12 Search Results for "Gandon, Fabien"

Document
Survey
DOI: 10.4230/TGDK.4.1.2
Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support

Authors: Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1

Abstract
Our culture, history and world are in constant motion, continuously shaped by the flow of time, evolving narratives, and shifting relationships. Capturing this temporal complexity within cultural heritage (CH) knowledge graphs is essential for preserving the dynamic nature of human heritage. However, standard RDF predicates fail to effectively model the temporal aspects of cultural data, such as changing facts, evolving relationships, and temporal concepts. Over the past two decades, a variety of RDF-based approaches have been proposed to address this limitation, yet guidance is missing on which method best suits specific CH contexts. This paper presents a systematic evaluation of temporal RDF modelling approaches from a CH perspective. Based on an analysis of real-world CH use cases, core temporal requirements are identified that reflect both modelling expressivity and practical concerns. Six prominent approaches - RDF*, tRDF, Named Graphs, Singleton Property, N-ary Relations, and 4D Fluents - are assessed across these requirements. Our findings reveal that no single solution fits all scenarios, but suitable approaches can be selected based on project-specific priorities. To support practitioners, a decision-support tool is introduced to guide them in selecting the most suitable extension for their specific needs. This work provides practical guidance for CH modelling and contributes to the broader development of temporally aware Linked Data.
Cite as

Oleksandra Bruns, Jörg Waitelonis, Jeff Z. Pan, and Harald Sack. Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 2:1-2:46, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@Article{bruns_et_al:TGDK.4.1.2,
  author =	{Bruns, Oleksandra and Waitelonis, J\"{o}rg and Pan, Jeff Z. and Sack, Harald},
  title =	{{Temporal Modelling in Cultural Heritage Knowledge Graphs: Use Cases, Requirements, Evaluation, and Decision Support}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{2:1--2:46},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.2},
  URN =		{urn:nbn:de:0030-drops-256871},
  doi =		{10.4230/TGDK.4.1.2},
  annote =	{Keywords: Temporal Data Representation, RDF Extensions, Cultural Heritage, Knowledge Graphs}
}
Document
Research
DOI: 10.4230/TGDK.3.1.4
CoaKG: A Contextualized Knowledge Graph Approach for Exploratory Search and Decision Making

Authors: Veronica dos Santos, Daniel Schwabe, Altigran Soares da Silva, and Sérgio Lifschitz

Published in: TGDK, Volume 3, Issue 1 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 1

Abstract
In decision-making scenarios, an information need arises due to a knowledge gap when a decision-maker needs more knowledge to make a decision. Users may take the initiative to acquire knowledge to fill this gap through exploratory search approaches using Knowledge Graphs (KGs) as information sources, but their queries can be incomplete, inaccurate, and ambiguous. Although KGs have great potential for exploratory search, they are incomplete by nature. Besides, for both Crowd-sourced KGs and KGs constructed by integrating several different information sources of varying quality to be effectively consumed, there is a need for a Trust Layer. Our research aims to enrich and allow querying KGs to support context-aware exploration in decision-making scenarios. We propose a layered architecture for Context Augmented Knowledge Graphs-based Decision Support Systems with a Knowledge Layer that operates under a Dual Open World Assumption (DOWA). Under DOWA, the evaluation of the truthfulness of the information obtained from KGs depends on the context of its claims and the tasks carried out or intended (purpose). The Knowledge Layer comprises a Context Augmented KG (CoaKG) and a CoaKG Query Engine. The CoaKG contains contextual mappings to identify explicit context and rules to infer implicit context. The CoaKG Query Engine is designed as a query-answering approach that retrieves all contextualized answers from the CoaKG. A Proof of Concept (PoC) based on Wikidata was developed to evaluate the effectiveness of the Knowledge Layer.
Cite as

Veronica dos Santos, Daniel Schwabe, Altigran Soares da Silva, and Sérgio Lifschitz. CoaKG: A Contextualized Knowledge Graph Approach for Exploratory Search and Decision Making. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 1, pp. 4:1-4:27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{dossantos_et_al:TGDK.3.1.4,
  author =	{dos Santos, Veronica and Schwabe, Daniel and da Silva, Altigran Soares and Lifschitz, S\'{e}rgio},
  title =	{{CoaKG: A Contextualized Knowledge Graph Approach for Exploratory Search and Decision Making}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:27},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.1.4},
  URN =		{urn:nbn:de:0030-drops-236685},
  doi =		{10.4230/TGDK.3.1.4},
  annote =	{Keywords: Knowledge Graphs, Context Search, Decision Support}
}
Document
Survey
DOI: 10.4230/TGDK.3.1.3
Uncertainty Management in the Construction of Knowledge Graphs: A Survey

Authors: Lucas Jarnac, Yoan Chabot, and Miguel Couceiro

Published in: TGDK, Volume 3, Issue 1 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 1

Abstract
Knowledge Graphs (KGs) are a major asset for companies thanks to their great flexibility in data representation and their numerous applications, e.g., vocabulary sharing, Q&A or recommendation systems. To build a KG, it is a common practice to rely on automatic methods for extracting knowledge from various heterogeneous sources. However, in a noisy and uncertain world, knowledge may not be reliable and conflicts between data sources may occur. Integrating unreliable data would directly impact the use of the KG, therefore such conflicts must be resolved. This could be done manually by selecting the best data to integrate. This first approach is highly accurate, but costly and time-consuming. That is why recent efforts focus on automatic approaches, which represent a challenging task since it requires handling the uncertainty of extracted knowledge throughout its integration into the KG. We survey state-of-the-art approaches in this direction and present constructions of both open and enterprise KGs. We then describe different knowledge extraction methods and discuss downstream tasks after knowledge acquisition, including KG completion using embedding models, knowledge alignment, and knowledge fusion in order to address the problem of knowledge uncertainty in KG construction. We conclude with a discussion on the remaining challenges and perspectives when constructing a KG taking into account uncertainty.
Cite as

Lucas Jarnac, Yoan Chabot, and Miguel Couceiro. Uncertainty Management in the Construction of Knowledge Graphs: A Survey. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 1, pp. 3:1-3:48, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{jarnac_et_al:TGDK.3.1.3,
  author =	{Jarnac, Lucas and Chabot, Yoan and Couceiro, Miguel},
  title =	{{Uncertainty Management in the Construction of Knowledge Graphs: A Survey}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:48},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.1.3},
  URN =		{urn:nbn:de:0030-drops-233733},
  doi =		{10.4230/TGDK.3.1.3},
  annote =	{Keywords: Knowledge reconciliation, Uncertainty, Heterogeneous sources, Knowledge graph construction}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.32
A Faster Algorithm for Constrained Correlation Clustering

Authors: Nick Fischer, Evangelos Kipouridis, Jonas Klausen, and Mikkel Thorup

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
In the Correlation Clustering problem we are given n nodes, and a preference for each pair of nodes indicating whether we prefer the two endpoints to be in the same cluster or not. The output is a clustering inducing the minimum number of violated preferences. In certain cases, however, the preference between some pairs may be too important to be violated. The constrained version of this problem specifies pairs of nodes that must be in the same cluster as well as pairs that must not be in the same cluster (hard constraints). The output clustering has to satisfy all hard constraints while minimizing the number of violated preferences. Constrained Correlation Clustering is APX-Hard and has been approximated within a factor 3 by van Zuylen et al. [SODA '07]. Their algorithm is based on rounding an LP with Θ(n³) constraints, resulting in an Ω(n^{3ω}) running time. In this work, using a more combinatorial approach, we show how to approximate this problem significantly faster at the cost of a slightly weaker approximation factor. In particular, our algorithm runs in Õ(n³) time (notice that the input size is Θ(n²)) and approximates Constrained Correlation Clustering within a factor 16. To achieve our result we need properties guaranteed by a particular influential algorithm for (unconstrained) Correlation Clustering, the CC-PIVOT algorithm. This algorithm chooses a pivot node u, creates a cluster containing u and all its preferred nodes, and recursively solves the rest of the problem. It is known that selecting pivots at random gives a 3-approximation. As a byproduct of our work, we provide a derandomization of the CC-PIVOT algorithm that still achieves the 3-approximation; furthermore, we show that there exist instances where no ordering of the pivots can give a (3-ε)-approximation, for any constant ε. Finally, we introduce a node-weighted version of Correlation Clustering, which can be approximated within factor 3 using our insights on Constrained Correlation Clustering. As the general weighted version of Correlation Clustering would require a major breakthrough to approximate within a factor o(log n), Node-Weighted Correlation Clustering may be a practical alternative.
Cite as

Nick Fischer, Evangelos Kipouridis, Jonas Klausen, and Mikkel Thorup. A Faster Algorithm for Constrained Correlation Clustering. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 32:1-32:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fischer_et_al:LIPIcs.STACS.2025.32,
  author =	{Fischer, Nick and Kipouridis, Evangelos and Klausen, Jonas and Thorup, Mikkel},
  title =	{{A Faster Algorithm for Constrained Correlation Clustering}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{32:1--32:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.32},
  URN =		{urn:nbn:de:0030-drops-228585},
  doi =		{10.4230/LIPIcs.STACS.2025.32},
  annote =	{Keywords: Clustering, Constrained Correlation Clustering, Approximation}
}
Document
Resource Paper
DOI: 10.4230/TGDK.2.2.5
The Reasonable Ontology Templates Framework

Authors: Martin Georg Skjæveland and Leif Harald Karlsen

Published in: TGDK, Volume 2, Issue 2 (2024): Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 2, Issue 2

Abstract
Reasonable Ontology Templates (OTTR) is a templating language for representing and instantiating patterns. It is based on simple and generic, but powerful, mechanisms such as recursive macro expansion, term substitution and type systems, and is designed particularly for building and maintaining RDF knowledge graphs and OWL ontologies. In this resource paper, we present the formal specifications that define the OTTR framework. This includes the fundamentals of the OTTR language and the adaptions to make it fit with standard semantic web languages, and two serialization formats developed for semantic web practitioners. We also present the OTTR framework’s support for documenting, publishing and managing template libraries, and for tools for practical bulk instantiation of templates from tabular data and queryable data sources. The functionality of the OTTR framework is available for use through Lutra, an open-source reference implementation, and other independent implementations. We report on the use and impact of OTTR by presenting selected industrial use cases. Finally, we reflect on some design considerations of the language and framework and present ideas for future work.
Cite as

Martin Georg Skjæveland and Leif Harald Karlsen. The Reasonable Ontology Templates Framework. In Special Issue on Resources for Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 2, Issue 2, pp. 5:1-5:54, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{skjaeveland_et_al:TGDK.2.2.5,
  author =	{Skj{\ae}veland, Martin Georg and Karlsen, Leif Harald},
  title =	{{The Reasonable Ontology Templates Framework}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:54},
  ISSN =	{2942-7517},
  year =	{2024},
  volume =	{2},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.2.2.5},
  URN =		{urn:nbn:de:0030-drops-225896},
  doi =		{10.4230/TGDK.2.2.5},
  annote =	{Keywords: Ontology engineering, Ontology design patterns, Template mechanism, Macros}
}
Document
Vision
DOI: 10.4230/TGDK.1.1.10
Multilingual Knowledge Graphs and Low-Resource Languages: A Review

Authors: Lucie-Aimée Kaffee, Russa Biswas, C. Maria Keet, Edlira Kalemi Vakaj, and Gerard de Melo

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
There is a lack of multilingual data to support applications in a large number of languages, especially for low-resource languages. Knowledge graphs (KG) could contribute to closing the gap of language support by providing easily accessible, machine-readable, multilingual linked data, which can be reused across applications. In this paper, we provide an overview of work in the domain of multilingual KGs with a focus on low-resource languages. We review the current state of multilingual KGs along with the different aspects that are crucial for creating KGs with language coverage in mind. Special consideration is given to challenges particular to low-resource languages in KGs. We further provide an overview of applications that yield multilingual KG information as well as downstream applications reusing such multilingual data. Finally, we explore open problems regarding multilingual KGs with a focus on low-resource languages.
Cite as

Lucie-Aimée Kaffee, Russa Biswas, C. Maria Keet, Edlira Kalemi Vakaj, and Gerard de Melo. Multilingual Knowledge Graphs and Low-Resource Languages: A Review. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 10:1-10:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{kaffee_et_al:TGDK.1.1.10,
  author =	{Kaffee, Lucie-Aim\'{e}e and Biswas, Russa and Keet, C. Maria and Vakaj, Edlira Kalemi and de Melo, Gerard},
  title =	{{Multilingual Knowledge Graphs and Low-Resource Languages: A Review}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{10:1--10:19},
  ISSN =	{2942-7517},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.10},
  URN =		{urn:nbn:de:0030-drops-194845},
  doi =		{10.4230/TGDK.1.1.10},
  annote =	{Keywords: knowledge graphs, multilingual, low-resource languages, review}
}
Document
Survey
DOI: 10.4230/TGDK.1.1.11
How Does Knowledge Evolve in Open Knowledge Graphs?

Authors: Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Openly available, collaboratively edited Knowledge Graphs (KGs) are key platforms for the collective management of evolving knowledge. The present work aims t o provide an analysis of the obstacles related to investigating and processing specifically this central aspect of evolution in KGs. To this end, we discuss (i) the dimensions of evolution in KGs, (ii) the observability of evolution in existing, open, collaboratively constructed Knowledge Graphs over time, and (iii) possible metrics to analyse this evolution. We provide an overview of relevant state-of-the-art research, ranging from metrics developed for Knowledge Graphs specifically to potential methods from related fields such as network science. Additionally, we discuss technical approaches - and their current limitations - related to storing, analysing and processing large and evolving KGs in terms of handling typical KG downstream tasks.
Cite as

Axel Polleres, Romana Pernisch, Angela Bonifati, Daniele Dell'Aglio, Daniil Dobriy, Stefania Dumbrava, Lorena Etcheverry, Nicolas Ferranti, Katja Hose, Ernesto Jiménez-Ruiz, Matteo Lissandrini, Ansgar Scherp, Riccardo Tommasini, and Johannes Wachs. How Does Knowledge Evolve in Open Knowledge Graphs?. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 11:1-11:59, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{polleres_et_al:TGDK.1.1.11,
  author =	{Polleres, Axel and Pernisch, Romana and Bonifati, Angela and Dell'Aglio, Daniele and Dobriy, Daniil and Dumbrava, Stefania and Etcheverry, Lorena and Ferranti, Nicolas and Hose, Katja and Jim\'{e}nez-Ruiz, Ernesto and Lissandrini, Matteo and Scherp, Ansgar and Tommasini, Riccardo and Wachs, Johannes},
  title =	{{How Does Knowledge Evolve in Open Knowledge Graphs?}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{11:1--11:59},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.11},
  URN =		{urn:nbn:de:0030-drops-194855},
  doi =		{10.4230/TGDK.1.1.11},
  annote =	{Keywords: KG evolution, temporal KG, versioned KG, dynamic KG}
}
Document
Vision
DOI: 10.4230/TGDK.1.1.13
Autonomy in the Age of Knowledge Graphs: Vision and Challenges

Authors: Jean-Paul Calbimonte, Andrei Ciortea, Timotheus Kampik, Simon Mayer, Terry R. Payne, Valentina Tamma, and Antoine Zimmermann

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
In this position paper, we propose that Knowledge Graphs (KGs) are one of the prime approaches to support the programming of autonomous software systems at the knowledge level. From this viewpoint, we survey how KGs can support different dimensions of autonomy in such systems: For example, the autonomy of systems with respect to their environment, or with respect to organisations; and we discuss related practical and research challenges. We emphasise that KGs need to be able to support systems of autonomous software agents that are themselves highly heterogeneous, which limits how these systems may use KGs. Furthermore, these heterogeneous software agents may populate highly dynamic environments, which implies that they require adaptive KGs. The scale of the envisioned systems - possibly stretching to the size of the Internet - highlights the maintainability of the underlying KGs that need to contain large-scale knowledge, which requires that KGs are maintained jointly by humans and machines. Furthermore, autonomous agents require procedural knowledge, and KGs should hence be explored more towards the provisioning of such knowledge to augment autonomous behaviour. Finally, we highlight the importance of modelling choices, including with respect to the selected abstraction level when modelling and with respect to the provisioning of more expressive constraint languages.
Cite as

Jean-Paul Calbimonte, Andrei Ciortea, Timotheus Kampik, Simon Mayer, Terry R. Payne, Valentina Tamma, and Antoine Zimmermann. Autonomy in the Age of Knowledge Graphs: Vision and Challenges. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 13:1-13:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{calbimonte_et_al:TGDK.1.1.13,
  author =	{Calbimonte, Jean-Paul and Ciortea, Andrei and Kampik, Timotheus and Mayer, Simon and Payne, Terry R. and Tamma, Valentina and Zimmermann, Antoine},
  title =	{{Autonomy in the Age of Knowledge Graphs: Vision and Challenges}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{13:1--13:22},
  ISSN =	{2942-7517},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.13},
  URN =		{urn:nbn:de:0030-drops-194872},
  doi =		{10.4230/TGDK.1.1.13},
  annote =	{Keywords: Knowledge graphs, Autonomous Systems}
}
Document
Position
DOI: 10.4230/TGDK.1.1.5
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Authors: Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Cite as

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Škoda, and Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 5:1-5:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{chen_et_al:TGDK.1.1.5,
  author =	{Chen, Jiaoyan and Dong, Hang and Hastings, Janna and Jim\'{e}nez-Ruiz, Ernesto and L\'{o}pez, Vanessa and Monnin, Pierre and Pesquita, Catia and \v{S}koda, Petr and Tamma, Valentina},
  title =	{{Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{5:1--5:33},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.5},
  URN =		{urn:nbn:de:0030-drops-194791},
  doi =		{10.4230/TGDK.1.1.5},
  annote =	{Keywords: Knowledge graphs, Life science, Knowledge discovery, Explainable AI}
}
Document
Vision
DOI: 10.4230/TGDK.1.1.3
Knowledge Engineering Using Large Language Models

Authors: Bradley P. Allen, Lise Stork, and Paul Groth

Published in: TGDK, Volume 1, Issue 1 (2023): Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge, Volume 1, Issue 1

Abstract
Knowledge engineering is a discipline that focuses on the creation and maintenance of processes that generate and apply knowledge. Traditionally, knowledge engineering approaches have focused on knowledge expressed in formal languages. The emergence of large language models and their capabilities to effectively work with natural language, in its broadest sense, raises questions about the foundations and practice of knowledge engineering. Here, we outline the potential role of LLMs in knowledge engineering, identifying two central directions: 1) creating hybrid neuro-symbolic knowledge systems; and 2) enabling knowledge engineering in natural language. Additionally, we formulate key open research questions to tackle these directions.
Cite as

Bradley P. Allen, Lise Stork, and Paul Groth. Knowledge Engineering Using Large Language Models. In Special Issue on Trends in Graph Data and Knowledge. Transactions on Graph Data and Knowledge (TGDK), Volume 1, Issue 1, pp. 3:1-3:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@Article{allen_et_al:TGDK.1.1.3,
  author =	{Allen, Bradley P. and Stork, Lise and Groth, Paul},
  title =	{{Knowledge Engineering Using Large Language Models}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:19},
  ISSN =	{2942-7517},
  year =	{2023},
  volume =	{1},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.1.1.3},
  URN =		{urn:nbn:de:0030-drops-194777},
  doi =		{10.4230/TGDK.1.1.3},
  annote =	{Keywords: knowledge engineering, large language models}
}
Document
DOI: 10.4230/DagMan.9.1.1
Web Futures: Inclusive, Intelligent, Sustainable The 2020 Manifesto for Web Science (Dagstuhl Perspectives Workshop 18262)

Authors: Bettina Berendt, Fabien Gandon, Susan Halford, Wendy Hall, Jim Hendler, Katharina E. Kinder-Kurlanda, Eirini Ntoutsi, and Steffen Staab

Published in: Dagstuhl Manifestos, Volume 9, Issue 1 (2021)

Abstract
This Manifesto was produced from the Perspectives Workshop 18262 entitled "10 Years of Web Science" that took place at Schloss Dagstuhl from June 24 – 29, 2018. At the Workshop, we revisited the origins of Web Science, explored the challenges and opportunities of the Web, and looked ahead to potential futures for both the Web and Web Science. We explain issues that society faces in the Web by the ambivalences that are inherent in the Web. All the enormous benefits that the Web offers - for information sharing, collective organization and distributed activity, social inclusion and economic growth - will always carry along negative consequences, too, and 30 years after its creation negative consequences of the Web are only too apparent. The Web continues to evolve and its next major step will involve Artificial Intelligence (AI) at large. AI has the potential to amplify positive and negative outcomes, and we explore these possibilities, situating them within the wider debate about the future of regulation and governance for the Web. Finally, we outline the need to extend Web Science as the science that is devoted to the analysis and engineering of the Web, to strengthen our role in shaping the future of the Web and present five key directions for capacity building that are necessary to achieve this: (i), supporting interdisciplinarity, (ii), supporting collaboration, (iii), supporting the sustainable Web, (iv), supporting the Intelligent Web, and (v), supporting the Inclusive Web. Our writing reflects our background in several disciplines of the social and technical sciences and that these disciplines emphasize topics to various extents. We are acutely aware that our observations occupy a particular point in time and are skewed towards our experience as Western scholars - a limitation that Web Science will need to overcome.
Cite as

Bettina Berendt, Fabien Gandon, Susan Halford, Wendy Hall, Jim Hendler, Katharina E. Kinder-Kurlanda, Eirini Ntoutsi, and Steffen Staab. Web Futures: Inclusive, Intelligent, Sustainable The 2020 Manifesto for Web Science (Dagstuhl Perspectives Workshop 18262). In Dagstuhl Manifestos, Volume 9, Issue 1, pp. 1-42, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@Article{berendt_et_al:DagMan.9.1.1,
  author =	{Berendt, Bettina and Gandon, Fabien and Halford, Susan and Hall, Wendy and Hendler, Jim and Kinder-Kurlanda, Katharina E. and Ntoutsi, Eirini and Staab, Steffen},
  title =	{{Web Futures: Inclusive, Intelligent, Sustainable The 2020 Manifesto for Web Science (Dagstuhl Perspectives Workshop 18262)}},
  pages =	{1--42},
  journal =	{Dagstuhl Manifestos},
  ISSN =	{2193-2433},
  year =	{2021},
  volume =	{9},
  number =	{1},
  editor =	{Berendt, Bettina and Gandon, Fabien and Halford, Susan and Hall, Wendy and Hendler, Jim and Kinder-Kurlanda, Katharina E. and Ntoutsi, Eirini and Staab, Steffen},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagMan.9.1.1},
  URN =		{urn:nbn:de:0030-drops-137443},
  doi =		{10.4230/DagMan.9.1.1},
  annote =	{Keywords: Web Science, Artificial Intelligence, Web Governance, Capacity Building}
}
Document
DOI: 10.4230/DFU.Vol4.12111.191
The Uses of Norms

Authors: Munindar P. Singh, Matthew Arrott, Tina Balke, Amit K. Chopra, Rob Christiaanse, Stephen Cranefield, Frank Dignum, Davide Eynard, Emilia Farcas, Nicoletta Fornara, Fabien Gandon, Guido Governatori, Hoa Khanh Dam, Joris Hulstijn, Ingolf Krueger, Ho-Pun Lam, Michael Meisinger, Pablo Noriega, Bastin Tony Roy Savarimuthu, Kartik Tadanki, Harko Verhagen, and Serena Villata

Published in: Dagstuhl Follow-Ups, Volume 4, Normative Multi-Agent Systems (2013)

Abstract
This chapter presents a variety of applications of norms. These applications include governance in sociotechnical systems, data licensing and data collection, understanding software development teams, requirements engineering, assurance, natural resource allocation, wireless grids, autonomous vehicles, serious games, and virtual worlds.
Cite as

Munindar P. Singh, Matthew Arrott, Tina Balke, Amit K. Chopra, Rob Christiaanse, Stephen Cranefield, Frank Dignum, Davide Eynard, Emilia Farcas, Nicoletta Fornara, Fabien Gandon, Guido Governatori, Hoa Khanh Dam, Joris Hulstijn, Ingolf Krueger, Ho-Pun Lam, Michael Meisinger, Pablo Noriega, Bastin Tony Roy Savarimuthu, Kartik Tadanki, Harko Verhagen, and Serena Villata. The Uses of Norms. In Normative Multi-Agent Systems. Dagstuhl Follow-Ups, Volume 4, pp. 191-229, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)

Copy BibTex To Clipboard

@InCollection{singh_et_al:DFU.Vol4.12111.191,
  author =	{Singh, Munindar P. and Arrott, Matthew and Balke, Tina and Chopra, Amit K. and Christiaanse, Rob and Cranefield, Stephen and Dignum, Frank and Eynard, Davide and Farcas, Emilia and Fornara, Nicoletta and Gandon, Fabien and Governatori, Guido and Khanh Dam, Hoa and Hulstijn, Joris and Krueger, Ingolf and Lam, Ho-Pun and Meisinger, Michael and Noriega, Pablo and Savarimuthu, Bastin Tony Roy and Tadanki, Kartik and Verhagen, Harko and Villata, Serena},
  title =	{{The Uses of Norms}},
  booktitle =	{Normative Multi-Agent Systems},
  pages =	{191--229},
  series =	{Dagstuhl Follow-Ups},
  ISBN =	{978-3-939897-51-4},
  ISSN =	{1868-8977},
  year =	{2013},
  volume =	{4},
  editor =	{Andrighetto, Giulia and Governatori, Guido and Noriega, Pablo and van der Torre, Leendert W. N.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DFU.Vol4.12111.191},
  URN =		{urn:nbn:de:0030-drops-40047},
  doi =		{10.4230/DFU.Vol4.12111.191},
  annote =	{Keywords: Norms, MAS, Governance, Requirements engineering}
}
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