22 Search Results for "Cai, Walter"

Document
Short Paper
DOI: 10.4230/OASIcs.FMBC.2026.9
Towards Property-Based Testing of Smart Contracts Using Gas Analysis (Short Paper)

Authors: Elvira Albert, Emanuele De Angelis, Marco Di Ianni, Fabio Fioravanti, and Pablo Gordillo

Published in: OASIcs, Volume 142, 7th International Workshop on Formal Methods for Blockchains (FMBC 2026)

Abstract
Testing has become an integral part of the software development process in order to ensure the correct and safe execution of programs. A powerful approach to testing is property-based testing that aims at generating unit tests that verify that a certain property of interest holds. However, smart contracts are also characterized by important non-functional aspects, such as the gas consumption required to execute their functions. Static gas analyzers are able to obtain parametric gas bounds - that soundly over-approximate - the gas consumption of executing each of the public functions within a smart contract. This paper discusses our ideas towards combining both formal methods, property-based testing and gas analysis, in order to generate gas-aware unit tests that can ensure the gas requirements provided by the programmers.
Cite as

Elvira Albert, Emanuele De Angelis, Marco Di Ianni, Fabio Fioravanti, and Pablo Gordillo. Towards Property-Based Testing of Smart Contracts Using Gas Analysis (Short Paper). In 7th International Workshop on Formal Methods for Blockchains (FMBC 2026). Open Access Series in Informatics (OASIcs), Volume 142, pp. 9:1-9:8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{albert_et_al:OASIcs.FMBC.2026.9,
  author =	{Albert, Elvira and De Angelis, Emanuele and Di Ianni, Marco and Fioravanti, Fabio and Gordillo, Pablo},
  title =	{{Towards Property-Based Testing of Smart Contracts Using Gas Analysis}},
  booktitle =	{7th International Workshop on Formal Methods for Blockchains (FMBC 2026)},
  pages =	{9:1--9:8},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-424-6},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{142},
  editor =	{Bartoletti, Massimo and Marmsoler, Diego},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.FMBC.2026.9},
  URN =		{urn:nbn:de:0030-drops-257069},
  doi =		{10.4230/OASIcs.FMBC.2026.9},
  annote =	{Keywords: Property-based Testing, Blockchain, Ethereum, Gas}
}
Document
DOI: 10.4230/OASIcs.NINeS.2026.24
SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing

Authors: Siddhant Ray, Xi Jiang, Jack Luo, Nick Feamster, and Junchen Jiang

Published in: OASIcs, Volume 139, 1st New Ideas in Networked Systems (NINeS 2026)

Abstract
Low Latency, Low Loss, and Scalable Throughput (L4S), as an emerging router-queue management technique, has seen steady deployment in the industry. An L4S-enabled router assigns each packet to the queue based on the packet header marking. Currently, L4S employs per-flow queue selection, i.e., all packets of a flow are marked the same way and thus use the same queues, even though each packet is marked separately. However, this may hurt tail latency and latency-sensitive applications because transient congestion and queue buildups may only affect a fraction of packets in a flow. We present SwiftQueue, a new L4S queue-selection strategy in which a sender uses a novel per-packet latency predictor to pinpoint which packets likely have latency spikes or drops. The insight is that many packet-level latency variations result from complex interactions among recent packets at shared router queues. Yet, these intricate packet-level latency patterns are hard to learn efficiently by traditional models. Instead, SwiftQueue uses a custom Transformer, which is well-studied for its expressiveness on sequential patterns, to predict the next packet’s latency based on the latencies of recently received ACKs. Based on the predicted latency of each outgoing packet, SwiftQueue’s sender dynamically marks the L4S packet header to assign packets to potentially different queues, even within the same flow. Using real network traces, we show that SwiftQueue is 45-65% more accurate in predicting latency and its variations than state-of-art methods. Based on its latency prediction, SwiftQueue reduces the tail latency for L4S-enabled flows by 36-45%, compared with the existing L4S queue-selection method.
Cite as

Siddhant Ray, Xi Jiang, Jack Luo, Nick Feamster, and Junchen Jiang. SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing. In 1st New Ideas in Networked Systems (NINeS 2026). Open Access Series in Informatics (OASIcs), Volume 139, pp. 24:1-24:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ray_et_al:OASIcs.NINeS.2026.24,
  author =	{Ray, Siddhant and Jiang, Xi and Luo, Jack and Feamster, Nick and Jiang, Junchen},
  title =	{{SwiftQueue: Optimizing Low-Latency Applications with Swift Packet Queuing}},
  booktitle =	{1st New Ideas in Networked Systems (NINeS 2026)},
  pages =	{24:1--24:29},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-414-7},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{139},
  editor =	{Argyraki, Katerina and Panda, Aurojit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.NINeS.2026.24},
  URN =		{urn:nbn:de:0030-drops-256093},
  doi =		{10.4230/OASIcs.NINeS.2026.24},
  annote =	{Keywords: Latency prediction, L4S Queue Management}
}
Document
DOI: 10.4230/OASIcs.NINeS.2026.22
There Is More to Internet Invariants Than Meets the Eye

Authors: Chris Misa, Walter Willinger, Ramakrishnan Durairajan, and Reza Rejaie

Published in: OASIcs, Volume 139, 1st New Ideas in Networked Systems (NINeS 2026)

Abstract
A rich body of literature assembled over the last 30 years shows that traffic traversing wide-area Internet links is consistent with self-similar (temporal) scaling behavior and that sets of observed addresses have multifractal (spatial) scaling behavior. In view of this empirical evidence, these behaviors cannot be viewed as mere mathematical curiosities but should justifiably be called invariants of measured Internet traffic (Internet invariants, for short). At the same time, it is fair to say that the early architects of the Internet were largely unaware of these properties and certainly did not intend to design a network so that the traffic traversing its links would exhibit self-similar scaling in time or multifractal scaling in the IP address space. In this paper, we resolve this apparent disconnect between architectural intentions and observed behaviors by applying a three-part framework that leverages, at its core, the perspective of Highly Optimized Tolerance (HOT). In particular, we take inspiration from studies on the origins of (temporal) self-similarity in measured Internet traffic but focus on a fundamentally new approach to understanding multifractal (spatial) scaling behavior. Specifically, we examine whether this invariant can be viewed as a visible hallmark of underlying but largely unknown robust design efforts, and explore a reverse-engineering approach to determine the concrete nature of the constrained optimization problems that these robust designs solve. Based on the insights gained from such reverse-engineering efforts, we speculate on the benefits of future efforts at forward-engineering - systematically leveraging the identified robust designs in order to provide scientifically sound intellectual foundations and practical principles for designing future networked systems.
Cite as

Chris Misa, Walter Willinger, Ramakrishnan Durairajan, and Reza Rejaie. There Is More to Internet Invariants Than Meets the Eye. In 1st New Ideas in Networked Systems (NINeS 2026). Open Access Series in Informatics (OASIcs), Volume 139, pp. 22:1-22:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{misa_et_al:OASIcs.NINeS.2026.22,
  author =	{Misa, Chris and Willinger, Walter and Durairajan, Ramakrishnan and Rejaie, Reza},
  title =	{{There Is More to Internet Invariants Than Meets the Eye}},
  booktitle =	{1st New Ideas in Networked Systems (NINeS 2026)},
  pages =	{22:1--22:26},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-414-7},
  ISSN =	{2190-6807},
  year =	{2026},
  volume =	{139},
  editor =	{Argyraki, Katerina and Panda, Aurojit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.NINeS.2026.22},
  URN =		{urn:nbn:de:0030-drops-256077},
  doi =		{10.4230/OASIcs.NINeS.2026.22},
  annote =	{Keywords: Internet traffic, self-similarity, multifractal scaling, reverse-engineering}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2026.12
The Complexity of Finding Missing Answer Repairs

Authors: Jesse Comer and Val Tannen

Published in: LIPIcs, Volume 365, 29th International Conference on Database Theory (ICDT 2026)

Abstract
We investigate the problem of identifying database repairs for missing tuples in query answers. We show that when the query is part of the input - the combined complexity setting - determining whether or not a repair exists is polynomial-time equivalent to the satisfiability problem for classes of queries admitting a weak form of projection and selection. We then identify the sub-classes of unions of conjunctive queries with negated atoms, defined by the relational algebra operations permitted to appear in the query, for which the minimal repair problem can be solved in polynomial time. In contrast, we show that the problem is NP-hard, as well as set cover-hard to approximate via strict reductions, whenever both projection and join are permitted in the input query. Additionally, we show that finding the size of a minimal repair for unions of conjunctive queries (with negated atoms permitted) is OptP[log(n)]-complete, while computing a minimal repair is possible with O(n²) queries to an NP oracle. With recursion permitted, the combined complexity of all of these variants increases significantly, with an EXP lower bound. However, from the data complexity perspective, we show that minimal repairs can be identified in polynomial time for all queries expressible as semi-positive datalog programs.
Cite as

Jesse Comer and Val Tannen. The Complexity of Finding Missing Answer Repairs. In 29th International Conference on Database Theory (ICDT 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 365, pp. 12:1-12:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{comer_et_al:LIPIcs.ICDT.2026.12,
  author =	{Comer, Jesse and Tannen, Val},
  title =	{{The Complexity of Finding Missing Answer Repairs}},
  booktitle =	{29th International Conference on Database Theory (ICDT 2026)},
  pages =	{12:1--12:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-413-0},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{365},
  editor =	{ten Cate, Balder and Funk, Maurice},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2026.12},
  URN =		{urn:nbn:de:0030-drops-256265},
  doi =		{10.4230/LIPIcs.ICDT.2026.12},
  annote =	{Keywords: Missing answers, database repairs, datalog, computational complexity}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.32
Vanishing Signatures, Orbit Closure, and the Converse of the Holant Theorem

Authors: Jin-Yi Cai and Ben Young

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Valiant’s Holant theorem is a powerful tool for algorithms and reductions for counting problems. It states that if two sets ℱ and 𝒢 of tensors (a.k.a. constraint functions or signatures) are related by a holographic transformation, then ℱ and 𝒢 are Holant-indistinguishable, i.e., every tensor network using tensors from ℱ, respectively from 𝒢, contracts to the same value. Xia (ICALP 2010) conjectured the converse of the Holant theorem, but a counterexample was found based on vanishing signatures, those which are Holant-indistinguishable from 0. We prove two near-converses of the Holant theorem using techniques from invariant theory. (I) Holant-indistinguishable ℱ and 𝒢 always admit two sequences of holographic transformations mapping them arbitrarily close to each other, i.e., their GL_q-orbit closures intersect. (II) We show that vanishing signatures are the only true obstacle to a converse of the Holant theorem. As corollaries of the two theorems we obtain the first characterization of homomorphism-indistinguishability over graphs of bounded degree, a long standing open problem, and show that two graphs with invertible adjacency matrices are isomorphic if and only if they are homomorphism-indistinguishable over graphs with maximum degree at most three. We also show that Holant-indistinguishability is complete for a complexity class TOCI introduced by Lysikov and Walter [Vladimir Lysikov and Michael Walter, 2024], and hence hard for graph isomorphism.
Cite as

Jin-Yi Cai and Ben Young. Vanishing Signatures, Orbit Closure, and the Converse of the Holant Theorem. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 32:1-32:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cai_et_al:LIPIcs.ITCS.2026.32,
  author =	{Cai, Jin-Yi and Young, Ben},
  title =	{{Vanishing Signatures, Orbit Closure, and the Converse of the Holant Theorem}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{32:1--32:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.32},
  URN =		{urn:nbn:de:0030-drops-253198},
  doi =		{10.4230/LIPIcs.ITCS.2026.32},
  annote =	{Keywords: Holant, Orbit Closure Intersection, Homomorphism Indistinguishability, Tensor Network}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.15
How to Use Nondeterminism in Cryptography

Authors: Marshall Ball and Peter Crawford-Kahrl

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Nondeterministic reductions have yielded powerful results in the theory of computational complexity, yet are effectively useless in a cryptographic context. The reason for this is simple, a nondeterministic polynomial time adversary can trivially break almost any cryptographic primitive by simply guessing the "key." In order to use this powerful nondeterministic tool kit in the cryptographic context, we initiate the study of cryptography against adversaries with limited nondeterminism: polynomial time nondeterministic algorithms that are restricted to just a few bits of nondeterminism. We demonstrate that limited nondeterministic security is sufficient to prove two foundational results that have eluded our grasp for decades: dream hardness amplification, and extracting ω(log n) hardcore bits.
Cite as

Marshall Ball and Peter Crawford-Kahrl. How to Use Nondeterminism in Cryptography. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 15:1-15:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ball_et_al:LIPIcs.ITCS.2026.15,
  author =	{Ball, Marshall and Crawford-Kahrl, Peter},
  title =	{{How to Use Nondeterminism in Cryptography}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{15:1--15:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.15},
  URN =		{urn:nbn:de:0030-drops-253024},
  doi =		{10.4230/LIPIcs.ITCS.2026.15},
  annote =	{Keywords: limited nondeterminism, cryptography, computational complexity, hardness amplification, pseudorandom generators, hardcore bits}
}
Document
Research
DOI: 10.4230/TGDK.3.3.4
Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web

Authors: Florian Ruosch, Cristina Sarasua, and Abraham Bernstein

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
In Argument Mining, predicting argumentative relations between texts (or spans) remains one of the most challenging aspects, even more so in the cross-document setting. This paper makes three key contributions to advance research in this domain. We first extend an existing dataset, the Sci-Arg corpus, by annotating it with explicit inter-document argumentative relations, thereby allowing arguments to be distributed over several documents forming an Argument Web; these new annotations are published using Semantic Web technologies (RDF, OWL). Second, we explore and evaluate three automated approaches for predicting these inter-document argumentative relations, establishing critical baselines on the new dataset. We find that a simple classifier based on discourse indicators with access to context outperforms neural methods. Third, we conduct a comparative analysis of these approaches for both intra- and inter-document settings, identifying statistically significant differences in results that indicate the necessity of distinguishing between these two scenarios. Our findings highlight significant challenges in this complex domain and open crucial avenues for future research on the Argument Web of Science, particularly for those interested in leveraging Semantic Web technologies and knowledge graphs to understand scholarly discourse. With this, we provide the first stepping stones in the form of a benchmark dataset, three baseline methods, and an initial analysis for a systematic exploration of this field relevant to the Web of Data and Science.
Cite as

Florian Ruosch, Cristina Sarasua, and Abraham Bernstein. Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 4:1-4:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ruosch_et_al:TGDK.3.3.4,
  author =	{Ruosch, Florian and Sarasua, Cristina and Bernstein, Abraham},
  title =	{{Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:33},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.4},
  URN =		{urn:nbn:de:0030-drops-252159},
  doi =		{10.4230/TGDK.3.3.4},
  annote =	{Keywords: Argument Mining, Large Language Models, Knowledge Graphs, Link Prediction}
}
Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.68
Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree

Authors: Xiaoyu Chen and Weiming Feng

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
We develop a new framework to prove the mixing or relaxation time for the Glauber dynamics on spin systems with unbounded degree. It works for general spin systems including both 2-spin and multi-spin systems. As applications for this approach: - We prove the optimal O(n) relaxation time for the Glauber dynamics of random q-list-coloring on an n-vertices triangle-tree graph with maximum degree Δ such that q/Δ > α^⋆, where α^⋆ ≈ 1.763 is the unique positive solution of the equation α = exp(1/α). This improves the n^{1+o(1)} relaxation time for Glauber dynamics obtained by the previous work of Jain, Pham, and Vuong (2022). Besides, our framework can also give a near-linear time sampling algorithm under the same condition. - We prove the optimal O(n) relaxation time and near-optimal Õ(n) mixing time for the Glauber dynamics on hardcore models with parameter λ in balanced bipartite graphs such that λ < λ_c(Δ_L) for the max degree Δ_L in left part and the max degree Δ_R of right part satisfies Δ_R = O(Δ_L). This improves the previous result by Chen, Liu, and Yin (2023). At the heart of our proof is the notion of coupling independence which allows us to consider multiple vertices as a huge single vertex with exponentially large domain and do a "coarse-grained" local-to-global argument on spin systems. The technique works for general (multi) spin systems and helps us obtain some new comparison results for Glauber dynamics.
Cite as

Xiaoyu Chen and Weiming Feng. Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 68:1-68:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chen_et_al:LIPIcs.APPROX/RANDOM.2025.68,
  author =	{Chen, Xiaoyu and Feng, Weiming},
  title =	{{Rapid Mixing via Coupling Independence for Spin Systems with Unbounded Degree}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{68:1--68:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  URN =		{urn:nbn:de:0030-drops-244345},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.68},
  annote =	{Keywords: coupling independence, Glauber dynamics, mixing times, relaxation times, spin systems}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.14
Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms

Authors: Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
We introduce a quantum dynamic programming framework that allows us to directly extend to the quantum realm a large body of classical dynamic programming algorithms. The corresponding quantum dynamic programming algorithms retain the same space complexity as their classical counterpart, while achieving a computational speedup. For a combinatorial (search or optimization) problem P and an instance I of P, such a speedup can be expressed in terms of the average degree δ of the {dependency digraph} G_𝒫(I) of I, determined by a recursive formulation of P. The nodes of this graph are the subproblems of P induced by I and its arcs are directed from each subproblem to those on whose solution it relies. In particular, our framework allows us to solve the considered problems in Õ(|V(G_𝒫(I))| √δ) time. As an example, we obtain a quantum version of the Bellman-Ford algorithm for computing shortest paths from a single source vertex to all the other vertices in a weighted n-vertex digraph with m edges that runs in Õ(n√{nm}) time, which improves the best known classical upper bound when m ∈ Ω(n^{1.4}).
Cite as

Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg. Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 14:1-14:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{caroppo_et_al:LIPIcs.WADS.2025.14,
  author =	{Caroppo, Susanna and Da Lozzo, Giordano and Di Battista, Giuseppe and Goodrich, Michael T. and N\"{o}llenburg, Martin},
  title =	{{Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{14:1--14:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.14},
  URN =		{urn:nbn:de:0030-drops-242454},
  doi =		{10.4230/LIPIcs.WADS.2025.14},
  annote =	{Keywords: Dynamic Programming, Quantum Algorithms, Quantum Random Access Memory}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.23
Which Graph Motif Parameters Count?

Authors: Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
For a fixed graph H, the function #Ind(H → ⋆) maps graphs G to the count of induced H-copies in G; this function obviously "counts something" in that it has a combinatorial interpretation. Linear combinations of such functions are called graph motif parameters and have recently received significant attention in counting complexity after a seminal paper by Curticapean, Dell and Marx (STOC'17). We show that, among linear combinations of functions #Ind(H → ⋆) involving only graphs H without isolated vertices, precisely those with positive integer coefficients maintain a combinatorial interpretation. It is important to note that graph motif parameters can be nonnegative for all inputs G, even when some coefficients are negative. Formally, we show that evaluating any graph motif parameter with a negative coefficient is impossible in an oracle variant of #P, where an implicit graph is accessed by oracle queries. Our proof follows the classification of the relativizing closure properties of #P by Hertrampf, Vollmer, and Wagner (SCT'95) and the framework developed by Ikenmeyer and Pak (STOC'22), but our application of the required Ramsey theorem turns out to be more subtle, as graphs do not have the required Ramsey property. Our techniques generalize from graphs to relational structures, including colored graphs. Vastly generalizing this, we introduce motif parameters over categories that count occurrences of sub-objects in the category. We then prove a general dichotomy theorem that characterizes which such parameters have a combinatorial interpretation. Using known results in Ramsey theory for categories, we obtain a dichotomy for motif parameters of finite vector spaces as well as parameter sets.
Cite as

Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer. Which Graph Motif Parameters Count?. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 23:1-23:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{blaser_et_al:LIPIcs.MFCS.2025.23,
  author =	{Bl\"{a}ser, Markus and Curticapean, Radu and D\"{o}rfler, Julian and Ikenmeyer, Christian},
  title =	{{Which Graph Motif Parameters Count?}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{23:1--23:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.23},
  URN =		{urn:nbn:de:0030-drops-241307},
  doi =		{10.4230/LIPIcs.MFCS.2025.23},
  annote =	{Keywords: Graph motif parameters, Combinatorics, Combinatorial Interpretability}
}
Document
DOI: 10.4230/LIPIcs.DNA.31.4
Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems

Authors: Inhoo Lee, Salvador Buse, and Erik Winfree

Published in: LIPIcs, Volume 347, 31st International Conference on DNA Computing and Molecular Programming (DNA 31) (2025)

Abstract
Many molecular systems are best understood in terms of prototypical species and reactions. The central dogma and related biochemistry are rife with examples: gene i is transcribed into RNA i, which is translated into protein i; kinase n phosphorylates substrate m; protein p dimerizes with protein q. Engineered nucleic acid systems also often have this form: oligonucleotide i hybridizes to complementary oligonucleotide j; signal strand n displaces the output of seesaw gate m; hairpin p triggers the opening of target q. When there are many variants of a small number of prototypes, it can be conceptually cleaner and computationally more efficient to represent the full system in terms of indexed species (e.g. for dimerization, M_p, D_pq) and indexed reactions (M_p + M_q → D_pq). Here, we formalize the Indexed Chemical Reaction Network (ICRN) model and describe a Python software package designed to simulate such systems in the well-mixed and reaction-diffusion settings, using a differentiable programming framework originally developed for large-scale neural network models, taking advantage of GPU acceleration when available. Notably, this framework makes it straightforward to train the models’ initial conditions and rate constants to optimize a target behavior, such as matching experimental data, performing a computation, or exhibiting spatial pattern formation. The natural map of indexed chemical reaction networks onto neural network formalisms provides a tangible yet general perspective for translating concepts and techniques from the theory and practice of neural computation into the design of biomolecular systems.
Cite as

Inhoo Lee, Salvador Buse, and Erik Winfree. Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. In 31st International Conference on DNA Computing and Molecular Programming (DNA 31). Leibniz International Proceedings in Informatics (LIPIcs), Volume 347, pp. 4:1-4:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lee_et_al:LIPIcs.DNA.31.4,
  author =	{Lee, Inhoo and Buse, Salvador and Winfree, Erik},
  title =	{{Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems}},
  booktitle =	{31st International Conference on DNA Computing and Molecular Programming (DNA 31)},
  pages =	{4:1--4:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-399-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{347},
  editor =	{Schaeffer, Josie and Zhang, Fei},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.31.4},
  URN =		{urn:nbn:de:0030-drops-238534},
  doi =		{10.4230/LIPIcs.DNA.31.4},
  annote =	{Keywords: Differentiable Programming, Chemical Reaction Networks, Reaction-Diffusion Systems}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.3
Enabling Containerisation of Distributed Applications with Real-Time Constraints

Authors: Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Containerisation is becoming a cornerstone of modern distributed systems, thanks to their lightweight virtualisation, high portability, and seamless integration with orchestration tools such as Kubernetes. The usage of containers has also gained traction in real-time cyber-physical systems, such as software-defined vehicles, which are characterised by strict timing requirements to ensure safety and performance. Nevertheless, ensuring real-time execution of co-located containers is challenging because of mutual interference due to the sharing of the same processing hardware. Existing parallel computing frameworks such as Ray and its Kubernetes-enabled variant, KubeRay, excel in distributed computation but lack support for scheduling policies that allow guaranteeing real-time timing constraints and CPU resource isolation between containers, such as the SCHED_DEADLINE policy of Linux. To fill this gap, this paper extends Ray to support real-time containers that leverage SCHED_DEADLINE. To this end, we propose KubeDeadline, a novel, modular Kubernetes extension to support SCHED_DEADLINE. We evaluate our approach through extensive experiments, using synthetic workloads and a case study based on the MobileNet and EfficientNet deep neural networks. Our evaluation shows that KubeDeadline ensures deadline compliance in all synthetic workloads, adds minimal deployment overhead (in the order of milliseconds), and achieves lower worst-case response times, up to 4 times lower, than vanilla Kubernetes under background interference.
Cite as

Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi. Enabling Containerisation of Distributed Applications with Real-Time Constraints. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 3:1-3:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{samimi_et_al:LIPIcs.ECRTS.2025.3,
  author =	{Samimi, Nasim and Abeni, Luca and Casini, Daniel and Marinoni, Mauro and Basten, Twan and Nasri, Mitra and Geilen, Marc and Biondi, Alessandro},
  title =	{{Enabling Containerisation of Distributed Applications with Real-Time Constraints}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{3:1--3:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.3},
  URN =		{urn:nbn:de:0030-drops-235816},
  doi =		{10.4230/LIPIcs.ECRTS.2025.3},
  annote =	{Keywords: Kubernetes, real-time containers, SCHED\underlineDEADLINE, KubeRay}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.131
Deterministic Complexity Analysis of Hermitian Eigenproblems

Authors: Aleksandros Sobczyk

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
In this work we revisit the arithmetic and bit complexity of Hermitian eigenproblems. Recently, [BGVKS, FOCS 2020] proved that a (non-Hermitian) matrix A can be diagonalized with a randomized algorithm in O(n^{ω}log²(n/ε)) arithmetic operations, where ω≲ 2.371 is the square matrix multiplication exponent, and [Shah, SODA 2025] significantly improved the bit complexity for the Hermitian case. Our main goal is to obtain similar deterministic complexity bounds for various Hermitian eigenproblems. In the Real RAM model, we show that a Hermitian matrix can be diagonalized deterministically in O(n^{ω}log(n)+n²polylog(n/ε)) arithmetic operations, improving the classic deterministic Õ(n³) algorithms, and derandomizing the aforementioned state-of-the-art. The main technical step is a complete, detailed analysis of a well-known divide-and-conquer tridiagonal eigensolver of Gu and Eisenstat [GE95], when accelerated with the Fast Multipole Method, asserting that it can accurately diagonalize a symmetric tridiagonal matrix in nearly-O(n²) operations. In finite precision, we show that an algorithm by Schönhage [Sch72] to reduce a Hermitian matrix to tridiagonal form is stable in the floating point model, using O(log(n/ε)) bits of precision. This leads to a deterministic algorithm to compute all the eigenvalues of a Hermitian matrix in O(n^{ω}ℱ(log(n/ε)) + n²polylog(n/ε)) bit operations, where ℱ(b) ∈ Õ(b) is the bit complexity of a single floating point operation on b bits. This improves the best known Õ(n³) deterministic and O(n^{ω}log²(n/ε)ℱ(log(n/ε))) randomized complexities. We conclude with some other useful subroutines such as computing spectral gaps, condition numbers, and spectral projectors, and with some open problems.
Cite as

Aleksandros Sobczyk. Deterministic Complexity Analysis of Hermitian Eigenproblems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 131:1-131:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{sobczyk:LIPIcs.ICALP.2025.131,
  author =	{Sobczyk, Aleksandros},
  title =	{{Deterministic Complexity Analysis of Hermitian Eigenproblems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{131:1--131:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.131},
  URN =		{urn:nbn:de:0030-drops-235081},
  doi =		{10.4230/LIPIcs.ICALP.2025.131},
  annote =	{Keywords: Hermitian eigenproblem, eigenvalues, SVD, tridiagonal reduction, matrix multiplication time, diagonalization, bit complexity}
}
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