77 Search Results for "Johnson, Matthew"

Document
DOI: 10.4230/LIPIcs.STACS.2026.73
Colouring Probe H-Free Graphs

Authors: Daniël Paulusma, Johannes Rauch, and Erik Jan van Leeuwen

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
The NP-complete problems Colouring and k-Colouring (k ≥ 3) are well studied on H-free graphs, i.e., graphs that do not contain some fixed graph H as an induced subgraph. We research to what extent the known polynomial-time algorithms for H-free graphs can be generalized if we only know some of the edges of the input graph. We do this by considering the classical probe graph model introduced in the early nineties. For a graph H, a partitioned probe H-free graph (G,P,N) consists of a graph G = (V,E), together with a set P ⊆ V of probes and an independent set N = V ⧵ P of non-probes, such that G+F is H-free for some edge set F ⊆ binom(N,2). We show the following: - We fully classify Colouring on partitioned probe H-free graphs and show that the obtained complexity dichotomy differs from the known dichotomy of Colouring for H-free graphs. - We fully classify 3-Colouring on partitioned probe P_t-free graphs: we prove polynomial-time solvability for t ≤ 5 and NP-completeness for t ≥ 6. In contrast, 3-Colouring on P_t-free graphs is known to be polynomial-time solvable for t ≤ 7 and quasi-polynomial-time solvable for t ≥ 8. Our main result is our polynomial-time algorithm for 3-Colouring on partitioned P₅-free graphs. For this result, and also for all our other polynomial-time results, we do not need to know the edge set F; we only need to know its existence. Moreover, the class of probe P₅-free graphs includes not only paths of arbitrary length but even all bipartite graphs and is much richer than the class of P₅-free graphs. The latter is also evidenced by the fact that there exist graph problems, such as Matching Cut, that are known to be polynomial-time solvable for P₅-free graphs but NP-complete for partitioned probe P₅-free graphs. In particular, unlike the class of 3-colourable P₅-free graphs, the class of 3-colourable probe P₅-free graphs has unbounded mim-width. Hence, our polynomial-time result for 3-Colouring for probe P₅-free graphs suggests that there may be another, deeper overarching reason why 3-Colouring is polynomial-time solvable for P₅-free graphs.
Cite as

Daniël Paulusma, Johannes Rauch, and Erik Jan van Leeuwen. Colouring Probe H-Free Graphs. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 73:1-73:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{paulusma_et_al:LIPIcs.STACS.2026.73,
  author =	{Paulusma, Dani\"{e}l and Rauch, Johannes and van Leeuwen, Erik Jan},
  title =	{{Colouring Probe H-Free Graphs}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{73:1--73:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.73},
  URN =		{urn:nbn:de:0030-drops-255621},
  doi =		{10.4230/LIPIcs.STACS.2026.73},
  annote =	{Keywords: colouring, probe graph, forbidden induced subgraph, complexity dichotomy}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.1
Triangle Detection in H-Free Graphs

Authors: Amir Abboud, Ron Safier, and Nathan Wallheimer

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We initiate the study of combinatorial algorithms for Triangle Detection in H-free graphs. The goal is to decide if a graph that forbids a fixed pattern H as a subgraph contains a triangle, using only "combinatorial" methods that notably exclude fast matrix multiplication. Our work aims to classify which patterns admit a subcubic speedup, working towards a dichotomy theorem. On the lower bound side, we show that if H is not 3-colorable or contains more than one triangle, the complexity of the problem remains unchanged, and no combinatorial speedup is likely possible. On the upper bound side, we develop an embedding approach that results in a strongly subcubic, combinatorial algorithm for a rich class of "embeddable" patterns. Specifically, for an embeddable pattern of size k, our algorithm runs in Õ(n^{3-1/(2^{k-3)}}) time, where Õ(⋅) hides poly-logarithmic factors. This algorithm also extends to listing all the triangles within the same time bound. We supplement this main result with two generalizations: - A generalization to patterns that are embeddable up to a single obstacle that arises from a triangle in the pattern. This completes our classification for small patterns, yielding a dichotomy theorem for all patterns of size up to eight. - An H-sensitive algorithm for embeddable patterns, which runs faster when the number of copies of H is significantly smaller than the maximum possible Ω(n^{k}). Finally, we focus on the special case of odd cycles. We present specialized Triangle Detection algorithms that are very efficient: - A combinatorial algorithm for C_{2k+1}-free graphs that runs in Õ(m+n^{1+2/k}) time for every k ≥ 2, where m is the number of edges in the graph. - A combinatorial C₅-sensitive algorithm that runs in Õ(n² + n^{4/3} t^{1/3}) time, where t is the number of 5-cycles in the graph.
Cite as

Amir Abboud, Ron Safier, and Nathan Wallheimer. Triangle Detection in H-Free Graphs. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 1:1-1:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{abboud_et_al:LIPIcs.ITCS.2026.1,
  author =	{Abboud, Amir and Safier, Ron and Wallheimer, Nathan},
  title =	{{Triangle Detection in H-Free Graphs}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{1:1--1:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.1},
  URN =		{urn:nbn:de:0030-drops-252885},
  doi =		{10.4230/LIPIcs.ITCS.2026.1},
  annote =	{Keywords: fine-grained complexity, triangle detection, H-free graphs}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2025.4
On the Complexity of Secluded Path Problems

Authors: Tesshu Hanaka and Daisuke Tsuru

Published in: LIPIcs, Volume 358, 20th International Symposium on Parameterized and Exact Computation (IPEC 2025)

Abstract
This paper investigates the complexity of finding secluded paths in graphs. We focus on the Short Secluded Path problem and a natural new variant we introduce, Shortest Secluded Path. Formally, given an undirected graph G = (V, E), two vertices s,t ∈ V, and two integers k,l, the Short Secluded Path problem asks whether there exists an s-t path of length at most k with at most l neighbors. This problem is known to be computationally hard: it is W[1]-hard when parameterized by the path length k or by cliquewidth, and para-NP-complete when parameterized by the number l of neighbors. The fixed-parameter tractability is known for k+l or treewidth. In this paper, we expand the parameterized complexity landscape by designing (1) an XP algorithm parameterized by cliquewidth and (2) fixed-parameter algorithms parameterized by neighborhood diversity and twin cover number, respectively. As a byproduct, our results also provide parameterized algorithms for the classic s-t k-Path problem. Furthermore, we introduce the Shortest Secluded Path problem, which seeks a shortest s-t path with the minimum number of neighbors. In contrast to the hardness of the original problem, we reveal that this variant is solvable in polynomial time on unweighted graphs. We complete this by showing that for edge-weighted graphs, the problem becomes W[1]-hard yet remains in XP when parameterized by the shortest path distance between s and t.
Cite as

Tesshu Hanaka and Daisuke Tsuru. On the Complexity of Secluded Path Problems. In 20th International Symposium on Parameterized and Exact Computation (IPEC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 358, pp. 4:1-4:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hanaka_et_al:LIPIcs.IPEC.2025.4,
  author =	{Hanaka, Tesshu and Tsuru, Daisuke},
  title =	{{On the Complexity of Secluded Path Problems}},
  booktitle =	{20th International Symposium on Parameterized and Exact Computation (IPEC 2025)},
  pages =	{4:1--4:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-407-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{358},
  editor =	{Agrawal, Akanksha and van Leeuwen, Erik Jan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2025.4},
  URN =		{urn:nbn:de:0030-drops-251361},
  doi =		{10.4230/LIPIcs.IPEC.2025.4},
  annote =	{Keywords: Secluded path, Parameterized complexity, Polynomial-time algorithm}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.31
Token Sliding Independent Set Reconfiguration on Block Graphs

Authors: Mathew C. Francis and Veena Prabhakaran

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
Let S be an independent set of a simple undirected graph G. Suppose that each vertex of S has a token placed on it. The tokens are allowed to be moved, one at a time, by sliding along the edges of G while maintaining the property that after each move, the vertices having tokens always form an independent set of G. We would like to determine whether the tokens can be eventually brought to stay on the vertices of another independent set S' of G in this manner. In other words, we would like to decide if we can transform S into S' through a sequence of steps, each of which involves substituting a vertex in the current independent set with one of its neighbours to obtain another independent set. This problem of determining if one independent set of a graph "is reachable" from another independent set of it is known to be PSPACE-hard even for split graphs, planar graphs, and graphs of bounded treewidth. Polynomial time algorithms have been obtained for certain graph classes like trees, interval graphs, claw-free graphs, and bipartite permutation graphs. We present a polynomial time algorithm for the problem on block graphs, which are the graphs in which every maximal 2-connected subgraph is a clique. Our algorithm is the first generalization of the known polynomial time algorithm for trees to a larger class of graphs.
Cite as

Mathew C. Francis and Veena Prabhakaran. Token Sliding Independent Set Reconfiguration on Block Graphs. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 31:1-31:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{francis_et_al:LIPIcs.FSTTCS.2025.31,
  author =	{Francis, Mathew C. and Prabhakaran, Veena},
  title =	{{Token Sliding Independent Set Reconfiguration on Block Graphs}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{31:1--31:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.31},
  URN =		{urn:nbn:de:0030-drops-251120},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.31},
  annote =	{Keywords: Token sliding independent set reconfiguration, block graphs, polynomial time algorithm}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.7
Polynomial Equivalence of Extended Chemical Reaction Models

Authors: Divya Bajaj, Jose-Luis Castellanos, Ryan Knobel, Austin Luchsinger, Aiden Massie, Adrian Salinas, Pablo Santos, Ramiro Santos, Robert Schweller, and Tim Wylie

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
The ability to detect whether a species (or dimension) is zero in Chemical Reaction Networks (CRN), Vector Addition Systems, or Petri Nets is known to increase the power of these models - making them capable of universal computation. While this ability may appear in many forms, such as extending the models to allow transitions to be inhibited, prioritized, or synchronized, we present an extension that directly performs this zero checking. We introduce a new void genesis CRN variant with a simple design that merely increments the count of a specific species when any other species' count goes to zero. As with previous extensions, we show that the model is Turing Universal. We then analyze several other studied CRN variants and show that they are all equivalent through a polynomial simulation with the void genesis model, which does not merely follow from Turing-universality. Thus, inhibitor species, reactions that occur at different rates, being allowed to run reactions in parallel, or even being allowed to continually add more volume to the CRN, does not add additional simulation power beyond simply detecting if a species count becomes zero.
Cite as

Divya Bajaj, Jose-Luis Castellanos, Ryan Knobel, Austin Luchsinger, Aiden Massie, Adrian Salinas, Pablo Santos, Ramiro Santos, Robert Schweller, and Tim Wylie. Polynomial Equivalence of Extended Chemical Reaction Models. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 7:1-7:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bajaj_et_al:LIPIcs.ISAAC.2025.7,
  author =	{Bajaj, Divya and Castellanos, Jose-Luis and Knobel, Ryan and Luchsinger, Austin and Massie, Aiden and Salinas, Adrian and Santos, Pablo and Santos, Ramiro and Schweller, Robert and Wylie, Tim},
  title =	{{Polynomial Equivalence of Extended Chemical Reaction Models}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{7:1--7:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.7},
  URN =		{urn:nbn:de:0030-drops-249158},
  doi =		{10.4230/LIPIcs.ISAAC.2025.7},
  annote =	{Keywords: Chemical Reaction Networks, Simulations, Petri-nets, Vector Addition Systems, Bi-simulation, Turing-universality, Inhibitors}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.33
Coloring Reconfiguration Under Color Swapping

Authors: Janosch Fuchs, Rin Saito, Tatsuhiro Suga, Takahiro Suzuki, and Yuma Tamura

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
In the Coloring Reconfiguration problem, we are given two proper k-colorings of a graph and asked to decide whether one can be transformed into the other by repeatedly applying a specified recoloring rule, while maintaining a proper coloring throughout. For this problem, two recoloring rules have been widely studied: single-vertex recoloring and Kempe chain recoloring. In this paper, we introduce a new rule, called color swapping, where two adjacent vertices may exchange their colors, so that the resulting coloring remains proper, and study the computational complexity of the problem under this rule. We first establish a complexity dichotomy with respect to k: the problem is solvable in polynomial time for k ≤ 2, and is PSPACE-complete for k ≥ 3. We further show that the problem remains PSPACE-complete even on restricted graph classes, including bipartite graphs, split graphs, and planar graphs of bounded degree. In contrast, we present polynomial-time algorithms for several graph classes: for paths when k = 3, for split graphs when k is fixed, and for cographs when k is arbitrary.
Cite as

Janosch Fuchs, Rin Saito, Tatsuhiro Suga, Takahiro Suzuki, and Yuma Tamura. Coloring Reconfiguration Under Color Swapping. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 33:1-33:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fuchs_et_al:LIPIcs.ISAAC.2025.33,
  author =	{Fuchs, Janosch and Saito, Rin and Suga, Tatsuhiro and Suzuki, Takahiro and Tamura, Yuma},
  title =	{{Coloring Reconfiguration Under Color Swapping}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{33:1--33:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.33},
  URN =		{urn:nbn:de:0030-drops-249411},
  doi =		{10.4230/LIPIcs.ISAAC.2025.33},
  annote =	{Keywords: Combinatorial reconfiguration, graph coloring, PSPACE-complete, graph algorithm}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.53
A Parameterized Study of Secluded Structures in Directed Graphs

Authors: Jonas Schmidt, Shaily Verma, and Nadym Mallek

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
Given an undirected graph G and an integer k, the Secluded Π-Subgraph problem asks you to find a maximum size induced subgraph that satisfies a property Π and has at most k neighbors in the rest of the graph. This problem has been extensively studied; however, there is no prior study of the problem in directed graphs. This question has been mentioned by Jansen et al. [ISAAC'23]. In this paper, we initiate the study of Secluded Subgraph problems in directed graphs by incorporating different notions of neighborhoods: in-neighborhood, out-neighborhood, and their union. Formally, we call these problems {In, Out, Total}-Secluded Π-Subgraph, where given a directed graph G and an integer k, we want to find an induced subgraph satisfying Π of maximum size that has at most k in/out/total-neighbors in the rest of the graph, respectively. We investigate the parameterized complexity of these problems for different properties Π. In particular, we prove the following parameterized results: - We design an FPT algorithm for the Total-Secluded Strongly Connected Subgraph problem when parameterized by k. - We show that the Out-Secluded ℱ-Free Subgraph problem with parameter k is W[1]-hard, where ℱ is a family of directed graphs except any subgraph of a star graph whose edges are directed towards the center. This result also implies that In/Out-Secluded DAG is W[1]-hard, unlike the undirected variants of the two problems, which are FPT. - We design an FPT-algorithm for In/Out/Total-Secluded α-Bounded Subgraph when parameterized by k, where α-bounded graphs are a superclass of tournaments. - For undirected graphs, we improve the best-known FPT algorithm for Secluded Clique by providing a faster FPT algorithm that runs in time 1.6181^k n^𝒪(1).
Cite as

Jonas Schmidt, Shaily Verma, and Nadym Mallek. A Parameterized Study of Secluded Structures in Directed Graphs. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 53:1-53:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{schmidt_et_al:LIPIcs.ISAAC.2025.53,
  author =	{Schmidt, Jonas and Verma, Shaily and Mallek, Nadym},
  title =	{{A Parameterized Study of Secluded Structures in Directed Graphs}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{53:1--53:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.53},
  URN =		{urn:nbn:de:0030-drops-249616},
  doi =		{10.4230/LIPIcs.ISAAC.2025.53},
  annote =	{Keywords: Secluded Subgraph, Parametrized Complexity, Directed Graphs, Strong Connectivity}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.29
Stabbing Faces by a Convex Curve

Authors: David Eppstein

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
We prove that, for every plane graph G and every smooth convex curve C not on a single line, there exists a straight-line drawing of G for which every face is crossed by C.
Cite as

David Eppstein. Stabbing Faces by a Convex Curve. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 29:1-29:8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{eppstein:LIPIcs.GD.2025.29,
  author =	{Eppstein, David},
  title =	{{Stabbing Faces by a Convex Curve}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{29:1--29:8},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.29},
  URN =		{urn:nbn:de:0030-drops-250155},
  doi =		{10.4230/LIPIcs.GD.2025.29},
  annote =	{Keywords: planar graphs, convex curves, stabbing, transversal}
}
Document
DOI: 10.4230/OASIcs.DX.2025.7
One-Shot Learning in Hybrid System Identification: A New Modular Paradigm

Authors: Swantje Plambeck, Maximilian Schmidt, Louise Travé-Massuyès, and Goerschwin Fey

Published in: OASIcs, Volume 136, 36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025)

Abstract
Identification of hybrid systems requires learning models that capture both discrete transitions and continuous dynamics from observational data. Traditional approaches follow a stepwise process, separating trace segmentation and mode-specific regression, which often leads to inconsistencies due to unmodeled interdependencies. In this paper, we propose a new iterative learning paradigm that jointly optimizes segmentation and flow function identification. The method incrementally constructs a hybrid model by evaluating and expanding candidate flow functions over observed traces, introducing new modes only when existing ones fail to explain the data. The approach is modular and agnostic to the choice of the regression technique, allowing the identification of hybrid systems with varying levels of complexity. Empirical results on benchmark examples demonstrate that the proposed method produces more compact models compared to traditional techniques, while supporting flexible integration of different regression methods. By favoring fewer, more generalizable modes, the resulting models are not only likely to reduce complexity but also simplify diagnostic reasoning, improve fault isolation, and enhance robustness by avoiding overfitting to spurious mode changes.
Cite as

Swantje Plambeck, Maximilian Schmidt, Louise Travé-Massuyès, and Goerschwin Fey. One-Shot Learning in Hybrid System Identification: A New Modular Paradigm. In 36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025). Open Access Series in Informatics (OASIcs), Volume 136, pp. 7:1-7:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{plambeck_et_al:OASIcs.DX.2025.7,
  author =	{Plambeck, Swantje and Schmidt, Maximilian and Trav\'{e}-Massuy\`{e}s, Louise and Fey, Goerschwin},
  title =	{{One-Shot Learning in Hybrid System Identification: A New Modular Paradigm}},
  booktitle =	{36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025)},
  pages =	{7:1--7:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-394-2},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{136},
  editor =	{Quinones-Grueiro, Marcos and Biswas, Gautam and Pill, Ingo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.DX.2025.7},
  URN =		{urn:nbn:de:0030-drops-247969},
  doi =		{10.4230/OASIcs.DX.2025.7},
  annote =	{Keywords: Hybrid System, Model Learning, Symbolic Regression}
}
Document
DOI: 10.4230/LIPIcs.TIME.2025.13
Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials

Authors: Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, and Guo-Qiang Zhang

Published in: LIPIcs, Volume 355, 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)

Abstract
Clinical trials are typically specified with protocols that define eligibility criteria, treatment regimens, follow-up schedules, and outcome assessments. Temporality is a hallmark of all clinical trials, reflected within and across trial components, with complex dependencies unfolding across multiple time points. Despite their importance, clinical trial protocols are described in free-text format, limiting their semantic precision and the ability to support automated reasoning, leverage data across studies and sites, or simulate trial execution under varying assumptions using Real-World Data. This paper introduces a formalized representation of clinical trials using Temporal Ensemble Logic (TEL). TEL incorporates metricized modal operators, such as "always until t" (□_t) and "possibly until t" (◇_t), where t is a time-length parameter, to offer a logical framework for capturing phenotypes in biomedicine. TEL is more expressive in syntax than classical linear temporal logic (LTL) while maintaining the simplicity of semantic structures. The attributes of TEL are exploited in this paper to formally represent not only individual clinical trial components, but also the timing and sequential dependencies of these components as a whole. Modeling strategies and demonstration case studies are provided to show that TEL can represent the entirety of clinical trials, whereby providing a formal logical framework that can be used to represent the intricate temporal dependencies in trial structure specification. Since clinical trials are a cornerstone of evidence-based medicine, serving as the scientific basis for evaluating the safety, efficacy, and comparative effectiveness of therapeutic interventions, results reported here can serve as a stepping stone that leads to scalable, consistent, and reproducible representation and simulation of clinical trials across all disease domains.
Cite as

Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, and Guo-Qiang Zhang. Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. In 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 355, pp. 13:1-13:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{li_et_al:LIPIcs.TIME.2025.13,
  author =	{Li, Xiaojin and Huang, Yan and Abeysinghe, Rashmie and Sun, Zenan and Chen, Hongyu and Li, Pengze and He, Xing and Tao, Shiqiang and Tao, Cui and Bian, Jiang and Cui, Licong and Zhang, Guo-Qiang},
  title =	{{Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials}},
  booktitle =	{32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)},
  pages =	{13:1--13:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-401-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{355},
  editor =	{Vidal, Thierry and Wa{\l}\k{e}ga, Przemys{\l}aw Andrzej},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TIME.2025.13},
  URN =		{urn:nbn:de:0030-drops-244595},
  doi =		{10.4230/LIPIcs.TIME.2025.13},
  annote =	{Keywords: Temporal ensemble logic, Clinical trials, Logic-based modeling}
}
Document
DOI: 10.4230/LIPIcs.AFT.2025.21
Pool Formation in Oceanic Games: Shapley Value and Proportional Sharing

Authors: Aggelos Kiayias, Elias Koutsoupias, Evangelos Markakis, and Panagiotis Tsamopoulos

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)

Abstract
We study a game-theoretic model for pool formation in Proof of Stake blockchain protocols. In such systems, stakeholders can form pools as a means of obtaining regular rewards from participation in ledger maintenance, with the power of each pool being dependent on its collective stake. The question we are interested in is the design of mechanisms, i.e., "reward sharing schemes," that suitably split rewards among pool members and achieve favorable properties in the resulting pool configuration. With this in mind, we initiate a non-cooperative game-theoretic analysis of the well known Shapley value scheme from cooperative game theory into the context of blockchains. In particular, we focus on the oceanic model of games, proposed by Milnor and Shapley (1978), which is suitable for populations where a small set of large players coexists with a big mass of rather small, negligible players. This provides an appropriate level of abstraction for pool formation processes that occur among the stakeholders of a blockchain. We provide comparisons between the Shapley mechanism and the more standard proportional scheme, in terms of attained decentralization, via a Price of Stability analysis and in terms of susceptibility to Sybil attacks, i.e., the strategic splitting of a players' stake with the intention of participating in multiple pools for increased profit. Interestingly, while the widely deployed proportional scheme appears to have certain advantages, the Shapley value scheme, which rewards higher the most pivotal players, emerges as a competitive alternative, by being able to bypass some of the downsides of proportional sharing in terms of Sybil attack susceptibility, while also not being far from optimal guarantees w.r.t. decentralization. Finally, we also complement our study with some variations of proportional sharing, where the profit is split in proportion to a superadditive or a subadditive function of the stake, showing that our results for the Shapley value scheme are maintained in comparison to these functions as well.
Cite as

Aggelos Kiayias, Elias Koutsoupias, Evangelos Markakis, and Panagiotis Tsamopoulos. Pool Formation in Oceanic Games: Shapley Value and Proportional Sharing. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 21:1-21:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kiayias_et_al:LIPIcs.AFT.2025.21,
  author =	{Kiayias, Aggelos and Koutsoupias, Elias and Markakis, Evangelos and Tsamopoulos, Panagiotis},
  title =	{{Pool Formation in Oceanic Games: Shapley Value and Proportional Sharing}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{21:1--21:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.21},
  URN =		{urn:nbn:de:0030-drops-247409},
  doi =		{10.4230/LIPIcs.AFT.2025.21},
  annote =	{Keywords: Shapley value, Nash equilibria, Price of Stability, Reward sharing schemes, Proof of Stake blockchains}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.7
Graph Modification of Bounded Size to Minor-Closed Classes as Fast as Vertex Deletion

Authors: Laure Morelle, Ignasi Sau, and Dimitrios M. Thilikos

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A replacement action is a function ℒ that maps each graph H to a collection of graphs of size at most |V(H)|. Given a graph class ℋ, we consider a general family of graph modification problems, called ℒ-Replacement to ℋ, where the input is a graph G and the question is whether it is possible to replace some induced subgraph H₁ of G on at most k vertices by a graph H₂ in ℒ(H₁) so that the resulting graph belongs to ℋ. ℒ-Replacement to ℋ can simulate many graph modification problems including vertex deletion, edge deletion/addition/edition/contraction, vertex identification, subgraph complementation, independent set deletion, (induced) matching deletion/contraction, etc. We present two algorithms. The first one solves ℒ-Replacement to ℋ in time 2^poly(k) ⋅ |V(G)|² for every minor-closed graph class ℋ, where poly is a polynomial whose degree depends on ℋ, under a mild technical condition on ℒ. This generalizes the results of Morelle, Sau, Stamoulis, and Thilikos [ICALP 2020, ICALP 2023] for the particular case of Vertex Deletion to ℋ within the same running time. Our second algorithm is an improvement of the first one when ℋ is the class of graphs embeddable in a surface of Euler genus at most g and runs in time 2^𝒪(k⁹) ⋅ |V(G)|², where the 𝒪(⋅) notation depends on g. To the best of our knowledge, these are the first parameterized algorithms with a reasonable parametric dependence for such a general family of graph modification problems to minor-closed classes.
Cite as

Laure Morelle, Ignasi Sau, and Dimitrios M. Thilikos. Graph Modification of Bounded Size to Minor-Closed Classes as Fast as Vertex Deletion. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 7:1-7:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{morelle_et_al:LIPIcs.ESA.2025.7,
  author =	{Morelle, Laure and Sau, Ignasi and Thilikos, Dimitrios M.},
  title =	{{Graph Modification of Bounded Size to Minor-Closed Classes as Fast as Vertex Deletion}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{7:1--7:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.7},
  URN =		{urn:nbn:de:0030-drops-244751},
  doi =		{10.4230/LIPIcs.ESA.2025.7},
  annote =	{Keywords: Graph modification problems, Parameterized complexity, Graph minors, Flat Wall theorem, Irrelevant vertex technique, Algorithmic meta-theorem, Parametric dependence, Dynamic programming}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.29
The Tape Reconfiguration Problem and Its Consequences for Dominating Set Reconfiguration

Authors: Nicolas Bousquet, Quentin Deschamps, Arnaud Mary, Amer E. Mouawad, and Théo Pierron

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A dominating set of a graph G = (V,E) is a set of vertices D ⊆ V whose closed neighborhood is V, i.e., N[D] = V. We view a dominating set as a collection of tokens placed on the vertices of D. In the token sliding variant of the Dominating Set Reconfiguration problem (TS-DSR), we seek to transform a source dominating set into a target dominating set in G by sliding tokens along edges, and while maintaining a dominating set all along the transformation. TS-DSR is known to be PSPACE-complete even restricted to graphs of pathwidth w, for some non-explicit constant w and to be XL-complete parameterized by the size k of the solution. The first contribution of this article consists in using a novel approach to provide the first explicit constant for which the TS-DSR problem is PSPACE-complete, a question that was left open in the literature. From a parameterized complexity perspective, the token jumping variant of DSR, i.e., where tokens can jump to arbitrary vertices, is known to be FPT when parameterized by the size of the dominating sets on nowhere dense classes of graphs. But, in contrast, no non-trivial result was known about TS-DSR. We prove that DSR is actually much harder in the sliding model since it is XL-complete when restricted to bounded pathwidth graphs and even when parameterized by k plus the feedback vertex set number of the graph. This gives, for the first time, a difference of behavior between the complexity under token sliding and token jumping for some problem on graphs of bounded treewidth. All our results are obtained using a brand new method, based on the hardness of the so-called Tape Reconfiguration problem, a problem we believe to be of independent interest. We complement these hardness results with a positive result showing that DSR (parameterized by k) in the sliding model is FPT on planar graphs, also answering an open problem from the literature.
Cite as

Nicolas Bousquet, Quentin Deschamps, Arnaud Mary, Amer E. Mouawad, and Théo Pierron. The Tape Reconfiguration Problem and Its Consequences for Dominating Set Reconfiguration. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 29:1-29:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bousquet_et_al:LIPIcs.ESA.2025.29,
  author =	{Bousquet, Nicolas and Deschamps, Quentin and Mary, Arnaud and Mouawad, Amer E. and Pierron, Th\'{e}o},
  title =	{{The Tape Reconfiguration Problem and Its Consequences for Dominating Set Reconfiguration}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{29:1--29:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.29},
  URN =		{urn:nbn:de:0030-drops-244974},
  doi =		{10.4230/LIPIcs.ESA.2025.29},
  annote =	{Keywords: combinatorial reconfiguration, parameterized complexity, structural graph parameters, treewidth, dominating set}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.31
An Optimal Algorithm for Shortest Paths in Unweighted Disk Graphs

Authors: Bruce W. Brewer and Haitao Wang

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Given in the plane a set S of n points and a set of disks centered at these points, the disk graph G(S) induced by these disks has vertex set S and an edge between two vertices if their disks intersect. Note that the disks may have different radii. We consider the problem of computing shortest paths from a source point s ∈ S to all vertices in G(S) where the length of a path in G(S) is defined as the number of edges in the path. The previously best algorithm solves the problem in O(nlog² n) time. A lower bound of Ω(nlog n) is also known for this problem under the algebraic decision tree model. In this paper, we present an O(nlog n) time algorithm, which matches the lower bound and thus is optimal. Another virtue of our algorithm is that it is quite simple.
Cite as

Bruce W. Brewer and Haitao Wang. An Optimal Algorithm for Shortest Paths in Unweighted Disk Graphs. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 31:1-31:8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{brewer_et_al:LIPIcs.ESA.2025.31,
  author =	{Brewer, Bruce W. and Wang, Haitao},
  title =	{{An Optimal Algorithm for Shortest Paths in Unweighted Disk Graphs}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{31:1--31:8},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.31},
  URN =		{urn:nbn:de:0030-drops-244997},
  doi =		{10.4230/LIPIcs.ESA.2025.31},
  annote =	{Keywords: disk graphs, weighted Voronoi diagrams, shortest paths}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.12
Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better

Authors: Jacobus Conradi and Anne Driemel

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Many application areas collect unstructured trajectory data. In subtrajectory clustering, one is interested to find patterns in this data using a hybrid combination of segmentation and clustering. We analyze two variants of this problem based on the well-known SetCover and CoverageMaximization problems. In both variants the set system is induced by metric balls under the Fréchet distance centered at polygonal curves. Our algorithms focus on improving the running time of the update step of the generic greedy algorithm by means of a careful combination of sweeps through a candidate space. In the first variant, we are given a polygonal curve P of complexity n, distance threshold Δ and complexity bound 𝓁 and the goal is to identify a minimum-size set of center curves 𝒞, where each center curve is of complexity at most 𝓁 and every point p on P is covered. A point p on P is covered if it is part of a subtrajectory π_p of P such that there is a center c ∈ 𝒞 whose Fréchet distance to π_p is at most Δ. We present an approximation algorithm for this problem with a running time of 𝒪((n²𝓁 + √{k_Δ}n^{5/2})log²n), where k_Δ is the size of an optimal solution. The algorithm gives a bicriterial approximation guarantee that relaxes the Fréchet distance threshold by a constant factor and the size of the solution by a factor of 𝒪(log n). The second problem variant asks for the maximum fraction of the input curve P that can be covered using k center curves, where k ≤ n is a parameter to the algorithm. For the second problem variant, our techniques lead to an algorithm with a running time of 𝒪((k+𝓁)n²log²n) and similar approximation guarantees. Note that in both algorithms k,k_Δ ∈ O(n) and hence the running time is cubic, or better if k ≪ n.
Cite as

Jacobus Conradi and Anne Driemel. Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 12:1-12:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{conradi_et_al:LIPIcs.ESA.2025.12,
  author =	{Conradi, Jacobus and Driemel, Anne},
  title =	{{Subtrajectory Clustering and Coverage Maximization in Cubic Time, or Better}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{12:1--12:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.12},
  URN =		{urn:nbn:de:0030-drops-244806},
  doi =		{10.4230/LIPIcs.ESA.2025.12},
  annote =	{Keywords: Clustering, Set cover, Fr\'{e}chet distance, Approximation algorithms}
}
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