36 Search Results for "Todd, Michael J."


Document
Research
Native Provenance Computation for Federated and Non-Federated SPARQL Queries

Authors: Zubaria Asma, Daniel Hernández, Luis Galárraga, Giorgos Flouris, Irini Fundulaki, and Katja Hose

Published in: TGDK, Volume 4, Issue 1 (2026). Transactions on Graph Data and Knowledge, Volume 4, Issue 1


Abstract
The popularity of knowledge graphs (KGs) owes credit to their flexible data model, which is suitable for data integration from multiple sources. Several KG-based applications, such as trust assessment, view maintenance, or data valuation on dynamic data, rely on the ability to compute provenance explanations for query results. This need becomes more urgent in federated query processing systems, which allow the online consumption of heterogeneous and decentralized Web data. However, the problem of computing and interacting with provenance has received little attention, especially in the federated setting. On those grounds, this paper introduces the NPCS (Native Provenance Computation for SPARQL) approach, and its federated variant Fed-NPCS, that compute provenance for SPARQL query results. Both approaches build upon spm-semirings to annotate the results of monotonic and non-monotonic SPARQL queries with their provenance. Due to their reliance on query rewriting techniques, the approaches are directly applicable to already deployed SPARQL engines and federations using different reification schemes, including RDF-star. Our experimental evaluation shows that our novel query rewriting approach brings significant run-time improvements w.r.t. the state-of-the-art across both centralized and federated settings. In centralized settings, our tests on two popular SPARQL engines (GraphDB and Stardog) reveal substantial runtime gains over existing query rewriting solutions, enabling scalability to RDF graphs with billions of triples. In federated settings, our experiments on the FedShop benchmark with GraphDB show the viability of Fed-NPCS for federations with up to 200 sources.

Cite as

Zubaria Asma, Daniel Hernández, Luis Galárraga, Giorgos Flouris, Irini Fundulaki, and Katja Hose. Native Provenance Computation for Federated and Non-Federated SPARQL Queries. In Transactions on Graph Data and Knowledge (TGDK), Volume 4, Issue 1, pp. 4:1-4:43, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@Article{asma_et_al:TGDK.4.1.4,
  author =	{Asma, Zubaria and Hern\'{a}ndez, Daniel and Gal\'{a}rraga, Luis and Flouris, Giorgos and Fundulaki, Irini and Hose, Katja},
  title =	{{Native Provenance Computation for Federated and Non-Federated SPARQL Queries}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:43},
  ISSN =	{2942-7517},
  year =	{2026},
  volume =	{4},
  number =	{1},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.4.1.4},
  URN =		{urn:nbn:de:0030-drops-259642},
  doi =		{10.4230/TGDK.4.1.4},
  annote =	{Keywords: native provenance computation, federated SPARQL queries, data provenance, NPCS, Fed-NPCS}
}
Document
String Diagrams for Closed Symmetric Monoidal Categories

Authors: Callum Reader and Alessandro Di Giorgio

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)


Abstract
We introduce a graphical language for closed symmetric monoidal categories based on an extension of string diagrams with special bracket wires representing internal homs. These bracket wires make the structure of the internal hom functor explicit, allowing standard morphism wires to interact with them through a well-defined set of graphical rules. We establish the soundness and completeness of the diagrammatic calculus, and illustrate its expressiveness through examples drawn from category theory, logic and programming language semantics.

Cite as

Callum Reader and Alessandro Di Giorgio. String Diagrams for Closed Symmetric Monoidal Categories. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 12:1-12:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{reader_et_al:LIPIcs.CSL.2026.12,
  author =	{Reader, Callum and Di Giorgio, Alessandro},
  title =	{{String Diagrams for Closed Symmetric Monoidal Categories}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{12:1--12:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.12},
  URN =		{urn:nbn:de:0030-drops-254369},
  doi =		{10.4230/LIPIcs.CSL.2026.12},
  annote =	{Keywords: diagrammatic languages, logic, lambda calculi}
}
Document
Identity Testing for Circuits with Exponentiation Gates

Authors: Jiatu Li and Mengdi Wu

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)


Abstract
Motivated by practical applications in the design of optimization compilers for neural networks, we initiated the study of identity testing problems for arithmetic circuits augmented with exponentiation gates that compute the real function x↦ e^x. These circuits compute real functions of form P(→x)/P'(→x), where both P(→x) and P'(→x) are exponential polynomials ∑_{i = 1}^k f_i(→x)⋅ exp((g_i(→x))/(h_i(→x))), for polynomials f_i(→x),g_i(→x), and h_i(→x). We formalize a black-box query model over finite fields for this class of circuits, which is mathematical simple and reflects constraints faced by real-world neural network compilers. We proved that a simple and efficient randomized identity testing algorithm achieves perfect completeness and non-trivial soundness. Concurrent with our work, the algorithm has been implemented in the optimization compiler Mirage by Wu et al. (OSDI 2025), demonstrating promising empirical performance in both efficiency and soundness error. Finally, we propose a number-theoretic conjecture under which our algorithm is sound with high probability.

Cite as

Jiatu Li and Mengdi Wu. Identity Testing for Circuits with Exponentiation Gates. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 95:1-95:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@InProceedings{li_et_al:LIPIcs.ITCS.2026.95,
  author =	{Li, Jiatu and Wu, Mengdi},
  title =	{{Identity Testing for Circuits with Exponentiation Gates}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{95:1--95:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.95},
  URN =		{urn:nbn:de:0030-drops-253821},
  doi =		{10.4230/LIPIcs.ITCS.2026.95},
  annote =	{Keywords: Polynomial Identity Testing, Exponential Polynomials}
}
Document
Integrating Multi-Level Mixed-Criticality into MCTS for Robust Resource Management

Authors: Franco Cordeiro, Samuel Tardieu, and Laurent Pautet

Published in: LITES, Volume 10, Issue 2 (2025): Special Issue on Industrial Real-Time Systems. Leibniz Transactions on Embedded Systems, Volume 10, Issue 2


Abstract
Managing actions with uncertain resource costs is a complex challenge, particularly in autonomous robot mission planning. Robots are often assigned multiple objectives with varying criticality levels, ranging from catastrophic to minor impacts, where failures can significantly affect system safety. Uncertainties in worst-case costs of resources, such as energy and operating time - the time it takes to carry out an action - further complicate mission planning and execution. Monte Carlo Tree Search (MCTS) is a powerful tool for online planning, yet it struggles to account for uncertainty in worst-case cost estimations. Optimistic estimates risk resource shortages, while pessimistic ones lead to inefficient allocation. The Mixed-Criticality (MC) approach, originally developed for real-time systems to schedule critical tasks by allocating processing resources under Worst-Case Execution Time (WCET) uncertainty, provides a framework of rules, models and design principles. We claim this framework can be adapted to autonomous robot mission planning, where critical objectives are met through analogous allocation of different kinds of resources such as energy and operating time despite uncertainties. We propose enhancing MCTS with MC principles to handle uncertainty in worst-case costs across multiple resources and criticality of objectives. High-critical objectives must always be completed, regardless of resource constraints, while low-critical objectives operate flexibly, consuming resources within optimistic estimates when possible or being discarded when resources become scarce. This ensures efficient resource reallocation and prioritization of high-critical objectives. To implement this, we present (MC)²TS, a novel variant of MCTS that integrates MC principles for dynamic resource management. It supports more than two criticality levels to ensure that the most critical components meet the most stringent safety and reliability requirements, while also enabling robust resource management. By enabling replanning and mode changes, (MC)²TS improves MCTS’s efficiency and enhances MC systems’ adaptability to both degrading and improving resource conditions. We evaluate (MC)²TS in an active perception scenario, where a drone retrieves data from distributed sensors under unpredictable environmental conditions. (MC)²TS outperforms MCTS by achieving more objectives, adapting plans when costs drop. It explores more objective sequences, minimizes oversizing, and enhances efficiency. Balancing safety and performance, it monitors robot battery, mission and objective resource constraints such as deadlines. Its robustness ensures low-critical objectives do not compromise high-critical objectives, making it a reliable solution for complex systems characterized by uncertain resource costs and critical objectives.

Cite as

Franco Cordeiro, Samuel Tardieu, and Laurent Pautet. Integrating Multi-Level Mixed-Criticality into MCTS for Robust Resource Management. In LITES, Volume 10, Issue 2 (2025): Special Issue on Industrial Real-Time Systems. Leibniz Transactions on Embedded Systems, Volume 10, Issue 2, pp. 1:1-1:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@Article{cordeiro_et_al:LITES.10.2.1,
  author =	{Cordeiro, Franco and Tardieu, Samuel and Pautet, Laurent},
  title =	{{Integrating Multi-Level Mixed-Criticality into MCTS for Robust Resource Management}},
  journal =	{Leibniz Transactions on Embedded Systems},
  pages =	{1:1--1:23},
  ISSN =	{2199-2002},
  year =	{2025},
  volume =	{10},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LITES.10.2.1},
  URN =		{urn:nbn:de:0030-drops-252339},
  doi =		{10.4230/LITES.10.2.1},
  annote =	{Keywords: Embedded Systems, Safety / Mixed-Critical Systems, Real-Time Systems, Energy Aware Systems}
}
Document
Invited Paper
Modern Datalog: Concepts, Methods, Applications (Invited Paper)

Authors: Markus Krötzsch

Published in: OASIcs, Volume 138, Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025)


Abstract
Pure Datalog is arguably the most fundamental rule language, elegant and simple, but also often too limited to be useful in practice. This has motivated the introduction of many new expressive features, ranging from datatypes and related functions, over aggregates and semi-ring generalisations, to existential quantifiers and complex terms. In spite of their variety, all these approaches remain true to the nature of Datalog as a direct, pattern-based way of computing on structured data. We therefore find that a modern notion of Datalog is emerging, distinctly different from other approaches of logic programming and with its own set of related methods and applications. In this course, we introduce Datalog and its most common extensions, and explain when and how these features can be used together (which is often, but not always, safe to do). We further look at modern Datalog systems and some of their primary use cases. Hands-on work with Datalog and its extensions is done with the free Datalog engine https://knowsys.github.io/nemo-doc/. The course is accessible to all audiences and does not assume specific prior knowledge.

Cite as

Markus Krötzsch. Modern Datalog: Concepts, Methods, Applications (Invited Paper). In Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 & RW 2025). Open Access Series in Informatics (OASIcs), Volume 138, pp. 7:1-7:41, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{krotzsch:OASIcs.RW.2024/2025.7,
  author =	{Kr\"{o}tzsch, Markus},
  title =	{{Modern Datalog: Concepts, Methods, Applications}},
  booktitle =	{Joint Proceedings of the 20th and 21st Reasoning Web Summer Schools (RW 2024 \& RW 2025)},
  pages =	{7:1--7:41},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-405-5},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{138},
  editor =	{Artale, Alessandro and Bienvenu, Meghyn and Garc{\'\i}a, Yazm{\'\i}n Ib\'{a}\~{n}ez and Murlak, Filip},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.RW.2024/2025.7},
  URN =		{urn:nbn:de:0030-drops-250524},
  doi =		{10.4230/OASIcs.RW.2024/2025.7},
  annote =	{Keywords: Datalog, query language, knowlegde representation and reasoning, logic programming, Horn logic, SPARQL, datatypes and aggregation, lecture notes, tutorial}
}
Document
PhD Panel
Unsupervised Multimodal Learning for Fault Diagnosis and Prognosis - Application to Radiotherapy Systems (PhD Panel)

Authors: Kélian Poujade, Louise Travé-Massuyès, Jérémy Pirard, and Laure Vieillevigne

Published in: OASIcs, Volume 136, 36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025)


Abstract
Modern complex systems, such as radiotherapy machines, require robust strategies for fault detection, diagnosis, and prognosis to ensure operational continuity and patient safety. While data-driven methods have gained traction, few studies address diagnostic and prognostic tasks using multimodal operational data under unsupervised or semi-supervised learning settings. This gap is particularly critical given the scarcity of labeled failure data in real-world environments. This work aims to design a unified approach for fault detection, diagnosis, and prognosis using multimodal data in the absence of complete labeling. To this end, autoencoders (AEs) are employed due to their suitability for unsupervised and self-supervised learning, flexibility in handling heterogeneous data, and ability to construct latent representations optimized for various downstream tasks. A specific implementation based on a Long Short-Term Memory β-Variational Autoencoder (LSTM-β-VAE) was developed to detect anomalies in machine logs. This framework is applied to TomoTherapy® systems - a highly complex and under-explored use case within the radiotherapy domain. Initial results demonstrate strong anomaly detection performance on both a public benchmark dataset (HDFS) and a proprietary dataset derived from real-world TomoTherapy® machine faults. Beyond methodology, the paper includes a concise literature review of multimodal learning and data-driven diagnosis and prognosis with a focus on AEs. Based on this review, key research directions are identified for the continuation of the thesis, especially the integration of explainable AI as a means to enhance diagnosis capabilities in the absence of labeled faults.

Cite as

Kélian Poujade, Louise Travé-Massuyès, Jérémy Pirard, and Laure Vieillevigne. Unsupervised Multimodal Learning for Fault Diagnosis and Prognosis - Application to Radiotherapy Systems (PhD Panel). In 36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025). Open Access Series in Informatics (OASIcs), Volume 136, pp. 16:1-16:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{poujade_et_al:OASIcs.DX.2025.16,
  author =	{Poujade, K\'{e}lian and Trav\'{e}-Massuy\`{e}s, Louise and Pirard, J\'{e}r\'{e}my and Vieillevigne, Laure},
  title =	{{Unsupervised Multimodal Learning for Fault Diagnosis and Prognosis - Application to Radiotherapy Systems}},
  booktitle =	{36th International Conference on Principles of Diagnosis and Resilient Systems (DX 2025)},
  pages =	{16:1--16:17},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-394-2},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{136},
  editor =	{Quinones-Grueiro, Marcos and Biswas, Gautam and Pill, Ingo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.DX.2025.16},
  URN =		{urn:nbn:de:0030-drops-248058},
  doi =		{10.4230/OASIcs.DX.2025.16},
  annote =	{Keywords: Artificial Intelligence, Diagnosis, Prognosis, Radiotherapy machines}
}
Document
Kudzu: Fast and Simple High-Throughput BFT

Authors: Victor Shoup, Jakub Sliwinski, and Yann Vonlanthen

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)


Abstract
We present Kudzu, a high-throughput atomic broadcast protocol with an integrated fast path. Our contribution is based on the combination of two lines of work. Firstly, our protocol achieves finality in just two rounds of communication if all but p out of n = 3f + 2p + 1 participating replicas behave correctly, where f is the number of Byzantine faults that are tolerated. Due to the seamless integration of the fast path, even in the presence of more than p faults, our protocol maintains state-of-the-art characteristics. Secondly, our protocol utilizes the bandwidth of participating replicas in a balanced way, alleviating the bottleneck at the leader, and thus enabling high throughput. This is achieved by disseminating blocks using erasure codes. Despite combining a novel set of advantages, Kudzu is remarkably simple: intricacies such as "progress certificates", complex view changes, and speculative execution are avoided.

Cite as

Victor Shoup, Jakub Sliwinski, and Yann Vonlanthen. Kudzu: Fast and Simple High-Throughput BFT. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 42:1-42:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{shoup_et_al:LIPIcs.DISC.2025.42,
  author =	{Shoup, Victor and Sliwinski, Jakub and Vonlanthen, Yann},
  title =	{{Kudzu: Fast and Simple High-Throughput BFT}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{42:1--42:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.42},
  URN =		{urn:nbn:de:0030-drops-248597},
  doi =		{10.4230/LIPIcs.DISC.2025.42},
  annote =	{Keywords: Consensus, Blockchain, Byzantine Fault Tolerance, Fast Path, State Machine Replication}
}
Document
From Permissioned to Proof-of-Stake Consensus

Authors: Jovan Komatovic, Andrew Lewis-Pye, Joachim Neu, Tim Roughgarden, and Ertem Nusret Tas

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)


Abstract
This paper presents the first generic compiler that transforms any permissioned consensus protocol into a proof-of-stake permissionless consensus protocol. For each of the following properties, if the initial permissioned protocol satisfies that property in the partially synchronous setting, the consequent proof-of-stake protocol also satisfies that property in the partially synchronous and quasi-permissionless setting (with the same fault-tolerance): consistency; liveness; optimistic responsiveness; every composable log-specific property; and message complexity of a given order. Moreover, our transformation ensures that the output protocol satisfies accountability (identifying culprits in the event of a consistency violation), whether or not the original permissioned protocol satisfied it.

Cite as

Jovan Komatovic, Andrew Lewis-Pye, Joachim Neu, Tim Roughgarden, and Ertem Nusret Tas. From Permissioned to Proof-of-Stake Consensus. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 18:1-18:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{komatovic_et_al:LIPIcs.AFT.2025.18,
  author =	{Komatovic, Jovan and Lewis-Pye, Andrew and Neu, Joachim and Roughgarden, Tim and Tas, Ertem Nusret},
  title =	{{From Permissioned to Proof-of-Stake Consensus}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{18:1--18:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.18},
  URN =		{urn:nbn:de:0030-drops-247373},
  doi =		{10.4230/LIPIcs.AFT.2025.18},
  annote =	{Keywords: Permissioned Consensus, Proof-of-Stake, generic Compiler, Blockchain}
}
Document
Trustless Bridges via Random Sampling Light Clients

Authors: Bhargav Nagaraja Bhatt, Fatemeh Shirazi, and Alistair Stewart

Published in: LIPIcs, Volume 354, 7th Conference on Advances in Financial Technologies (AFT 2025)


Abstract
The increasing number of blockchain projects introduced annually has led to a pressing need for secure and efficient interoperability solutions. Currently, the lack of such solutions forces end-users to rely on centralized intermediaries, contradicting the core principle of decentralization and trust minimization in blockchain technology. We propose a decentralized and efficient interoperability solution (aka Bridge Protocol) that operates without additional trust assumptions, relying solely on the Byzantine Fault Tolerance (BFT) properties of the two chains being connected. In particular, relayers (actors that exchange messages between networks) are permissionless and decentralized, hence eliminating any single point of failure. We introduce Random Sampling, a novel technique for on-chain light clients to efficiently follow the history of PoS blockchains by reducing the signature verifications required. Here, the randomness is drawn on-chain, for example, using Ethereum’s RANDAO. We analyze the security of the bridge from a crypto- economic perspective and provide a framework to derive the security parameters. This includes handling subtle concurrency issues and randomness bias in strawman designs. While the protocol is applicable to various PoS chains, we demonstrate the protocol’s practical feasibility by showcasing an instantiated bridge between Polkadot and Ethereum (currently deployed), and discuss some practical security challenges. Furthermore, we evaluate the efficiency of our on-chain light client verifier (implemented as an Ethereum smart contract) against SNARK-based approaches, demonstrating significantly lower gas costs for signature verification - even for validator sets up to 10⁶.

Cite as

Bhargav Nagaraja Bhatt, Fatemeh Shirazi, and Alistair Stewart. Trustless Bridges via Random Sampling Light Clients. In 7th Conference on Advances in Financial Technologies (AFT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 354, pp. 31:1-31:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{bhatt_et_al:LIPIcs.AFT.2025.31,
  author =	{Bhatt, Bhargav Nagaraja and Shirazi, Fatemeh and Stewart, Alistair},
  title =	{{Trustless Bridges via Random Sampling Light Clients}},
  booktitle =	{7th Conference on Advances in Financial Technologies (AFT 2025)},
  pages =	{31:1--31:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-400-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{354},
  editor =	{Avarikioti, Zeta and Christin, Nicolas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AFT.2025.31},
  URN =		{urn:nbn:de:0030-drops-247503},
  doi =		{10.4230/LIPIcs.AFT.2025.31},
  annote =	{Keywords: PoS Blockchains, Trustless Bridges, Light Clients, Decentralised Relayers, RANDAO Bias}
}
Document
Verifying Datalog Reasoning with Lean

Authors: Johannes Tantow, Lukas Gerlach, Stephan Mennicke, and Markus Krötzsch

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)


Abstract
Datalog is an essential logical rule language with many applications, and modern rule engines compute logical consequences for Datalog with high performance and scalability. While Datalog is rather simple and, in principle, explainable by design, such sophisticated implementations and optimizations are hard to verify. We therefore propose a certificate-based approach to validate results of Datalog reasoners in a formally verified checker for Datalog proofs. Using the proof assistant Lean, we implement such a checker and verify its correctness against direct formalizations of the Datalog semantics. We propose two JSON encodings for Datalog proofs: one using the widely supported Datalog proof trees, and one using directed acyclic graphs for succinctness. To evaluate the practical feasibility and performance of our approach, we validate proofs that we obtain by converting derivation traces of an existing Datalog reasoner into our tool-independent format.

Cite as

Johannes Tantow, Lukas Gerlach, Stephan Mennicke, and Markus Krötzsch. Verifying Datalog Reasoning with Lean. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 36:1-36:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{tantow_et_al:LIPIcs.ITP.2025.36,
  author =	{Tantow, Johannes and Gerlach, Lukas and Mennicke, Stephan and Kr\"{o}tzsch, Markus},
  title =	{{Verifying Datalog Reasoning with Lean}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{36:1--36:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.36},
  URN =		{urn:nbn:de:0030-drops-246342},
  doi =		{10.4230/LIPIcs.ITP.2025.36},
  annote =	{Keywords: Certifying Algorithms, Datalog, Formal Verification}
}
Document
Virtual Reality Prototyping Environment for Concurrent Design, Training and Rover Operations

Authors: Pinar Dogru, Hanjo Schnellbächer, Tarek Can Battikh, and Kristina Remić

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)


Abstract
As part of the CASIMAR (Collaborative Astronaut Supporting Interregional Moon Analog Rover) project, initiated by the BVSR e.V. (Bundesverband Studentischer Raumfahrt), the TUDSaT (TU Darmstadt Space Technology e.V.) team is developing a Virtual Reality (VR) prototype environment to support the interdisciplinary design process of lunar exploration technologies. Given the complexity of collaboration among eight organizations, this tool aims to streamline design integration and enhance mission planning. The primary objective is to create a comprehensive 3D model of the rover, complete with predefined procedures and activities, to simulate astronaut-robot interaction. By leveraging VR technology, astronauts can familiarize themselves with the rover and its EVA (Extravehicular Activity) tools before actual deployment, improving operational safety and efficiency. Beyond training applications, this virtual environment serves as a critical platform for designing, testing, and benchmarking rover functionalities and EVA procedures. Ultimately, our work contributes to optimizing human-robotic interaction, ensuring that lunar exploration missions are both effective and well-prepared before reaching the Moon.

Cite as

Pinar Dogru, Hanjo Schnellbächer, Tarek Can Battikh, and Kristina Remić. Virtual Reality Prototyping Environment for Concurrent Design, Training and Rover Operations. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 32:1-32:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{dogru_et_al:OASIcs.SpaceCHI.2025.32,
  author =	{Dogru, Pinar and Schnellb\"{a}cher, Hanjo and Battikh, Tarek Can and Remi\'{c}, Kristina},
  title =	{{Virtual Reality Prototyping Environment for Concurrent Design, Training and Rover Operations}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{32:1--32:13},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.32},
  URN =		{urn:nbn:de:0030-drops-240226},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.32},
  annote =	{Keywords: virtual reality (VR), digital twin, human-robot-interaction (HRI), LUNA analog facility, rover, extravehicular activities (EVA), gamification, simulation, user-centered design (UCD), concurrent engineering (CE), space system engineering}
}
Document
The Pyttern Program Query Language

Authors: Julien Liénard, Kim Mens, and Siegfried Nijssen

Published in: OASIcs, Volume 134, Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)


Abstract
Despite the availability of numerous tools and languages for detecting structural patterns in programs, their complexity often presents a steep learning curve. This highlights the need for a program query language that is easier to learn, use, and read while remaining sufficiently expressive for defining and detecting relevant structural coding patterns in program code. To address this challenge, we present Pyttern, a query language that extends Python syntax with regular-expression-inspired wildcards, enabling intuitive pattern-based querying of Python code. Its implementation relies upon a custom pushdown automaton describing how to match patterns over program parse trees, thus providing a robust foundation for structural code analysis. We evaluate Pyttern’s usability and effectiveness through a study involving 35 master’s students, who were asked to write seven different patterns to identify known programming misconceptions. The results demonstrate that Pyttern is both easy to learn and practical to use, at least for analysing small-scale programs.

Cite as

Julien Liénard, Kim Mens, and Siegfried Nijssen. The Pyttern Program Query Language. In Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025). Open Access Series in Informatics (OASIcs), Volume 134, pp. 23:1-23:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{lienard_et_al:OASIcs.Programming.2025.23,
  author =	{Li\'{e}nard, Julien and Mens, Kim and Nijssen, Siegfried},
  title =	{{The Pyttern Program Query Language}},
  booktitle =	{Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)},
  pages =	{23:1--23:15},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-382-9},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{134},
  editor =	{Edwards, Jonathan and Perera, Roly and Petricek, Tomas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Programming.2025.23},
  URN =		{urn:nbn:de:0030-drops-243075},
  doi =		{10.4230/OASIcs.Programming.2025.23},
  annote =	{Keywords: Pyttern, Program Query Languages, Python, Pattern Matching, Parse Tree, Pushdown Automaton, Static Code Analysis, Wildcards, Tree Pattern Matching}
}
Document
Broadcasting Under Structural Restrictions

Authors: Yudai Egami, Tatsuya Gima, Tesshu Hanaka, Yasuaki Kobayashi, Michael Lampis, Valia Mitsou, Edouard Nemery, Yota Otachi, Manolis Vasilakis, and Daniel Vaz

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)


Abstract
In the Telephone Broadcast problem we are given a graph G = (V,E) with a designated source vertex s ∈ V. Our goal is to transmit a message, which is initially known only to s, to all vertices of the graph by using a process where in each round an informed vertex may transmit the message to one of its uninformed neighbors. The optimization objective is to minimize the number of rounds. Following up on several recent works, we investigate the structurally parameterized complexity of Telephone Broadcast. In particular, we first strengthen existing NP-hardness results by showing that the problem remains NP-complete on graphs of bounded tree-depth and also on cactus graphs which are one vertex deletion away from being path forests. Motivated by this (severe) hardness, we study several other parameterizations of the problem and obtain FPT algorithms parameterized by vertex integrity (generalizing a recent FPT algorithm parameterized by vertex cover by Fomin, Fraigniaud, and Golovach [TCS 2024]) and by distance to clique, as well as FPT approximation algorithms parameterized by clique-cover and cluster vertex deletion. Furthermore, we obtain structural results that relate the length of the optimal broadcast protocol of a graph G with its pathwidth and tree-depth. By presenting a substantial improvement over the best previously known bound for pathwidth (Aminian, Kamali, Seyed-Javadi, and Sumedha [ICALP 2025]) we exponentially improve the approximation ratio achievable in polynomial time on graphs of bounded pathwidth from 𝒪(4^pw) to 𝒪(pw).

Cite as

Yudai Egami, Tatsuya Gima, Tesshu Hanaka, Yasuaki Kobayashi, Michael Lampis, Valia Mitsou, Edouard Nemery, Yota Otachi, Manolis Vasilakis, and Daniel Vaz. Broadcasting Under Structural Restrictions. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 42:1-42:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{egami_et_al:LIPIcs.MFCS.2025.42,
  author =	{Egami, Yudai and Gima, Tatsuya and Hanaka, Tesshu and Kobayashi, Yasuaki and Lampis, Michael and Mitsou, Valia and Nemery, Edouard and Otachi, Yota and Vasilakis, Manolis and Vaz, Daniel},
  title =	{{Broadcasting Under Structural Restrictions}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{42:1--42:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.42},
  URN =		{urn:nbn:de:0030-drops-241492},
  doi =		{10.4230/LIPIcs.MFCS.2025.42},
  annote =	{Keywords: Parameterized Complexity, Structural Graph Parameters, Telephone Broadcast}
}
Document
A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences

Authors: Haonan Wu, Antonio Blanca, and Paul Medvedev

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)


Abstract
K-mer-based analysis of genomic data is ubiquitous, but the presence of repetitive k-mers continues to pose problems for the accuracy of many methods. For example, the Mash tool (Ondov et al. 2016) can accurately estimate the substitution rate between two low-repetitive sequences from their k-mer sketches; however, it is inaccurate on repetitive sequences such as the centromere of a human chromosome. Follow-up work by Blanca et al. (2021) has attempted to model how mutations affect k-mer sets based on strong assumptions that the sequence is non-repetitive and that mutations do not create spurious k-mer matches. However, the theoretical foundations for extending an estimator like Mash to work in the presence of repeat sequences have been lacking. In this work, we relax the non-repetitive assumption and propose a novel estimator for the mutation rate. We derive theoretical bounds on our estimator’s bias. Our experiments show that it remains accurate for repetitive genomic sequences, such as the alpha satellite higher order repeats in centromeres. We demonstrate our estimator’s robustness across diverse datasets and various ranges of the substitution rate and k-mer size. Finally, we show how sketching can be used to avoid dealing with large k-mer sets while retaining accuracy. Our software is available at https://github.com/medvedevgroup/Repeat-Aware_Substitution_Rate_Estimator.

Cite as

Haonan Wu, Antonio Blanca, and Paul Medvedev. A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 20:1-20:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{wu_et_al:LIPIcs.WABI.2025.20,
  author =	{Wu, Haonan and Blanca, Antonio and Medvedev, Paul},
  title =	{{A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{20:1--20:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.20},
  URN =		{urn:nbn:de:0030-drops-239465},
  doi =		{10.4230/LIPIcs.WABI.2025.20},
  annote =	{Keywords: k-mers, sketching, mutation rates}
}
Document
Sequence Similarity Estimation by Random Subsequence Sketching

Authors: Ke Chen, Vinamratha Pattar, and Mingfu Shao

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)


Abstract
Sequence similarity estimation is essential for many bioinformatics tasks, including functional annotation, phylogenetic analysis, and overlap graph construction. Alignment-free methods aim to solve large-scale sequence similarity estimation by mapping sequences to more easily comparable features that can approximate edit distances efficiently. Substrings or k-mers, as the dominant choice of features, face an unavoidable compromise between sensitivity and specificity when selecting the proper k-value. Recently, subsequence-based features have shown improved performance, but they are computationally demanding, and determining the ideal subsequence length remains an intricate art. In this work, we introduce SubseqSketch, a novel alignment-free scheme that maps a sequence to an integer vector, where the entries correspond to dynamic, rather than fixed, lengths of random subsequences. The cosine similarity between these vectors exhibits a strong correlation with the edit similarity between the original sequences. Through experiments on benchmark datasets, we demonstrate that SubseqSketch is both efficient and effective across various alignment-free tasks, including nearest neighbor search and phylogenetic clustering. A C++ implementation of SubseqSketch is openly available at https://github.com/Shao-Group/SubseqSketch.

Cite as

Ke Chen, Vinamratha Pattar, and Mingfu Shao. Sequence Similarity Estimation by Random Subsequence Sketching. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 7:1-7:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)


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@InProceedings{chen_et_al:LIPIcs.WABI.2025.7,
  author =	{Chen, Ke and Pattar, Vinamratha and Shao, Mingfu},
  title =	{{Sequence Similarity Estimation by Random Subsequence Sketching}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{7:1--7:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.7},
  URN =		{urn:nbn:de:0030-drops-239332},
  doi =		{10.4230/LIPIcs.WABI.2025.7},
  annote =	{Keywords: Alignment-free sequence comparison, Phylogenetic clustering, Nearest neighbor search, Edit distance embedding}
}
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