15 Search Results for "Sullivan, Blair D."

Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.43
A Finer View of the Parameterized Landscape of Labeled Graph Contractions

Authors: Yashaswini Mathur and Prafullkumar Tale

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
We study the Labeled Contractibility problem, where the input consists of two vertex-labeled graphs G and H, and the goal is to determine whether H can be obtained from G via a sequence of edge contractions. Lafond and Marchand [WADS 2025] initiated the parameterized complexity study of this problem, showing it to be W[1]-hard when parameterized by the number k of allowed contractions. They also proved that the problem is fixed-parameter tractable when parameterized by the tree-width tw of G, via an application of Courcelle’s theorem resulting in a non-constructive algorithm. In this work, we present a constructive fixed-parameter algorithm for Labeled Contractibility with running time 2^{𝒪(tw²)} ⋅ |V(G)|^{𝒪(1)}. We also prove that unless the Exponential Time Hypothesis ({ETH}) fails, it does not admit an algorithm running in time 2^{o(tw²)} ⋅ |V(G)|^{𝒪(1)}. This result adds Labeled Contractibility to a small list of problems that admit such a lower bound and matching algorithm. We further strengthen existing hardness results by showing that the problem remains NP-complete even when both input graphs have bounded maximum degree. We also investigate parameterizations by (k + δ(G)) where δ(G) denotes the degeneracy of G, and rule out the existence of subexponential-time algorithms. This answers question raised in Lafond and Marchand [WADS 2025]. We additionally provide an improved FPT algorithm with better dependence on (k + δ(G)) than previously known. Finally, we analyze a brute-force algorithm for Labeled Contractibility with running time |V(H)|^{𝒪(|V(G)|)}, and show that this running time is optimal under {ETH}.
Cite as

Yashaswini Mathur and Prafullkumar Tale. A Finer View of the Parameterized Landscape of Labeled Graph Contractions. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 43:1-43:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mathur_et_al:LIPIcs.FSTTCS.2025.43,
  author =	{Mathur, Yashaswini and Tale, Prafullkumar},
  title =	{{A Finer View of the Parameterized Landscape of Labeled Graph Contractions}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{43:1--43:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.43},
  URN =		{urn:nbn:de:0030-drops-251237},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.43},
  annote =	{Keywords: Labeled Contraction, ETH Lower-bound, Treewidth, NP-hard}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.55
Safe Sequences via Dominators in DAGs for Path-Covering Problems

Authors: Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
A path-covering problem on a directed acyclic graph (DAG) requires finding a set of source-to-sink paths that cover all the nodes, all the arcs, or subsets thereof, and additionally they are optimal with respect to some function. In this paper we study safe sequences of nodes or arcs, namely sequences that appear in some path of every path cover of a DAG. We show that safe sequences admit a simple characterization via cutnodes. Moreover, we establish a connection between maximal safe sequences and leaf-to-root paths in the source- and sink-dominator trees of the DAG, which may be of independent interest in the extensive literature on dominators. With dominator trees, safe sequences admit an O(n)-size representation and a linear-time output-sensitive enumeration algorithm running in time O(m + o), where n and m are the number of nodes and arcs, respectively, and o is the total length of the maximal safe sequences. We then apply maximal safe sequences to simplify Integer Linear Programs (ILPs) for two path-covering problems, LeastSquares and MinPathError, which are at the core of RNA transcript assembly problems from bioinformatics. On various datasets, maximal safe sequences can be computed in under 0.1 seconds per graph, on average, and ILP solvers whose search space is reduced in this manner exhibit significant speed-ups. For example on graphs with a large width, average speed-ups are in the range 50-250× for MinPathError and in the range 80-350× for LeastSquares. Optimizing ILPs using safe sequences can thus become a fast building block of practical RNA transcript assembly tools, and more generally, of path-covering problems.
Cite as

Francisco Sena, Romeo Rizzi, and Alexandru I. Tomescu. Safe Sequences via Dominators in DAGs for Path-Covering Problems. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 55:1-55:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{sena_et_al:LIPIcs.ESA.2025.55,
  author =	{Sena, Francisco and Rizzi, Romeo and Tomescu, Alexandru I.},
  title =	{{Safe Sequences via Dominators in DAGs for Path-Covering Problems}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{55:1--55:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.55},
  URN =		{urn:nbn:de:0030-drops-245230},
  doi =		{10.4230/LIPIcs.ESA.2025.55},
  annote =	{Keywords: directed acyclic graph, path cover, dominator tree, integer linear programming, least squares, minimum path error}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.20
Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components

Authors: Sriram Bhyravarapu, Pritesh Kumar, Madhumita Kundu, Shivesh K. Roy, Sahiba, and Saket Saurabh

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
Motivated by the growing interest in graph clustering and the framework proposed during the Dagstuhl Seminar 23331, we consider a natural specialization of this general approach (as also suggested during the seminar). The seminar introduced a broad perspective on clustering, where the goal is to partition a graph into connected components (or "clusters") that satisfy simple structural integrity constraints - not necessarily limited to cliques. In our work, we focus on the case where each cluster is required to have bounded vertex cover number. Specifically, a connected component C satisfies this condition if there exists a set S ⊆ V(C) with |S| ≤ d such that C - S is an independent set. We study this within the framework of the {Vertex Deletion to d-Vertex Cover Components} ({Vertex Deletion to d-VCC}) problem: given a graph G and an integer k, the task is to determine whether there exists a vertex set S ⊆ V(G) of size at most k such that every connected component of G - S has vertex cover number at most d. We also examine the edge-deletion variant, {Edge Deletion to d-Vertex Cover Components} ({Edge Deletion to d-VCC}), where the goal is to delete at most k edges so that each connected component of the resulting graph has vertex cover number at most d. We obtain following results. 1) {Vertex Deletion to d-VCC} admits a kernel with {𝒪}(d⁶k³) vertices and {𝒪}(d⁹k⁴) edges. 2) {Edge Deletion to d-VCC}, admits a kernel with {𝒪}(d⁴k) vertices and {𝒪}(d⁵k) edges. Both of our kernelization algorithms run in time 𝒪(1.253^d ⋅ (kd)^{𝒪(1)} ⋅ n log n). It is important to note that, unless the Exponential Time Hypothesis (ETH) fails, the dependence on d cannot be improved to 2^{o(d)}, as the case k = 0 reduces to solving the classical Vertex Cover problem, which is known to require 2^{Ω(d)} time under ETH. A key ingredient in our kernelization algorithms is a structural result about the hereditary graph class 𝒢_d, consisting of graphs in which every connected component has vertex cover number at most d. We show that 𝒢_d admits a finite obstruction set (with respect to the induced subgraph relation) of size 2^{𝒪(d²)}, where each obstruction graph has at most 3d + 2 vertices. This combinatorial result may be of independent interest.
Cite as

Sriram Bhyravarapu, Pritesh Kumar, Madhumita Kundu, Shivesh K. Roy, Sahiba, and Saket Saurabh. Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 20:1-20:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bhyravarapu_et_al:LIPIcs.MFCS.2025.20,
  author =	{Bhyravarapu, Sriram and Kumar, Pritesh and Kundu, Madhumita and Roy, Shivesh K. and Sahiba and Saurabh, Saket},
  title =	{{Kernelization in Almost Linear Time for Clustering into Bounded Vertex Cover Components}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{20:1--20:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.20},
  URN =		{urn:nbn:de:0030-drops-241276},
  doi =		{10.4230/LIPIcs.MFCS.2025.20},
  annote =	{Keywords: Parameterized complexity, Polynomial Kernels, Vertex Cover, Finite Forbidden Characterization}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.64
Cluster Editing on Cographs and Related Classes

Authors: Manuel Lafond, Alitzel López Sánchez, and Weidong Luo

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
In the Cluster Editing problem, sometimes known as (unweighted) Correlation Clustering, we must insert and delete a minimum number of edges to achieve a graph in which every connected component is a clique. Owing to its applications in computational biology, social network analysis, machine learning, and others, this problem has been widely studied for decades and is still undergoing active research. There exist several parameterized algorithms for general graphs, but little is known about the complexity of the problem on specific classes of graphs. Among the few important results in this direction, if only deletions are allowed, the problem can be solved in polynomial time on cographs, which are the P₄-free graphs. However, the complexity of the broader editing problem on cographs is still open. We show that even on a very restricted subclass of cographs, the problem is NP-hard, W[1]-hard when parameterized by the number p of desired clusters, and that time n^o(p/log p) is forbidden under the ETH. This shows that the editing variant is substantially harder than the deletion-only case, and that hardness holds for the many superclasses of cographs (including graphs of clique-width at most 2, perfect graphs, circle graphs, permutation graphs). On the other hand, we provide an almost tight upper bound of time n^O(p), which is a consequence of a more general n^O(cw⋅p) time algorithm, where cw is the clique-width. Given that forbidding P₄s maintains NP-hardness, we look at {P₄, C₄}-free graphs, also known as trivially perfect graphs, and provide a cubic-time algorithm for this class.
Cite as

Manuel Lafond, Alitzel López Sánchez, and Weidong Luo. Cluster Editing on Cographs and Related Classes. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 64:1-64:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lafond_et_al:LIPIcs.STACS.2025.64,
  author =	{Lafond, Manuel and L\'{o}pez S\'{a}nchez, Alitzel and Luo, Weidong},
  title =	{{Cluster Editing on Cographs and Related Classes}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{64:1--64:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.64},
  URN =		{urn:nbn:de:0030-drops-228895},
  doi =		{10.4230/LIPIcs.STACS.2025.64},
  annote =	{Keywords: Cluster editing, cographs, parameterized algorithms, clique-width, trivially perfect graphs}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2025.58
The Computational Complexity of Factored Graphs

Authors: Shreya Gupta, Boyang Huang, Russell Impagliazzo, Stanley Woo, and Christopher Ye

Published in: LIPIcs, Volume 325, 16th Innovations in Theoretical Computer Science Conference (ITCS 2025)

Abstract
While graphs and abstract data structures can be large and complex, practical instances are often regular or highly structured. If the instance has sufficient structure, we might hope to compress the object into a more succinct representation. An efficient algorithm (with respect to the compressed input size) could then lead to more efficient computations than algorithms taking the explicit, uncompressed object as input. This leads to a natural question: when does knowing the input instance has a more succinct representation make computation easier? We initiate the study of the computational complexity of problems on factored graphs: graphs that are given as a formula of products and unions on smaller graphs. For any graph problem, we define a parameterized version that takes factored graphs as input, parameterized by the number of (smaller) ordinary graphs used to construct the factored graph. In this setting, we characterize the parameterized complexity of several natural graph problems, exhibiting a variety of complexities. We show that a decision version of lexicographically first maximal independent set is XP-complete, and therefore unconditionally not fixed-parameter tractable (FPT). On the other hand, we show that clique counting is FPT. Finally, we show that reachability is XNL-complete. Moreover, XNL is contained in FPT if and only if NL is contained in some fixed polynomial time.
Cite as

Shreya Gupta, Boyang Huang, Russell Impagliazzo, Stanley Woo, and Christopher Ye. The Computational Complexity of Factored Graphs. In 16th Innovations in Theoretical Computer Science Conference (ITCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 325, pp. 58:1-58:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gupta_et_al:LIPIcs.ITCS.2025.58,
  author =	{Gupta, Shreya and Huang, Boyang and Impagliazzo, Russell and Woo, Stanley and Ye, Christopher},
  title =	{{The Computational Complexity of Factored Graphs}},
  booktitle =	{16th Innovations in Theoretical Computer Science Conference (ITCS 2025)},
  pages =	{58:1--58:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-361-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{325},
  editor =	{Meka, Raghu},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2025.58},
  URN =		{urn:nbn:de:0030-drops-226865},
  doi =		{10.4230/LIPIcs.ITCS.2025.58},
  annote =	{Keywords: Parameterized Complexity, Fine-grained complexity, Fixed-parameter tractability, Graph algorithms}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2024.15
Preprocessing to Reduce the Search Space for Odd Cycle Transversal

Authors: Bart M. P. Jansen, Yosuke Mizutani, Blair D. Sullivan, and Ruben F. A. Verhaegh

Published in: LIPIcs, Volume 321, 19th International Symposium on Parameterized and Exact Computation (IPEC 2024)

Abstract
The NP-hard Odd Cycle Transversal problem asks for a minimum vertex set whose removal from an undirected input graph G breaks all odd cycles, and thereby yields a bipartite graph. The problem is well-known to be fixed-parameter tractable when parameterized by the size k of the desired solution. It also admits a randomized kernelization of polynomial size, using the celebrated matroid toolkit by Kratsch and Wahlström. The kernelization guarantees a reduction in the total size of an input graph, but does not guarantee any decrease in the size of the solution to be sought; the latter governs the size of the search space for FPT algorithms parameterized by k. We investigate under which conditions an efficient algorithm can detect one or more vertices that belong to an optimal solution to Odd Cycle Transversal. By drawing inspiration from the popular crown reduction rule for Vertex Cover, and the notion of antler decompositions that was recently proposed for Feedback Vertex Set, we introduce a graph decomposition called tight odd cycle cut that can be used to certify that a vertex set is part of an optimal odd cycle transversal. While it is NP-hard to compute such a graph decomposition, we develop parameterized algorithms to find a set of at least k vertices that belong to an optimal odd cycle transversal when the input contains a tight odd cycle cut certifying the membership of k vertices in an optimal solution. The resulting algorithm formalizes when the search space for the solution-size parameterization of Odd Cycle Transversal can be reduced by preprocessing. To obtain our results, we develop a graph reduction step that can be used to simplify the graph to the point that the odd cycle cut can be detected via color coding.
Cite as

Bart M. P. Jansen, Yosuke Mizutani, Blair D. Sullivan, and Ruben F. A. Verhaegh. Preprocessing to Reduce the Search Space for Odd Cycle Transversal. In 19th International Symposium on Parameterized and Exact Computation (IPEC 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 321, pp. 15:1-15:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{jansen_et_al:LIPIcs.IPEC.2024.15,
  author =	{Jansen, Bart M. P. and Mizutani, Yosuke and Sullivan, Blair D. and Verhaegh, Ruben F. A.},
  title =	{{Preprocessing to Reduce the Search Space for Odd Cycle Transversal}},
  booktitle =	{19th International Symposium on Parameterized and Exact Computation (IPEC 2024)},
  pages =	{15:1--15:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-353-9},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{321},
  editor =	{Bonnet, \'{E}douard and Rz\k{a}\.{z}ewski, Pawe{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2024.15},
  URN =		{urn:nbn:de:0030-drops-222412},
  doi =		{10.4230/LIPIcs.IPEC.2024.15},
  annote =	{Keywords: odd cycle transversal, parameterized complexity, graph decomposition, search-space reduction, witness of optimality}
}
Document
DOI: 10.4230/LIPIcs.SWAT.2024.8
Correlation Clustering with Vertex Splitting

Authors: Matthias Bentert, Alex Crane, Pål Grønås Drange, Felix Reidl, and Blair D. Sullivan

Published in: LIPIcs, Volume 294, 19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024)

Abstract
We explore CLUSTER EDITING and its generalization CORRELATION CLUSTERING with a new operation called permissive vertex splitting which addresses finding overlapping clusters in the face of uncertain information. We determine that both problems are NP-hard, yet they exhibit significant differences in terms of parameterized complexity and approximability. For CLUSTER EDITING WITH PERMISSIVE VERTEX SPLITTING, we show a polynomial kernel when parameterized by the solution size and develop a polynomial-time 7-approximation. In the case of CORRELATION CLUSTERING, we establish para-NP-hardness when parameterized by the solution size and demonstrate that computing an n^{1-ε}-approximation is NP-hard for any constant ε > 0. Additionally, we extend an established link between CORRELATION CLUSTERING and MULTICUT to the setting with permissive vertex splits.
Cite as

Matthias Bentert, Alex Crane, Pål Grønås Drange, Felix Reidl, and Blair D. Sullivan. Correlation Clustering with Vertex Splitting. In 19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 294, pp. 8:1-8:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bentert_et_al:LIPIcs.SWAT.2024.8,
  author =	{Bentert, Matthias and Crane, Alex and Drange, P\r{a}l Gr{\o}n\r{a}s and Reidl, Felix and Sullivan, Blair D.},
  title =	{{Correlation Clustering with Vertex Splitting}},
  booktitle =	{19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024)},
  pages =	{8:1--8:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-318-8},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{294},
  editor =	{Bodlaender, Hans L.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2024.8},
  URN =		{urn:nbn:de:0030-drops-200483},
  doi =		{10.4230/LIPIcs.SWAT.2024.8},
  annote =	{Keywords: graph modification, cluster editing, overlapping clustering, approximation, parameterized complexity}
}
Document
DOI: 10.4230/DagRep.13.8.1
Recent Trends in Graph Decomposition (Dagstuhl Seminar 23331)

Authors: George Karypis, Christian Schulz, Darren Strash, Deepak Ajwani, Rob H. Bisseling, Katrin Casel, Ümit V. Çatalyürek, Cédric Chevalier, Florian Chudigiewitsch, Marcelo Fonseca Faraj, Michael Fellows, Lars Gottesbüren, Tobias Heuer, Kamer Kaya, Jakub Lacki, Johannes Langguth, Xiaoye Sherry Li, Ruben Mayer, Johannes Meintrup, Yosuke Mizutani, François Pellegrini, Fabrizio Petrini, Frances Rosamond, Ilya Safro, Sebastian Schlag, Roohani Sharma, Blair D. Sullivan, Bora Uçar, and Albert-Jan Yzelman

Published in: Dagstuhl Reports, Volume 13, Issue 8 (2024)

Abstract
This report documents the program and the outcomes of Dagstuhl Seminar 23331 "Recent Trends in Graph Decomposition", which took place from 13. August to 18. August, 2023. The seminar brought together 33 experts from academia and industry to discuss graph decomposition, a pivotal technique for handling massive graphs in applications such as social networks and scientific simulations. The seminar addressed the challenges posed by contemporary hardware designs, the potential of deep neural networks and reinforcement learning in developing heuristics, the unique optimization requirements of large sparse data, and the need for scalable algorithms suitable for emerging architectures. Through presentations, discussions, and collaborative sessions, the event fostered an exchange of innovative ideas, leading to the creation of community notes highlighting key open problems in the field.
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George Karypis, Christian Schulz, Darren Strash, Deepak Ajwani, Rob H. Bisseling, Katrin Casel, Ümit V. Çatalyürek, Cédric Chevalier, Florian Chudigiewitsch, Marcelo Fonseca Faraj, Michael Fellows, Lars Gottesbüren, Tobias Heuer, Kamer Kaya, Jakub Lacki, Johannes Langguth, Xiaoye Sherry Li, Ruben Mayer, Johannes Meintrup, Yosuke Mizutani, François Pellegrini, Fabrizio Petrini, Frances Rosamond, Ilya Safro, Sebastian Schlag, Roohani Sharma, Blair D. Sullivan, Bora Uçar, and Albert-Jan Yzelman. Recent Trends in Graph Decomposition (Dagstuhl Seminar 23331). In Dagstuhl Reports, Volume 13, Issue 8, pp. 1-45, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{karypis_et_al:DagRep.13.8.1,
  author =	{Karypis, George and Schulz, Christian and Strash, Darren and Ajwani, Deepak and Bisseling, Rob H. and Casel, Katrin and \c{C}ataly\"{u}rek, \"{U}mit V. and Chevalier, C\'{e}dric and Chudigiewitsch, Florian and Faraj, Marcelo Fonseca and Fellows, Michael and Gottesb\"{u}ren, Lars and Heuer, Tobias and Kaya, Kamer and Lacki, Jakub and Langguth, Johannes and Li, Xiaoye Sherry and Mayer, Ruben and Meintrup, Johannes and Mizutani, Yosuke and Pellegrini, Fran\c{c}ois and Petrini, Fabrizio and Rosamond, Frances and Safro, Ilya and Schlag, Sebastian and Sharma, Roohani and Sullivan, Blair D. and U\c{c}ar, Bora and Yzelman, Albert-Jan},
  title =	{{Recent Trends in Graph Decomposition (Dagstuhl Seminar 23331)}},
  pages =	{1--45},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2024},
  volume =	{13},
  number =	{8},
  editor =	{Karypis, George and Schulz, Christian and Strash, Darren},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.13.8.1},
  URN =		{urn:nbn:de:0030-drops-198114},
  doi =		{10.4230/DagRep.13.8.1},
  annote =	{Keywords: combinatorial optimization, experimental algorithmics, parallel algorithms}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2023.2
Cluster Editing with Overlapping Communities

Authors: Emmanuel Arrighi, Matthias Bentert, Pål Grønås Drange, Blair D. Sullivan, and Petra Wolf

Published in: LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

Abstract
Cluster Editing, also known as correlation clustering, is a well-studied graph modification problem. In this problem, one is given a graph and allowed to perform up to k edge additions and deletions to transform it into a cluster graph, i.e., a graph consisting of a disjoint union of cliques. However, in real-world networks, clusters are often overlapping. For example, in social networks, a person might belong to several communities - e.g. those corresponding to work, school, or neighborhood. Another strong motivation comes from language networks where trying to cluster words with similar usage can be confounded by homonyms, that is, words with multiple meanings like "bat". The recently introduced operation of vertex splitting is one natural approach to incorporating such overlap into Cluster Editing. First used in the context of graph drawing, this operation allows a vertex v to be replaced by two vertices whose combined neighborhood is the neighborhood of v (and thus v can belong to more than one cluster). The problem of transforming a graph into a cluster graph using at most k edge additions, edge deletions, or vertex splits is called Cluster Editing with Vertex Splitting and is known to admit a polynomial kernel with respect to k and an O(9^{k²} + n + m)-time (parameterized) algorithm. However, it was not known whether the problem is NP-hard, a question which was originally asked by Abu-Khzam et al. [Combinatorial Optimization, 2018]. We answer this in the affirmative. We further give an improved algorithm running in O(2^{7klog k} + n + m) time.
Cite as

Emmanuel Arrighi, Matthias Bentert, Pål Grønås Drange, Blair D. Sullivan, and Petra Wolf. Cluster Editing with Overlapping Communities. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 2:1-2:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{arrighi_et_al:LIPIcs.IPEC.2023.2,
  author =	{Arrighi, Emmanuel and Bentert, Matthias and Drange, P\r{a}l Gr{\o}n\r{a}s and Sullivan, Blair D. and Wolf, Petra},
  title =	{{Cluster Editing with Overlapping Communities}},
  booktitle =	{18th International Symposium on Parameterized and Exact Computation (IPEC 2023)},
  pages =	{2:1--2:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-305-8},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{285},
  editor =	{Misra, Neeldhara and Wahlstr\"{o}m, Magnus},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.2},
  URN =		{urn:nbn:de:0030-drops-194218},
  doi =		{10.4230/LIPIcs.IPEC.2023.2},
  annote =	{Keywords: graph modification, correlation clustering, vertex splitting, NP-hardness, parameterized algorithm}
}
Document
PACE Solver Description
DOI: 10.4230/LIPIcs.IPEC.2023.36
PACE Solver Description: Hydra Prime

Authors: Yosuke Mizutani, David Dursteler, and Blair D. Sullivan

Published in: LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

Abstract
This note describes our submission to the 2023 PACE Challenge on the computation of twin-width. Our solver Hydra Prime combines modular decomposition with a collection of upper- and lower-bound algorithms, which are alternatingly applied on the prime graphs resulting from the modular decomposition. We introduce two novel approaches which contributed to the solver’s winning performance in the Exact Track: timeline encoding and hydra decomposition. Timeline encoding is a new data structure for computing the width of a given contraction sequence, enabling faster local search; the hydra decomposition is an iterative refinement strategy featuring a small vertex separator.
Cite as

Yosuke Mizutani, David Dursteler, and Blair D. Sullivan. PACE Solver Description: Hydra Prime. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 36:1-36:5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

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@InProceedings{mizutani_et_al:LIPIcs.IPEC.2023.36,
  author =	{Mizutani, Yosuke and Dursteler, David and Sullivan, Blair D.},
  title =	{{PACE Solver Description: Hydra Prime}},
  booktitle =	{18th International Symposium on Parameterized and Exact Computation (IPEC 2023)},
  pages =	{36:1--36:5},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-305-8},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{285},
  editor =	{Misra, Neeldhara and Wahlstr\"{o}m, Magnus},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.36},
  URN =		{urn:nbn:de:0030-drops-194552},
  doi =		{10.4230/LIPIcs.IPEC.2023.36},
  annote =	{Keywords: Twin-width, PACE 2023}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2022.23
Parameterized Complexity of Maximum Happy Set and Densest k-Subgraph

Authors: Yosuke Mizutani and Blair D. Sullivan

Published in: LIPIcs, Volume 249, 17th International Symposium on Parameterized and Exact Computation (IPEC 2022)

Abstract
We present fixed-parameter tractable (FPT) algorithms for two problems, Maximum Happy Set (MaxHS) and Densest k-Subgraph (DkS) - also known as Maximum Edge Happy Set. Given a graph G and an integer k, MaxHS asks for a set S of k vertices such that the number of happy vertices with respect to S is maximized, where a vertex v is happy if v and all its neighbors are in S. We show that MaxHS can be solved in time 𝒪(2^mw ⋅ mw ⋅ k² ⋅ |V(G)|) and 𝒪(8^cw ⋅ k² ⋅ |V(G)|), where mw and cw denote the modular-width and the clique-width of G, respectively. This answers the open questions on fixed-parameter tractability posed in [Asahiro et al., 2021]. The DkS problem asks for a subgraph with k vertices maximizing the number of edges. If we define happy edges as the edges whose endpoints are in S, then DkS can be seen as an edge-variant of MaxHS. In this paper we show that DkS can be solved in time f(nd)⋅|V(G)|^𝒪(1) and 𝒪(2^{cd}⋅ k² ⋅ |V(G)|), where nd and cd denote the neighborhood diversity and the cluster deletion number of G, respectively, and f is some computable function. This result implies that DkS is also fixed-parameter tractable by twin cover number.
Cite as

Yosuke Mizutani and Blair D. Sullivan. Parameterized Complexity of Maximum Happy Set and Densest k-Subgraph. In 17th International Symposium on Parameterized and Exact Computation (IPEC 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 249, pp. 23:1-23:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{mizutani_et_al:LIPIcs.IPEC.2022.23,
  author =	{Mizutani, Yosuke and Sullivan, Blair D.},
  title =	{{Parameterized Complexity of Maximum Happy Set and Densest k-Subgraph}},
  booktitle =	{17th International Symposium on Parameterized and Exact Computation (IPEC 2022)},
  pages =	{23:1--23:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-260-0},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{249},
  editor =	{Dell, Holger and Nederlof, Jesper},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2022.23},
  URN =		{urn:nbn:de:0030-drops-173795},
  doi =		{10.4230/LIPIcs.IPEC.2022.23},
  annote =	{Keywords: parameterized algorithms, maximum happy set, densest k-subgraph, modular-width, clique-width, neighborhood diversity, cluster deletion number, twin cover}
}
Document
DOI: 10.4230/DagRep.11.8.115
Sparsity in Algorithms, Combinatorics and Logic (Dagstuhl Seminar 21391)

Authors: Daniel Král’, Michał Pilipczuk, Sebastian Siebertz, and Blair D. Sullivan

Published in: Dagstuhl Reports, Volume 11, Issue 8 (2022)

Abstract
This report documents the program and the outcomes of Dagstuhl Seminar 21391 "Sparsity in Algorithms, Combinatorics and Logic". The seminar took place in a hybrid format from September 26 - October 1, 2021 and brought together 61 researchers. This report includes a discussion of the motivation of the seminar, presentation of the overall organization, abstracts of talks, and a report from each of the working groups.
Cite as

Daniel Král’, Michał Pilipczuk, Sebastian Siebertz, and Blair D. Sullivan. Sparsity in Algorithms, Combinatorics and Logic (Dagstuhl Seminar 21391). In Dagstuhl Reports, Volume 11, Issue 8, pp. 115-128, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@Article{kral'_et_al:DagRep.11.8.115,
  author =	{Kr\'{a}l’, Daniel and Pilipczuk, Micha{\l} and Siebertz, Sebastian and Sullivan, Blair D.},
  title =	{{Sparsity in Algorithms, Combinatorics and Logic (Dagstuhl Seminar 21391)}},
  pages =	{115--128},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2022},
  volume =	{11},
  number =	{8},
  editor =	{Kr\'{a}l’, Daniel and Pilipczuk, Micha{\l} and Siebertz, Sebastian and Sullivan, Blair D.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.11.8.115},
  URN =		{urn:nbn:de:0030-drops-157718},
  doi =		{10.4230/DagRep.11.8.115},
  annote =	{Keywords: Algorithm design, Parameterised complexity, Sparse graphs, Graph decompositions, Model theory}
}
Document
DOI: 10.4230/LIPIcs.ESA.2019.37
Structural Rounding: Approximation Algorithms for Graphs Near an Algorithmically Tractable Class

Authors: Erik D. Demaine, Timothy D. Goodrich, Kyle Kloster, Brian Lavallee, Quanquan C. Liu, Blair D. Sullivan, Ali Vakilian, and Andrew van der Poel

Published in: LIPIcs, Volume 144, 27th Annual European Symposium on Algorithms (ESA 2019)

Abstract
We develop a framework for generalizing approximation algorithms from the structural graph algorithm literature so that they apply to graphs somewhat close to that class (a scenario we expect is common when working with real-world networks) while still guaranteeing approximation ratios. The idea is to edit a given graph via vertex- or edge-deletions to put the graph into an algorithmically tractable class, apply known approximation algorithms for that class, and then lift the solution to apply to the original graph. We give a general characterization of when an optimization problem is amenable to this approach, and show that it includes many well-studied graph problems, such as Independent Set, Vertex Cover, Feedback Vertex Set, Minimum Maximal Matching, Chromatic Number, (l-)Dominating Set, Edge (l-)Dominating Set, and Connected Dominating Set. To enable this framework, we develop new editing algorithms that find the approximately-fewest edits required to bring a given graph into one of a few important graph classes (in some cases these are bicriteria algorithms which simultaneously approximate both the number of editing operations and the target parameter of the family). For bounded degeneracy, we obtain an O(r log{n})-approximation and a bicriteria (4,4)-approximation which also extends to a smoother bicriteria trade-off. For bounded treewidth, we obtain a bicriteria (O(log^{1.5} n), O(sqrt{log w}))-approximation, and for bounded pathwidth, we obtain a bicriteria (O(log^{1.5} n), O(sqrt{log w} * log n))-approximation. For treedepth 2 (related to bounded expansion), we obtain a 4-approximation. We also prove complementary hardness-of-approximation results assuming P != NP: in particular, these problems are all log-factor inapproximable, except the last which is not approximable below some constant factor 2 (assuming UGC).
Cite as

Erik D. Demaine, Timothy D. Goodrich, Kyle Kloster, Brian Lavallee, Quanquan C. Liu, Blair D. Sullivan, Ali Vakilian, and Andrew van der Poel. Structural Rounding: Approximation Algorithms for Graphs Near an Algorithmically Tractable Class. In 27th Annual European Symposium on Algorithms (ESA 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 144, pp. 37:1-37:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

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@InProceedings{demaine_et_al:LIPIcs.ESA.2019.37,
  author =	{Demaine, Erik D. and Goodrich, Timothy D. and Kloster, Kyle and Lavallee, Brian and Liu, Quanquan C. and Sullivan, Blair D. and Vakilian, Ali and van der Poel, Andrew},
  title =	{{Structural Rounding: Approximation Algorithms for Graphs Near an Algorithmically Tractable Class}},
  booktitle =	{27th Annual European Symposium on Algorithms (ESA 2019)},
  pages =	{37:1--37:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-124-5},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{144},
  editor =	{Bender, Michael A. and Svensson, Ola and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2019.37},
  URN =		{urn:nbn:de:0030-drops-111583},
  doi =		{10.4230/LIPIcs.ESA.2019.37},
  annote =	{Keywords: structural rounding, graph editing, approximation algorithms}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2017.79
Being Even Slightly Shallow Makes Life Hard

Authors: Irene Muzi, Michael P. O'Brien, Felix Reidl, and Blair D. Sullivan

Published in: LIPIcs, Volume 83, 42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017)

Abstract
We study the computational complexity of identifying dense substructures, namely r/2-shallow topological minors and r-subdivisions. Of particular interest is the case r = 1, when these substructures correspond to very localized relaxations of subgraphs. Since Densest Subgraph can be solved in polynomial time, we ask whether these slight relaxations also admit efficient algorithms. In the following, we provide a negative answer: Dense r/2-Shallow Topological Minor and Dense r-Subdivsion are already NP-hard for r = 1 in very sparse graphs. Further, they do not admit algorithms with running time 2^(o(tw^2)) n^O(1) when parameterized by the treewidth of the input graph for r > 2 unless ETH fails.
Cite as

Irene Muzi, Michael P. O'Brien, Felix Reidl, and Blair D. Sullivan. Being Even Slightly Shallow Makes Life Hard. In 42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 83, pp. 79:1-79:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{muzi_et_al:LIPIcs.MFCS.2017.79,
  author =	{Muzi, Irene and O'Brien, Michael P. and Reidl, Felix and Sullivan, Blair D.},
  title =	{{Being Even Slightly Shallow Makes Life Hard}},
  booktitle =	{42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017)},
  pages =	{79:1--79:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-046-0},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{83},
  editor =	{Larsen, Kim G. and Bodlaender, Hans L. and Raskin, Jean-Francois},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2017.79},
  URN =		{urn:nbn:de:0030-drops-81257},
  doi =		{10.4230/LIPIcs.MFCS.2017.79},
  annote =	{Keywords: Topological minors, NP Completeness, Treewidth, ETH, FPT algorithms}
}
Document
DOI: 10.4230/LIPIcs.IPEC.2016.28
A Fast Parameterized Algorithm for Co-Path Set

Authors: Blair D. Sullivan and Andrew van der Poel

Published in: LIPIcs, Volume 63, 11th International Symposium on Parameterized and Exact Computation (IPEC 2016)

Abstract
The k-CO-PATH SET problem asks, given a graph G and a positive integer k, whether one can delete k edges from G so that the remainder is a collection of disjoint paths. We give a linear-time, randomized fpt algorithm with complexity O^*(1.588^k) for deciding k-CO-PATH SET, significantly improving the previously best known O^*(2.17^k) of Feng, Zhou, and Wang (2015). Our main tool is a new O^*(4^{tw(G)}) algorithm for CO-PATH SET using the Cut&Count framework, where tw(G) denotes treewidth. In general graphs, we combine this with a branching algorithm which refines a 6k-kernel into reduced instances, which we prove have bounded treewidth.
Cite as

Blair D. Sullivan and Andrew van der Poel. A Fast Parameterized Algorithm for Co-Path Set. In 11th International Symposium on Parameterized and Exact Computation (IPEC 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 63, pp. 28:1-28:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{sullivan_et_al:LIPIcs.IPEC.2016.28,
  author =	{Sullivan, Blair D. and van der Poel, Andrew},
  title =	{{A Fast Parameterized Algorithm for Co-Path Set}},
  booktitle =	{11th International Symposium on Parameterized and Exact Computation (IPEC 2016)},
  pages =	{28:1--28:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-023-1},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{63},
  editor =	{Guo, Jiong and Hermelin, Danny},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2016.28},
  URN =		{urn:nbn:de:0030-drops-69371},
  doi =		{10.4230/LIPIcs.IPEC.2016.28},
  annote =	{Keywords: co-path set, parameterized complexity, Cut\&Count, bounded treewidth}
}
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