20 Search Results for "Johnson, Matthew"

Document
DOI: 10.4230/LIPIcs.SEA.2024.21
SPIDER: Improved Succinct Rank and Select Performance

Authors: Matthew D. Laws, Jocelyn Bliven, Kit Conklin, Elyes Laalai, Samuel McCauley, and Zach S. Sturdevant

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
Rank and select data structures seek to preprocess a bit vector to quickly answer two kinds of queries: Rank(i) gives the number of 1 bits in slots 0 through i, and Select(j) gives the first slot s with Rank(s) = j. A succinct data structure can answer these queries while using space much smaller than the size of the original bit vector. State of the art succinct rank and select data structures use as little as 4% extra space (over the underlying bit vector) while answering rank and select queries very quickly. Rank queries can be answered using only a handful of array accesses. Select queries can be answered by starting with similar array accesses, followed by a linear scan through the bit vector. Nonetheless, a tradeoff remains: data structures that use under 4% space are significantly slower at answering rank and select queries than less-space-efficient data structures (using, say, over 20% extra space). In this paper we make significantly progress towards closing this gap. We give a new data structure, SPIDER, which uses 3.82% extra space. SPIDER gives the best known rank query time for data sets of 8 billion or more bits, even compared to much less space-efficient data structures. For select queries, SPIDER outperforms all data structures that use less than 4% space, and significantly closes the gap in select performance between data structures with less than 4% space, and those that use more (over 20% for both rank and select) space. SPIDER makes two main technical contributions. For rank queries, it improves performance by interleaving the metadata with the bit vector to improve cache efficiency. For select queries, it uses predictions to almost eliminate the cost of the linear scan. These predictions are inspired by recent results on data structures with machine-learned predictions, adapted to the succinct data structure setting. Our results hold on both real and synthetic data, showing that these predictions are effective in practice.
Cite as

Matthew D. Laws, Jocelyn Bliven, Kit Conklin, Elyes Laalai, Samuel McCauley, and Zach S. Sturdevant. SPIDER: Improved Succinct Rank and Select Performance. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 21:1-21:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{laws_et_al:LIPIcs.SEA.2024.21,
  author =	{Laws, Matthew D. and Bliven, Jocelyn and Conklin, Kit and Laalai, Elyes and McCauley, Samuel and Sturdevant, Zach S.},
  title =	{{SPIDER: Improved Succinct Rank and Select Performance}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{21:1--21:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.21},
  URN =		{urn:nbn:de:0030-drops-203865},
  doi =		{10.4230/LIPIcs.SEA.2024.21},
  annote =	{Keywords: Rank and Select, Succinct Data Structures, Data Structres, Cache Performance, Predictions}
}
Document
DOI: 10.4230/LIPIcs.SEA.2024.26
Scalable Hard Instances for Independent Set Reconfiguration

Authors: Takehide Soh, Takumu Watanabe, Jun Kawahara, Akira Suzuki, and Takehiro Ito

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract
The Token Jumping problem, also known as the independent set reconfiguration problem under the token jumping model, is defined as follows: Given a graph and two same-sized independent sets, determine whether one can be transformed into the other via a sequence of independent sets. Token Jumping has been extensively studied, mainly from the viewpoint of algorithmic theory, but its practical study has just begun. To develop a practically good solver, it is important to construct benchmark datasets that are scalable and hard. Here, "scalable" means the ability to change the scale of the instance while maintaining its characteristics by adjusting the given parameters; and "hard" means that the instance can become so difficult that it cannot be solved within a practical time frame by a solver. In this paper, we propose four types of instance series for Token Jumping. Our instance series is scalable in the sense that instance scales are controlled by the number of vertices. To establish their hardness, we focus on the numbers of transformation steps; our instance series requires exponential numbers of steps with respect to the number of vertices. Interestingly, three types of instance series are constructed by importing theories developed by algorithmic research. We experimentally evaluate the scalability and hardness of the proposed instance series, using the SAT solver and award-winning solvers of the international competition for Token Jumping.
Cite as

Takehide Soh, Takumu Watanabe, Jun Kawahara, Akira Suzuki, and Takehiro Ito. Scalable Hard Instances for Independent Set Reconfiguration. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 26:1-26:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{soh_et_al:LIPIcs.SEA.2024.26,
  author =	{Soh, Takehide and Watanabe, Takumu and Kawahara, Jun and Suzuki, Akira and Ito, Takehiro},
  title =	{{Scalable Hard Instances for Independent Set Reconfiguration}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{26:1--26:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.26},
  URN =		{urn:nbn:de:0030-drops-203913},
  doi =		{10.4230/LIPIcs.SEA.2024.26},
  annote =	{Keywords: Combinatorial reconfiguration, Benckmark dataset, Graph Algorithm, PSPACE-complete}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.61
Parameterized Algorithms for Steiner Forest in Bounded Width Graphs

Authors: Andreas Emil Feldmann and Michael Lampis

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
In this paper we reassess the parameterized complexity and approximability of the well-studied Steiner Forest problem in several graph classes of bounded width. The problem takes an edge-weighted graph and pairs of vertices as input, and the aim is to find a minimum cost subgraph in which each given vertex pair lies in the same connected component. It is known that this problem is APX-hard in general, and NP-hard on graphs of treewidth 3, treedepth 4, and feedback vertex set size 2. However, Bateni, Hajiaghayi and Marx [JACM, 2011] gave an approximation scheme with a runtime of n^O(k²/ε) on graphs of treewidth k. Our main result is a much faster efficient parameterized approximation scheme (EPAS) with a runtime of 2^O(k²/ε log k/ε)⋅n^O(1). If k instead is the vertex cover number of the input graph, we show how to compute the optimum solution in 2^O(k log k)⋅n^O(1) time, and we also prove that this runtime dependence on k is asymptotically best possible, under ETH. Furthermore, if k is the size of a feedback edge set, then we obtain a faster 2^O(k)⋅n^O(1) time algorithm, which again cannot be improved under ETH.
Cite as

Andreas Emil Feldmann and Michael Lampis. Parameterized Algorithms for Steiner Forest in Bounded Width Graphs. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 61:1-61:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{feldmann_et_al:LIPIcs.ICALP.2024.61,
  author =	{Feldmann, Andreas Emil and Lampis, Michael},
  title =	{{Parameterized Algorithms for Steiner Forest in Bounded Width Graphs}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{61:1--61:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.61},
  URN =		{urn:nbn:de:0030-drops-202048},
  doi =		{10.4230/LIPIcs.ICALP.2024.61},
  annote =	{Keywords: Steiner Forest, Approximation Algorithms, FPT algorithms}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.99
Constrained Level Planarity Is FPT with Respect to the Vertex Cover Number

Authors: Boris Klemz and Marie Diana Sieper

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
The problem Level Planarity asks for a crossing-free drawing of a graph in the plane such that vertices are placed at prescribed y-coordinates (called levels) and such that every edge is realized as a y-monotone curve. In the variant Constrained Level Planarity, each level y is equipped with a partial order ≺_y on its vertices and in the desired drawing the left-to-right order of vertices on level y has to be a linear extension of ≺_y. Constrained Level Planarity is known to be a remarkably difficult problem: previous results by Klemz and Rote [ACM Trans. Alg.'19] and by Brückner and Rutter [SODA'17] imply that it remains NP-hard even when restricted to graphs whose tree-depth and feedback vertex set number are bounded by a constant and even when the instances are additionally required to be either proper, meaning that each edge spans two consecutive levels, or ordered, meaning that all given partial orders are total orders. In particular, these results rule out the existence of FPT-time (even XP-time) algorithms with respect to these and related graph parameters (unless P=NP). However, the parameterized complexity of Constrained Level Planarity with respect to the vertex cover number of the input graph remained open. In this paper, we show that Constrained Level Planarity can be solved in FPT-time when parameterized by the vertex cover number. In view of the previous intractability statements, our result is best-possible in several regards: a speed-up to polynomial time or a generalization to the aforementioned smaller graph parameters is not possible, even if restricting to proper or ordered instances.
Cite as

Boris Klemz and Marie Diana Sieper. Constrained Level Planarity Is FPT with Respect to the Vertex Cover Number. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 99:1-99:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{klemz_et_al:LIPIcs.ICALP.2024.99,
  author =	{Klemz, Boris and Sieper, Marie Diana},
  title =	{{Constrained Level Planarity Is FPT with Respect to the Vertex Cover Number}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{99:1--99:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.99},
  URN =		{urn:nbn:de:0030-drops-202428},
  doi =		{10.4230/LIPIcs.ICALP.2024.99},
  annote =	{Keywords: Parameterized Complexity, Graph Drawing, Planar Poset Diagram, Level Planarity, Constrained Level Planarity, Vertex Cover, FPT, Computational Geometry}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.102
Lipschitz Continuous Allocations for Optimization Games

Authors: Soh Kumabe and Yuichi Yoshida

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
In cooperative game theory, the primary focus is the equitable allocation of payoffs or costs among agents. However, in the practical applications of cooperative games, accurately representing games is challenging. In such cases, using an allocation method sensitive to small perturbations in the game can lead to various problems, including dissatisfaction among agents and the potential for manipulation by agents seeking to maximize their own benefits. Therefore, the allocation method must be robust against game perturbations. In this study, we explore optimization games, in which the value of the characteristic function is provided as the optimal value of an optimization problem. To assess the robustness of the allocation methods, we use the Lipschitz constant, which quantifies the extent of change in the allocation vector in response to a unit perturbation in the weight vector of the underlying problem. Thereafter, we provide an algorithm for the matching game that returns an allocation belonging to the (1/2-ε)-approximate core with Lipschitz constant O(ε^{-1}). Additionally, we provide an algorithm for a minimum spanning tree game that returns an allocation belonging to the 4-approximate core with a constant Lipschitz constant. The Shapley value is a popular allocation that satisfies several desirable properties. Therefore, we investigate the robustness of the Shapley value. We demonstrate that the Lipschitz constant of the Shapley value for the minimum spanning tree is constant, whereas that for the matching game is Ω(log n), where n denotes the number of vertices.
Cite as

Soh Kumabe and Yuichi Yoshida. Lipschitz Continuous Allocations for Optimization Games. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 102:1-102:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{kumabe_et_al:LIPIcs.ICALP.2024.102,
  author =	{Kumabe, Soh and Yoshida, Yuichi},
  title =	{{Lipschitz Continuous Allocations for Optimization Games}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{102:1--102:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.102},
  URN =		{urn:nbn:de:0030-drops-202456},
  doi =		{10.4230/LIPIcs.ICALP.2024.102},
  annote =	{Keywords: Cooperative Games, Lipschitz Continuity}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.78
Isomorphism for Tournaments of Small Twin Width

Authors: Martin Grohe and Daniel Neuen

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
We prove that isomorphism of tournaments of twin width at most k can be decided in time k^O(log k) n^O(1). This implies that the isomorphism problem for classes of tournaments of bounded or moderately growing twin width is in polynomial time. By comparison, there are classes of undirected graphs of bounded twin width that are isomorphism complete, that is, the isomorphism problem for the classes is as hard as the general graph isomorphism problem. Twin width is a graph parameter that has been introduced only recently (Bonnet et al., FOCS 2020), but has received a lot of attention in structural graph theory since then. On directed graphs, it is functionally smaller than clique width. We prove that on tournaments (but not on general directed graphs) it is also functionally smaller than directed tree width (and thus, the same also holds for cut width and directed path width). Hence, our result implies that tournament isomorphism testing is also fixed-parameter tractable when parameterized by any of these parameters. Our isomorphism algorithm heavily employs group-theoretic techniques. This seems to be necessary: as a second main result, we show that the combinatorial Weisfeiler-Leman algorithm does not decide isomorphism of tournaments of twin width at most 35 if its dimension is o(n). (Throughout this abstract, n is the order of the input graphs.)
Cite as

Martin Grohe and Daniel Neuen. Isomorphism for Tournaments of Small Twin Width. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 78:1-78:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{grohe_et_al:LIPIcs.ICALP.2024.78,
  author =	{Grohe, Martin and Neuen, Daniel},
  title =	{{Isomorphism for Tournaments of Small Twin Width}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{78:1--78:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.78},
  URN =		{urn:nbn:de:0030-drops-202216},
  doi =		{10.4230/LIPIcs.ICALP.2024.78},
  annote =	{Keywords: tournament isomorphism, twin width, fixed-parameter tractability, Weisfeiler-Leman algorithm}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.85
Optimal PSPACE-Hardness of Approximating Set Cover Reconfiguration

Authors: Shuichi Hirahara and Naoto Ohsaka

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
In the Minmax Set Cover Reconfiguration problem, given a set system ℱ over a universe 𝒰 and its two covers 𝒞^start and 𝒞^goal of size k, we wish to transform 𝒞^start into 𝒞^goal by repeatedly adding or removing a single set of ℱ while covering the universe 𝒰 in any intermediate state. Then, the objective is to minimize the maximum size of any intermediate cover during transformation. We prove that Minmax Set Cover Reconfiguration and Minmax Dominating Set Reconfiguration are PSPACE-hard to approximate within a factor of 2-(1/polyloglog N), where N is the size of the universe and the number of vertices in a graph, respectively, improving upon Ohsaka (SODA 2024) [Ohsaka, 2024] and Karthik C. S. and Manurangsi (2023) [Karthik C. S. and Manurangsi, 2023]. This is the first result that exhibits a sharp threshold for the approximation factor of any reconfiguration problem because both problems admit a 2-factor approximation algorithm as per Ito, Demaine, Harvey, Papadimitriou, Sideri, Uehara, and Uno (Theor. Comput. Sci., 2011) [Takehiro Ito et al., 2011]. Our proof is based on a reconfiguration analogue of the FGLSS reduction [Feige et al., 1996] from Probabilistically Checkable Reconfiguration Proofs of Hirahara and Ohsaka (STOC 2024) [Hirahara and Ohsaka, 2024]. We also prove that for any constant ε ∈ (0,1), Minmax Hypergraph Vertex Cover Reconfiguration on poly(ε^-1)-uniform hypergraphs is PSPACE-hard to approximate within a factor of 2-ε.
Cite as

Shuichi Hirahara and Naoto Ohsaka. Optimal PSPACE-Hardness of Approximating Set Cover Reconfiguration. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 85:1-85:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{hirahara_et_al:LIPIcs.ICALP.2024.85,
  author =	{Hirahara, Shuichi and Ohsaka, Naoto},
  title =	{{Optimal PSPACE-Hardness of Approximating Set Cover Reconfiguration}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{85:1--85:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.85},
  URN =		{urn:nbn:de:0030-drops-202283},
  doi =		{10.4230/LIPIcs.ICALP.2024.85},
  annote =	{Keywords: reconfiguration problems, hardness of approximation, probabilistic proof systems, FGLSS reduction}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2024.88
Satisfiability to Coverage in Presence of Fairness, Matroid, and Global Constraints

Authors: Tanmay Inamdar, Pallavi Jain, Daniel Lokshtanov, Abhishek Sahu, Saket Saurabh, and Anannya Upasana

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
In the MaxSAT with Cardinality Constraint problem (CC-MaxSAT), we are given a CNF-formula Φ, and a positive integer k, and the goal is to find an assignment β with at most k variables set to true (also called a weight k-assignment) such that the number of clauses satisfied by β is maximized. Maximum Coverage can be seen as a special case of CC-MaxSat, where the formula Φ is monotone, i.e., does not contain any negative literals. CC-MaxSat and Maximum Coverage are extremely well-studied problems in the approximation algorithms as well as the parameterized complexity literature. Our first conceptual contribution is that CC-MaxSat and Maximum Coverage are equivalent to each other in the context of FPT-Approximation parameterized by k (here, the approximation is in terms of the number of clauses satisfied/elements covered). In particular, we give a randomized reduction from CC-MaxSat to Maximum Coverage running in time 𝒪(1/ε)^{k} ⋅ (m+n)^{𝒪(1)} that preserves the approximation guarantee up to a factor of (1-ε). Furthermore, this reduction also works in the presence of "fairness" constraints on the satisfied clauses, as well as matroid constraints on the set of variables that are assigned true. Here, the "fairness" constraints are modeled by partitioning the clauses of the formula Φ into r different colors, and the goal is to find an assignment that satisfies at least t_j clauses of each color 1 ≤ j ≤ r. Armed with this reduction, we focus on designing FPT-Approximation schemes (FPT-ASes) for Maximum Coverage and its generalizations. Our algorithms are based on a novel combination of a variety of ideas, including a carefully designed probability distribution that exploits sparse coverage functions. These algorithms substantially generalize the results in Jain et al. [SODA 2023] for CC-MaxSat and Maximum Coverage for K_{d,d}-free set systems (i.e., no d sets share d elements), as well as a recent FPT-AS for Matroid Constrained Maximum Coverage by Sellier [ESA 2023] for frequency-d set systems.
Cite as

Tanmay Inamdar, Pallavi Jain, Daniel Lokshtanov, Abhishek Sahu, Saket Saurabh, and Anannya Upasana. Satisfiability to Coverage in Presence of Fairness, Matroid, and Global Constraints. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 88:1-88:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{inamdar_et_al:LIPIcs.ICALP.2024.88,
  author =	{Inamdar, Tanmay and Jain, Pallavi and Lokshtanov, Daniel and Sahu, Abhishek and Saurabh, Saket and Upasana, Anannya},
  title =	{{Satisfiability to Coverage in Presence of Fairness, Matroid, and Global Constraints}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{88:1--88:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.88},
  URN =		{urn:nbn:de:0030-drops-202318},
  doi =		{10.4230/LIPIcs.ICALP.2024.88},
  annote =	{Keywords: Partial Vertex Cover, Max SAT, FPT Approximation, Matroids}
}
Document
Track B: Automata, Logic, Semantics, and Theory of Programming
DOI: 10.4230/LIPIcs.ICALP.2024.142
An Efficient Quantifier Elimination Procedure for Presburger Arithmetic

Authors: Christoph Haase, Shankara Narayanan Krishna, Khushraj Madnani, Om Swostik Mishra, and Georg Zetzsche

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)

Abstract
All known quantifier elimination procedures for Presburger arithmetic require doubly exponential time for eliminating a single block of existentially quantified variables. It has even been claimed in the literature that this upper bound is tight. We observe that this claim is incorrect and develop, as the main result of this paper, a quantifier elimination procedure eliminating a block of existentially quantified variables in singly exponential time. As corollaries, we can establish the precise complexity of numerous problems. Examples include deciding (i) monadic decomposability for existential formulas, (ii) whether an existential formula defines a well-quasi ordering or, more generally, (iii) certain formulas of Presburger arithmetic with Ramsey quantifiers. Moreover, despite the exponential blowup, our procedure shows that under mild assumptions, even NP upper bounds for decision problems about quantifier-free formulas can be transferred to existential formulas. The technical basis of our results is a kind of small model property for parametric integer programming that generalizes the seminal results by von zur Gathen and Sieveking on small integer points in convex polytopes.
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Christoph Haase, Shankara Narayanan Krishna, Khushraj Madnani, Om Swostik Mishra, and Georg Zetzsche. An Efficient Quantifier Elimination Procedure for Presburger Arithmetic. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 142:1-142:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{haase_et_al:LIPIcs.ICALP.2024.142,
  author =	{Haase, Christoph and Krishna, Shankara Narayanan and Madnani, Khushraj and Mishra, Om Swostik and Zetzsche, Georg},
  title =	{{An Efficient Quantifier Elimination Procedure for Presburger Arithmetic}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{142:1--142:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.142},
  URN =		{urn:nbn:de:0030-drops-202856},
  doi =		{10.4230/LIPIcs.ICALP.2024.142},
  annote =	{Keywords: Presburger arithmetic, quantifier elimination, parametric integer programming, convex geometry}
}
Document
DOI: 10.4230/DagMan.10.1.1
Current and Future Challenges in Knowledge Representation and Reasoning (Dagstuhl Perspectives Workshop 22282)

Authors: James P. Delgrande, Birte Glimm, Thomas Meyer, Miroslaw Truszczynski, and Frank Wolter

Published in: Dagstuhl Manifestos, Volume 10, Issue 1 (2024)

Abstract
Knowledge Representation and Reasoning is a central, longstanding, and active area of Artificial Intelligence. Over the years it has evolved significantly; more recently it has been challenged and complemented by research in areas such as machine learning and reasoning under uncertainty. In July 2022,sser a Dagstuhl Perspectives workshop was held on Knowledge Representation and Reasoning. The goal of the workshop was to describe the state of the art in the field, including its relation with other areas, its shortcomings and strengths, together with recommendations for future progress. We developed this manifesto based on the presentations, panels, working groups, and discussions that took place at the Dagstuhl Workshop. It is a declaration of our views on Knowledge Representation: its origins, goals, milestones, and current foci; its relation to other disciplines, especially to Artificial Intelligence; and on its challenges, along with key priorities for the next decade.
Cite as

James P. Delgrande, Birte Glimm, Thomas Meyer, Miroslaw Truszczynski, and Frank Wolter. Current and Future Challenges in Knowledge Representation and Reasoning (Dagstuhl Perspectives Workshop 22282). In Dagstuhl Manifestos, Volume 10, Issue 1, pp. 1-61, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{delgrande_et_al:DagMan.10.1.1,
  author =	{Delgrande, James P. and Glimm, Birte and Meyer, Thomas and Truszczynski, Miroslaw and Wolter, Frank},
  title =	{{Current and Future Challenges in Knowledge Representation and Reasoning (Dagstuhl Perspectives Workshop 22282)}},
  pages =	{1--61},
  journal =	{Dagstuhl Manifestos},
  ISSN =	{2193-2433},
  year =	{2024},
  volume =	{10},
  number =	{1},
  editor =	{Delgrande, James P. and Glimm, Birte and Meyer, Thomas and Truszczynski, Miroslaw and Wolter, Frank},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagMan.10.1.1},
  URN =		{urn:nbn:de:0030-drops-201403},
  doi =		{10.4230/DagMan.10.1.1},
  annote =	{Keywords: Knowledge representation and reasoning, Applications of logics, Declarative representations, Formal logic}
}
Document
DOI: 10.4230/LIPIcs.SWAT.2024.29
Edge Multiway Cut and Node Multiway Cut Are Hard for Planar Subcubic Graphs

Authors: Matthew Johnson, Barnaby Martin, Sukanya Pandey, Daniël Paulusma, Siani Smith, and Erik Jan van Leeuwen

Published in: LIPIcs, Volume 294, 19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024)

Abstract
It is known that the weighted version of Edge Multiway Cut (also known as Multiterminal Cut) is NP-complete on planar graphs of maximum degree 3. In contrast, for the unweighted version, NP-completeness is only known for planar graphs of maximum degree 11. In fact, the complexity of unweighted Edge Multiway Cut was open for graphs of maximum degree 3 for over twenty years. We prove that the unweighted version is NP-complete even for planar graphs of maximum degree 3. As weighted Edge Multiway Cut is polynomial-time solvable for graphs of maximum degree at most 2, we have now closed the complexity gap. We also prove that (unweighted) Node Multiway Cut (both with and without deletable terminals) is NP-complete for planar graphs of maximum degree 3. By combining our results with known results, we can apply two meta-classifications on graph containment from the literature. This yields full dichotomies for all three problems on H-topological-minor-free graphs and, should H be finite, on H-subgraph-free graphs as well. Previously, such dichotomies were only implied for H-minor-free graphs.
Cite as

Matthew Johnson, Barnaby Martin, Sukanya Pandey, Daniël Paulusma, Siani Smith, and Erik Jan van Leeuwen. Edge Multiway Cut and Node Multiway Cut Are Hard for Planar Subcubic Graphs. In 19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 294, pp. 29:1-29:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{johnson_et_al:LIPIcs.SWAT.2024.29,
  author =	{Johnson, Matthew and Martin, Barnaby and Pandey, Sukanya and Paulusma, Dani\"{e}l and Smith, Siani and van Leeuwen, Erik Jan},
  title =	{{Edge Multiway Cut and Node Multiway Cut Are Hard for Planar Subcubic Graphs}},
  booktitle =	{19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024)},
  pages =	{29:1--29:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-318-8},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{294},
  editor =	{Bodlaender, Hans L.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2024.29},
  URN =		{urn:nbn:de:0030-drops-200699},
  doi =		{10.4230/LIPIcs.SWAT.2024.29},
  annote =	{Keywords: multiway cut, planar subcubic graph, complexity dichotomy, graph containment}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2023.57
Complexity Framework for Forbidden Subgraphs III: When Problems Are Tractable on Subcubic Graphs

Authors: Matthew Johnson, Barnaby Martin, Sukanya Pandey, Daniël Paulusma, Siani Smith, and Erik Jan van Leeuwen

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Abstract
For any finite set ℋ = {H_1,…,H_p} of graphs, a graph is ℋ-subgraph-free if it does not contain any of H_1,…,H_p as a subgraph. In recent work, meta-classifications have been studied: these show that if graph problems satisfy certain prescribed conditions, their complexity can be classified on classes of ℋ-subgraph-free graphs. We continue this work and focus on problems that have polynomial-time solutions on classes that have bounded treewidth or maximum degree at most 3 and examine their complexity on H-subgraph-free graph classes where H is a connected graph. With this approach, we obtain comprehensive classifications for (Independent) Feedback Vertex Set, Connected Vertex Cover, Colouring and Matching Cut. This resolves a number of open problems. We highlight that, to establish that Independent Feedback Vertex Set belongs to this collection of problems, we first show that it can be solved in polynomial time on graphs of maximum degree 3. We demonstrate that, with the exception of the complete graph on four vertices, each graph in this class has a minimum size feedback vertex set that is also an independent set.
Cite as

Matthew Johnson, Barnaby Martin, Sukanya Pandey, Daniël Paulusma, Siani Smith, and Erik Jan van Leeuwen. Complexity Framework for Forbidden Subgraphs III: When Problems Are Tractable on Subcubic Graphs. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 57:1-57:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{johnson_et_al:LIPIcs.MFCS.2023.57,
  author =	{Johnson, Matthew and Martin, Barnaby and Pandey, Sukanya and Paulusma, Dani\"{e}l and Smith, Siani and van Leeuwen, Erik Jan},
  title =	{{Complexity Framework for Forbidden Subgraphs III: When Problems Are Tractable on Subcubic Graphs}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{57:1--57:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.57},
  URN =		{urn:nbn:de:0030-drops-185914},
  doi =		{10.4230/LIPIcs.MFCS.2023.57},
  annote =	{Keywords: forbidden subgraphs, independent feedback vertex set, treewidth}
}
Document
DOI: 10.4230/LIPIcs.DNA.2020.2
Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks

Authors: Robert F. Johnson and Lulu Qian

Published in: LIPIcs, Volume 174, 26th International Conference on DNA Computing and Molecular Programming (DNA 26) (2020)

Abstract
In molecular programming, the Chemical Reaction Network model is often used to describe real or hypothetical systems. Often, an interesting computational task can be done with a known hypothetical Chemical Reaction Network, but often such networks have no known physical implementation. One of the important breakthroughs in the field was that any Chemical Reaction Network can be physically implemented, approximately, using DNA strand displacement mechanisms. This allows us to treat the Chemical Reaction Network model as a programming language and the implementation schemes as its compiler. This also suggests that it would be useful to optimize the result of such a compilation, and in general to find effective ways to design better DNA strand displacement systems. We discuss DNA strand displacement systems in terms of "motifs", short sequences of elementary DNA strand displacement reactions. We argue that describing such motifs in terms of their inputs and outputs, then building larger systems out of the abstracted motifs, can be an efficient way of designing DNA strand displacement systems. We discuss four previously studied motifs in this abstracted way, and present a new motif based on cooperative 4-way strand exchange. We then show how Chemical Reaction Network implementations can be built out of abstracted motifs, discussing existing implementations as well as presenting two new implementations based on 4-way strand exchange, one of which uses the new cooperative motif. The new implementations both have two desirable properties not found in existing implementations, namely both use only at most 2-stranded DNA complexes for signal and fuel complexes and both are physically reversible. There are reasons to believe that those properties may make them more robust and energy-efficient, but at the expense of using more fuel complexes than existing implementation schemes.
Cite as

Robert F. Johnson and Lulu Qian. Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks. In 26th International Conference on DNA Computing and Molecular Programming (DNA 26). Leibniz International Proceedings in Informatics (LIPIcs), Volume 174, pp. 2:1-2:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

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@InProceedings{johnson_et_al:LIPIcs.DNA.2020.2,
  author =	{Johnson, Robert F. and Qian, Lulu},
  title =	{{Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks}},
  booktitle =	{26th International Conference on DNA Computing and Molecular Programming (DNA 26)},
  pages =	{2:1--2:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-163-4},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{174},
  editor =	{Geary, Cody and Patitz, Matthew J.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.2020.2},
  URN =		{urn:nbn:de:0030-drops-129557},
  doi =		{10.4230/LIPIcs.DNA.2020.2},
  annote =	{Keywords: Molecular programming, DNA computing, Chemical Reaction Networks, DNA strand displacement}
}
Document
DOI: 10.4230/LIPIcs.CPM.2019.20
Finding a Small Number of Colourful Components

Authors: Laurent Bulteau, Konrad K. Dabrowski, Guillaume Fertin, Matthew Johnson, Daniël Paulusma, and Stéphane Vialette

Published in: LIPIcs, Volume 128, 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)

Abstract
A partition (V_1,...,V_k) of the vertex set of a graph G with a (not necessarily proper) colouring c is colourful if no two vertices in any V_i have the same colour and every set V_i induces a connected graph. The Colourful Partition problem, introduced by Adamaszek and Popa, is to decide whether a coloured graph (G,c) has a colourful partition of size at most k. This problem is related to the Colourful Components problem, introduced by He, Liu and Zhao, which is to decide whether a graph can be modified into a graph whose connected components form a colourful partition by deleting at most p edges. Despite the similarities in their definitions, we show that Colourful Partition and Colourful Components may have different complexities for restricted instances. We tighten known NP-hardness results for both problems by closing a number of complexity gaps. In addition, we prove new hardness and tractability results for Colourful Partition. In particular, we prove that deciding whether a coloured graph (G,c) has a colourful partition of size 2 is NP-complete for coloured planar bipartite graphs of maximum degree 3 and path-width 3, but polynomial-time solvable for coloured graphs of treewidth 2. Rather than performing an ad hoc study, we use our classical complexity results to guide us in undertaking a thorough parameterized study of Colourful Partition. We show that this leads to suitable parameters for obtaining FPT results and moreover prove that Colourful Components and Colourful Partition may have different parameterized complexities, depending on the chosen parameter.
Cite as

Laurent Bulteau, Konrad K. Dabrowski, Guillaume Fertin, Matthew Johnson, Daniël Paulusma, and Stéphane Vialette. Finding a Small Number of Colourful Components. In 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 128, pp. 20:1-20:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{bulteau_et_al:LIPIcs.CPM.2019.20,
  author =	{Bulteau, Laurent and Dabrowski, Konrad K. and Fertin, Guillaume and Johnson, Matthew and Paulusma, Dani\"{e}l and Vialette, St\'{e}phane},
  title =	{{Finding a Small Number of Colourful Components}},
  booktitle =	{30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
  pages =	{20:1--20:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-103-0},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{128},
  editor =	{Pisanti, Nadia and P. Pissis, Solon},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.20},
  URN =		{urn:nbn:de:0030-drops-104914},
  doi =		{10.4230/LIPIcs.CPM.2019.20},
  annote =	{Keywords: Colourful component, colourful partition, tree, treewidth, vertex cover}
}
Document
DOI: 10.4230/OASIcs.ICCSW.2018.11
Harnessing AI For Research

Authors: Matthew Johnson

Published in: OASIcs, Volume 66, 2018 Imperial College Computing Student Workshop (ICCSW 2018)

Abstract
Artificial Intelligence is increasingly being used to both augment existing fields of research and open up new avenues of discovery. From quality control for imaging flow cytometry to computational musicology, modern AI is an exciting new tool for research and thus knowing how to engineer AI systems in a research context is a vital new skill for RSEs to acquire. In this talk, I will outline four different areas of AI: supervised learning, unsupervised learning, interactive learning, and Bayesian learning. For each of these approaches, I will discuss how they typically map to different research problems and explore best practices for RSEs via specific use cases. At the end of the talk, you will have received a high-level overview of AI technologies and their use in research, have seen some cool examples of how AI has been used in a wide range of research areas, and have a good sense of where to go to learn more.
Cite as

Matthew Johnson. Harnessing AI For Research. In 2018 Imperial College Computing Student Workshop (ICCSW 2018). Open Access Series in Informatics (OASIcs), Volume 66, p. 11:1, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{johnson:OASIcs.ICCSW.2018.11,
  author =	{Johnson, Matthew},
  title =	{{Harnessing AI For Research}},
  booktitle =	{2018 Imperial College Computing Student Workshop (ICCSW 2018)},
  pages =	{11:1--11:1},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-097-2},
  ISSN =	{2190-6807},
  year =	{2019},
  volume =	{66},
  editor =	{Pirovano, Edoardo and Graversen, Eva},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.ICCSW.2018.11},
  URN =		{urn:nbn:de:0030-drops-101922},
  doi =		{10.4230/OASIcs.ICCSW.2018.11},
  annote =	{Keywords: Artificial intelligence}
}
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