Markus and Volkov, Mikhail V. and Wolf, Petra},
  title =	{{Computational Complexity of Synchronization under Regular Constraints}},
  booktitle =	{44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)},
  pages =	{63:1--63:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-117-7},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{138},
  editor =	{Rossmanith, Peter and Heggernes, Pinar and Katoen, Joost-Pieter},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2019.63},
  URN =		{urn:nbn:de:0030-drops-110078},
  doi =		{10.4230/LIPIcs.MFCS.2019.63},
  annote =	{Keywords: Finite automata, synchronization, computational complexity}
}
Document
DOI: 10.4230/LIPIcs.FUN.2018.23
Selection Via the Bogo-Method - More on the Analysis of Perversely Awful Randomized Algorithms

Authors: Markus Holzer and Jan-Tobias Maurer

Published in: LIPIcs, Volume 100, 9th International Conference on Fun with Algorithms (FUN 2018)

Abstract
We continue our research on perversely awful randomized algorithms, which started nearly a decade ago. Based on the bogo-method we design a bogo-selection algorithm and variants thereof and analyse them with elementary methods. Moreover, practical experiments are performed.
Cite as

Markus Holzer and Jan-Tobias Maurer. Selection Via the Bogo-Method - More on the Analysis of Perversely Awful Randomized Algorithms. In 9th International Conference on Fun with Algorithms (FUN 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 100, pp. 23:1-23:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{holzer_et_al:LIPIcs.FUN.2018.23,
  author =	{Holzer, Markus and Maurer, Jan-Tobias},
  title =	{{Selection Via the Bogo-Method - More on the Analysis of Perversely Awful Randomized Algorithms}},
  booktitle =	{9th International Conference on Fun with Algorithms (FUN 2018)},
  pages =	{23:1--23:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-067-5},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{100},
  editor =	{Ito, Hiro and Leonardi, Stefano and Pagli, Linda and Prencipe, Giuseppe},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FUN.2018.23},
  URN =		{urn:nbn:de:0030-drops-88146},
  doi =		{10.4230/LIPIcs.FUN.2018.23},
  annote =	{Keywords: selection, bogo-method, combinatorial sums and series,
inverse binomial coefficients, experimental result}
}
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