18 Search Results for "Walter, Tobias"

Document
DOI: 10.4230/LIPIcs.SEA.2026.17
Adaptive Subproblem Selection in Benders Decomposition for Survivable Network Design Problems

Authors: Tim Donkiewicz

Published in: LIPIcs, Volume 371, 24th International Symposium on Experimental Algorithms (SEA 2026)

Abstract
Scenario-based optimization problems can be solved via Benders decomposition, which separates first-stage (master problem) decisions from second-stage (subproblem) recourse actions and iteratively refines the master problem with Benders cuts. In conventional Benders decomposition, all subproblems are solved at each iteration. For problems with many scenarios, solving only a selected subset can reduce computation. We quantify the potential in selecting only those subproblems that yield cuts, and develop subproblem scoring and selection strategies. The proposed multi-criteria scoring methods combine historical subproblem performance metrics with problem-specific features, trained online via logistic regression to adapt to the changing likelihood of subproblem usefulness. Multiple stopping criteria balance exploration and exploitation: cut limits, proportional solve limits, and score thresholds. We evaluate our approach on a variant of the survivable network design problem, which serves as a testbed due to its natural decomposition into many subproblems of varying importance. Computational experiments on 135 test instances demonstrate the potential and practical performance of subproblem selection. Analysis reveals that 52.1% of all subproblems solved are unnecessary (they contribute no cuts and occur outside cut-free rounds). An oracle with perfect foresight reduces total solve times by 34.4%. Random selection performs significantly worse than full enumeration, showing that naive strategies can degrade performance. Our best-scoring and selection method achieves statistically significant improvements in both runtime and primal-dual integrals. These results provide empirical evidence that informed subproblem selection can improve Benders decomposition in this setting, while highlighting challenges in developing reliable prediction models. Whether these findings extend to other problem classes remains an open question for future work.
Cite as

Tim Donkiewicz. Adaptive Subproblem Selection in Benders Decomposition for Survivable Network Design Problems. In 24th International Symposium on Experimental Algorithms (SEA 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 371, pp. 17:1-17:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{donkiewicz:LIPIcs.SEA.2026.17,
  author =	{Donkiewicz, Tim},
  title =	{{Adaptive Subproblem Selection in Benders Decomposition for Survivable Network Design Problems}},
  booktitle =	{24th International Symposium on Experimental Algorithms (SEA 2026)},
  pages =	{17:1--17:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-422-2},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{371},
  editor =	{Aum\"{u}ller, Martin and Finocchi, Irene},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2026.17},
  URN =		{urn:nbn:de:0030-drops-260219},
  doi =		{10.4230/LIPIcs.SEA.2026.17},
  annote =	{Keywords: Integer programming, Benders decomposition, subproblem selection, survivable network design, machine learning, operations research}
}
Document
DOI: 10.4230/LIPIcs.SWAT.2026.22
Search-Space Reduction for Boolean MinCSPs via Essential Constraints

Authors: Bart M. P. Jansen and Ruben F. A. Verhaegh

Published in: LIPIcs, Volume 370, 20th Scandinavian Symposium on Algorithm Theory (SWAT 2026)

Abstract
For a fixed set ℱ of Boolean constraint types, a MinCSP(ℱ)-instance consists of a formula F that applies m constraints from ℱ to a set of n Boolean variables. The goal is to remove a minimum subset of constraint applications from F to make the remaining formula satisfiable. Previous work characterized how the choice of ℱ affects its polynomial-time solvability and approximability. We extend a recently introduced preprocessing framework for graph problems to the problem above. Rephrased in the context of CSPs, this framework defines a constraint application from a given formula F as c-essential if it is contained in all c-approximate solutions to F. Being able to efficiently detect these essential parts of a solution reduces the search space of any follow-up FPT algorithms parameterized by the solution size and yields an immediate asymptotic improvement to the runtime of such algorithms. In this work, we present a dichotomy theorem that distinguishes constraint sets ℱ for which c_ℱ-essential constraint applications can be detected efficiently for some c_{ℱ} ∈ 𝒪(1), from those for which this task is intractable under established complexity-theoretic conjectures. Our results show that for any set ℱ of bijunctive constraints, there is a polynomial-time algorithm that detects 𝒪(1)-essential constraint applications. This contrasts the fact that constant-factor approximating a bijunctive MinCSP(ℱ)-problem is intractable under the Unique Games Conjecture.
Cite as

Bart M. P. Jansen and Ruben F. A. Verhaegh. Search-Space Reduction for Boolean MinCSPs via Essential Constraints. In 20th Scandinavian Symposium on Algorithm Theory (SWAT 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 370, pp. 22:1-22:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{jansen_et_al:LIPIcs.SWAT.2026.22,
  author =	{Jansen, Bart M. P. and Verhaegh, Ruben F. A.},
  title =	{{Search-Space Reduction for Boolean MinCSPs via Essential Constraints}},
  booktitle =	{20th Scandinavian Symposium on Algorithm Theory (SWAT 2026)},
  pages =	{22:1--22:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-421-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{370},
  editor =	{Fraigniaud, Pierre},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2026.22},
  URN =		{urn:nbn:de:0030-drops-260586},
  doi =		{10.4230/LIPIcs.SWAT.2026.22},
  annote =	{Keywords: fixed-parameter tractability, constraint satisfaction problems}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2026.64
Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree

Authors: Sándor Kisfaludi-Bak, Saeed Odak, Satyam Singh, and Geert van Wordragen

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
We give an approximation scheme for the TSP in d-dimensional hyperbolic space that has optimal dependence on ε under Gap-ETH. For any fixed dimension d ≥ 2 and for any ε > 0 our randomized algorithm gives a (1+ε)-approximation in time 2^O(1/ε^{d-1}) n^{1+o(1)}. We also provide an algorithm for the hyperbolic Steiner tree problem with the same running time. Our algorithm is an Arora-style dynamic program based on a randomly shifted hierarchical decomposition. However, we introduce a new hierarchical decomposition called the hybrid hyperbolic quadtree to achieve the desired large-scale structure, which deviates significantly from the recently proposed hyperbolic quadtree of Kisfaludi-Bak and Van Wordragen (JoCG'25). Moreover, we have a new non-uniform portal placement, and our structure theorem employs a new weighted crossing analysis. We believe that these techniques could form the basis for further developments in geometric optimization in curved spaces.
Cite as

Sándor Kisfaludi-Bak, Saeed Odak, Satyam Singh, and Geert van Wordragen. Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 64:1-64:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{kisfaludibak_et_al:LIPIcs.SoCG.2026.64,
  author =	{Kisfaludi-Bak, S\'{a}ndor and Odak, Saeed and Singh, Satyam and van Wordragen, Geert},
  title =	{{Gap-ETH-Tight Algorithms for Hyperbolic TSP and Steiner Tree}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{64:1--64:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.64},
  URN =		{urn:nbn:de:0030-drops-258710},
  doi =		{10.4230/LIPIcs.SoCG.2026.64},
  annote =	{Keywords: Hyperbolic traveling salesman problem, TSP, Hyperbolic Steiner tree problem, Approximation scheme, Banyan, Hyperbolic geometry}
}
Document
Research
DOI: 10.4230/TGDK.3.3.4
Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web

Authors: Florian Ruosch, Cristina Sarasua, and Abraham Bernstein

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
In Argument Mining, predicting argumentative relations between texts (or spans) remains one of the most challenging aspects, even more so in the cross-document setting. This paper makes three key contributions to advance research in this domain. We first extend an existing dataset, the Sci-Arg corpus, by annotating it with explicit inter-document argumentative relations, thereby allowing arguments to be distributed over several documents forming an Argument Web; these new annotations are published using Semantic Web technologies (RDF, OWL). Second, we explore and evaluate three automated approaches for predicting these inter-document argumentative relations, establishing critical baselines on the new dataset. We find that a simple classifier based on discourse indicators with access to context outperforms neural methods. Third, we conduct a comparative analysis of these approaches for both intra- and inter-document settings, identifying statistically significant differences in results that indicate the necessity of distinguishing between these two scenarios. Our findings highlight significant challenges in this complex domain and open crucial avenues for future research on the Argument Web of Science, particularly for those interested in leveraging Semantic Web technologies and knowledge graphs to understand scholarly discourse. With this, we provide the first stepping stones in the form of a benchmark dataset, three baseline methods, and an initial analysis for a systematic exploration of this field relevant to the Web of Data and Science.
Cite as

Florian Ruosch, Cristina Sarasua, and Abraham Bernstein. Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 4:1-4:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ruosch_et_al:TGDK.3.3.4,
  author =	{Ruosch, Florian and Sarasua, Cristina and Bernstein, Abraham},
  title =	{{Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:33},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.4},
  URN =		{urn:nbn:de:0030-drops-252159},
  doi =		{10.4230/TGDK.3.3.4},
  annote =	{Keywords: Argument Mining, Large Language Models, Knowledge Graphs, Link Prediction}
}
Document
DOI: 10.4230/LIPIcs.DISC.2025.10
Amnesiac Flooding: Easy to Break, Hard to Escape

Authors: Henry Austin, Maximilien Gadouleau, George B. Mertzios, and Amitabh Trehan

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)

Abstract
Broadcast is a central problem in distributed computing. Recently, Hussak and Trehan [PODC'19/ STACS'20/DC'23] proposed a stateless broadcasting protocol (Amnesiac Flooding), which was surprisingly proven to terminate in asymptotically optimal time (linear in the diameter of the network). However, it remains unclear: (i) Are there other stateless terminating broadcast algorithms with the desirable properties of Amnesiac Flooding, (ii) How robust is Amnesiac Flooding with respect to faults? In this paper we make progress on both of these fronts. Under a reasonable restriction (obliviousness to message content) additional to the fault-free synchronous model, we prove that Amnesiac Flooding is the only strictly stateless deterministic protocol that can achieve terminating broadcast. We achieve this by identifying four natural properties of a terminating broadcast protocol that Amnesiac Flooding uniquely satisfies. In contrast, we prove that even minor relaxations of any of these four criteria allow the construction of other terminating broadcast protocols. On the other hand, we prove that Amnesiac Flooding can become non-terminating or non-broadcasting, even if we allow just one node to drop a single message on a single edge in a single round. As a tool for proving this, we focus on the set of all configurations of transmissions between nodes in the network, and obtain a dichotomy characterizing the configurations, starting from which, Amnesiac Flooding terminates. Additionally, we characterise the structure of sets of Byzantine agents capable of forcing non-termination or non-broadcast of the protocol on arbitrary networks.
Cite as

Henry Austin, Maximilien Gadouleau, George B. Mertzios, and Amitabh Trehan. Amnesiac Flooding: Easy to Break, Hard to Escape. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 10:1-10:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{austin_et_al:LIPIcs.DISC.2025.10,
  author =	{Austin, Henry and Gadouleau, Maximilien and Mertzios, George B. and Trehan, Amitabh},
  title =	{{Amnesiac Flooding: Easy to Break, Hard to Escape}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{10:1--10:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.10},
  URN =		{urn:nbn:de:0030-drops-248273},
  doi =		{10.4230/LIPIcs.DISC.2025.10},
  annote =	{Keywords: Amnesiac flooding, Terminating protocol, Algorithm state, Stateless protocol, Flooding algorithm, Network algorithms, Graph theory, Termination, Communication, Broadcast}
}
Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
DOI: 10.4230/OASIcs.Programming.2025.6
Exploration and Complexity Management in Graph-Based Programming Environments

Authors: Max Boksem and L. Thomas van Binsbergen

Published in: OASIcs, Volume 134, Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)

Abstract
Programmers often rely on different environments depending on the nature of their tasks. For large-scale software projects, IDEs help manage complexity through structured abstractions like files, modules, and classes, and provide tools for code visualization and navigation. In contrast, exploratory programming tasks - such as data analysis, rapid prototyping, and design space exploration - are better served by interactive environments like REPLs and Notebooks, which support incremental development and immediate feedback. However, these tools tend to prioritize either complexity management or exploration, limiting their effectiveness across contexts. This paper investigates a hybrid graph-based programming environment that bridges these two modes by building on Incremental Graph Code (IGC), a graph-based system for structuring, visualizing, and interacting with source code. We explore how IGC can support both complexity management and exploratory programming through three key features: projectional views for aggregating and navigating interrelated code and documentation, graph-type nodes for encapsulating subgraphs to manage structural complexity, and an exploratory programming view for managing branching executions and promoting experimentation. Together, these features suggest that graph-based environments like IGC can offer a unified platform for both systematic software engineering and dynamic, exploratory development.
Cite as

Max Boksem and L. Thomas van Binsbergen. Exploration and Complexity Management in Graph-Based Programming Environments. In Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025). Open Access Series in Informatics (OASIcs), Volume 134, pp. 6:1-6:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{boksem_et_al:OASIcs.Programming.2025.6,
  author =	{Boksem, Max and van Binsbergen, L. Thomas},
  title =	{{Exploration and Complexity Management in Graph-Based Programming Environments}},
  booktitle =	{Companion Proceedings of the 9th International Conference on the Art, Science, and Engineering of Programming (Programming 2025)},
  pages =	{6:1--6:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-382-9},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{134},
  editor =	{Edwards, Jonathan and Perera, Roly and Petricek, Tomas},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Programming.2025.6},
  URN =		{urn:nbn:de:0030-drops-242906},
  doi =		{10.4230/OASIcs.Programming.2025.6},
  annote =	{Keywords: Graph-based Programming Environments, Exploratory Programming, Complexity Management, Incremental Graph Code (IGC), Projectional Views}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.30
Finding Equilibria: Simpler for Pessimists, Simplest for Optimists

Authors: Léonard Brice, Thomas A. Henzinger, and K. S. Thejaswini

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
We consider equilibria in multiplayer stochastic graph games with terminal-node rewards. In such games, Nash equilibria are defined assuming that each player seeks to maximise their expected payoff, ignoring their aversion or tolerance to risk. We therefore study risk-sensitive equilibria (RSEs), where the expected payoff is replaced by a risk measure. A classical risk measure in the literature is the entropic risk measure, where each player has a real valued parameter capturing their risk-averseness. We introduce the extreme risk measure, which corresponds to extreme cases of entropic risk measure, where players are either extreme optimists or extreme pessimists. Under extreme risk measure, every player is an extremist: an extreme optimist perceives their reward as the maximum payoff that can be achieved with positive probability, while an extreme pessimist expects the minimum payoff achievable with positive probability. We argue that the extreme risk measure, especially in multi-player graph based settings, is particularly relevant as they can model several real life instances such as interactions between secure systems and potential security threats, or distributed controls for safety critical systems. We prove that RSEs defined with the extreme risk measure are guaranteed to exist when all rewards are non-negative. Furthermore, we prove that the problem of deciding whether a given game contains an RSE that generates risk measures within specified intervals is decidable and NP-complete for our extreme risk measure, and even PTIME-complete when all players are extreme optimists, while that same problem is undecidable using the entropic risk measure or even the classical expected payoff. This establishes, to our knowledge, the first decidable fragment for equilibria in simple stochastic games without restrictions on strategy types or number of players.
Cite as

Léonard Brice, Thomas A. Henzinger, and K. S. Thejaswini. Finding Equilibria: Simpler for Pessimists, Simplest for Optimists. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 30:1-30:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{brice_et_al:LIPIcs.MFCS.2025.30,
  author =	{Brice, L\'{e}onard and Henzinger, Thomas A. and Thejaswini, K. S.},
  title =	{{Finding Equilibria: Simpler for Pessimists, Simplest for Optimists}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{30:1--30:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.30},
  URN =		{urn:nbn:de:0030-drops-241371},
  doi =		{10.4230/LIPIcs.MFCS.2025.30},
  annote =	{Keywords: Nash equilibria, stochastic games, graph games, risk-sensitive equilibria}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.3
Enabling Containerisation of Distributed Applications with Real-Time Constraints

Authors: Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Containerisation is becoming a cornerstone of modern distributed systems, thanks to their lightweight virtualisation, high portability, and seamless integration with orchestration tools such as Kubernetes. The usage of containers has also gained traction in real-time cyber-physical systems, such as software-defined vehicles, which are characterised by strict timing requirements to ensure safety and performance. Nevertheless, ensuring real-time execution of co-located containers is challenging because of mutual interference due to the sharing of the same processing hardware. Existing parallel computing frameworks such as Ray and its Kubernetes-enabled variant, KubeRay, excel in distributed computation but lack support for scheduling policies that allow guaranteeing real-time timing constraints and CPU resource isolation between containers, such as the SCHED_DEADLINE policy of Linux. To fill this gap, this paper extends Ray to support real-time containers that leverage SCHED_DEADLINE. To this end, we propose KubeDeadline, a novel, modular Kubernetes extension to support SCHED_DEADLINE. We evaluate our approach through extensive experiments, using synthetic workloads and a case study based on the MobileNet and EfficientNet deep neural networks. Our evaluation shows that KubeDeadline ensures deadline compliance in all synthetic workloads, adds minimal deployment overhead (in the order of milliseconds), and achieves lower worst-case response times, up to 4 times lower, than vanilla Kubernetes under background interference.
Cite as

Nasim Samimi, Luca Abeni, Daniel Casini, Mauro Marinoni, Twan Basten, Mitra Nasri, Marc Geilen, and Alessandro Biondi. Enabling Containerisation of Distributed Applications with Real-Time Constraints. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 3:1-3:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{samimi_et_al:LIPIcs.ECRTS.2025.3,
  author =	{Samimi, Nasim and Abeni, Luca and Casini, Daniel and Marinoni, Mauro and Basten, Twan and Nasri, Mitra and Geilen, Marc and Biondi, Alessandro},
  title =	{{Enabling Containerisation of Distributed Applications with Real-Time Constraints}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{3:1--3:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.3},
  URN =		{urn:nbn:de:0030-drops-235816},
  doi =		{10.4230/LIPIcs.ECRTS.2025.3},
  annote =	{Keywords: Kubernetes, real-time containers, SCHED\underlineDEADLINE, KubeRay}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.19
Profile-Guided Field Externalization in an Ahead-Of-Time Compiler

Authors: Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Field externalization is a technique to reduce the footprint of objects by removing fields that most frequently contain zero or null. While researchers have developed ways to bring this optimization into the Java world, these have been limited to research compilers or virtual machines for embedded systems. In this work, we present a novel field externalization technique that uses information from static analysis and profiling to determine externalizable fields. During compilation, we remove those fields and define companion classes. These are used in case of non-default-value writes to the externalized fields. Our approach also correctly handles synchronization to prevent issues in multithreaded environments. We integrated our approach into the modern Java ahead-of-time compiler GraalVM Native Image. We conducted an evaluation on a diverse set of benchmarks that includes standard and microservice-based benchmarks. For standard benchmarks, our approach reduces the total allocated bytes by 2.76% and the maximum resident set size (max-RSS) by 2.55%. For microservice benchmarks, we achieved a reduction of 6.88% for normalized allocated bytes and 2.45% for max-RSS. We computed these improvements via the geometric mean. The median reductions are are 1.46% (alloc. bytes) and 0.22% (max-RSS) in standard benchmarks, as well as 3.63% (alloc. bytes) and 0.20% (max-RSS) in microservice benchmarks.
Cite as

Sebastian Kloibhofer, Lukas Makor, Peter Hofer, David Leopoldseder, and Hanspeter Mössenböck. Profile-Guided Field Externalization in an Ahead-Of-Time Compiler. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 19:1-19:32, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kloibhofer_et_al:LIPIcs.ECOOP.2025.19,
  author =	{Kloibhofer, Sebastian and Makor, Lukas and Hofer, Peter and Leopoldseder, David and M\"{o}ssenb\"{o}ck, Hanspeter},
  title =	{{Profile-Guided Field Externalization in an Ahead-Of-Time Compiler}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{19:1--19:32},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.19},
  URN =		{urn:nbn:de:0030-drops-233121},
  doi =		{10.4230/LIPIcs.ECOOP.2025.19},
  annote =	{Keywords: compilation, instrumentation, profiling, fields, externalization, memory footprint reduction, memory footprint optimization}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.23
Wastrumentation: Portable WebAssembly Dynamic Analysis with Support for Intercession

Authors: Aäron Munsters, Angel Luis Scull Pupo, and Elisa Gonzalez Boix

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Dynamic program analyses help in understanding a program’s runtime behavior and detect issues related to security, program comprehension, or profiling. Instrumentation platforms aid analysis developers by offering a high-level API to write the analysis, and inserting the analysis into the target program. However, current instrumentation platforms for WebAssembly (Wasm) restrict analysis portability because they require concrete runtime environments. Moreover, their analysis API only allows the development of analyses that observe the target program but cannot modify it. As a result, many popular dynamic analyses present for other languages, such as runtime hardening, virtual patching or runtime optimization, cannot currently be implemented for Wasm atop a dynamic analysis platform. Instead, they need to be built manually, which requires knowledge of low-level details of the Wasm’s semantics and instruction set, and how to safely manipulate it. This paper introduces Wastrumentation, the first dynamic analysis platform for WebAssembly that supports intercession. Our solution, based on source code instrumentation, weaves the analysis code directly into the target program code. Inlining the analysis into the target’s source code avoids dependencies on the runtime environment, making analyses portable across Wasm VMs. Moreover, it enables the implementation of analyses in any Wasm-compatible language. We evaluate our solution in two ways. First, we compare it against a state-of-the-art source code instrumentation platform using the WasmR3 benchmarks. The results show improved memory consumption and competitive performance overhead. Second, we develop an extensive portfolio of dynamic analyses, including novel analyses previously unattainable with source code instrumentation platforms, such as memoization, safe heap access, and the removal of NaN non-determinism.
Cite as

Aäron Munsters, Angel Luis Scull Pupo, and Elisa Gonzalez Boix. Wastrumentation: Portable WebAssembly Dynamic Analysis with Support for Intercession. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 23:1-23:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{munsters_et_al:LIPIcs.ECOOP.2025.23,
  author =	{Munsters, A\"{a}ron and Scull Pupo, Angel Luis and Gonzalez Boix, Elisa},
  title =	{{Wastrumentation: Portable WebAssembly Dynamic Analysis with Support for Intercession}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{23:1--23:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.23},
  URN =		{urn:nbn:de:0030-drops-233153},
  doi =		{10.4230/LIPIcs.ECOOP.2025.23},
  annote =	{Keywords: WebAssembly, dynamic analysis, instrumentation platform, intercession}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.ICDT.2025.1
The Quest for Faster Join Algorithms (Invited Talk)

Authors: Paraschos Koutris, Shaleen Deep, Austen Fan, and Hangdong Zhao

Published in: LIPIcs, Volume 328, 28th International Conference on Database Theory (ICDT 2025)

Abstract
Joins are the cornerstone of relational databases. Surprisingly, even after several decades of research in the systems and theory database community, we still lack an understanding of how to design the fastest possible join algorithm. In this talk, we will present the exciting progress the database theory community has achieved in join algorithms over the last two decades. The talk will revolve around five key ideas fundamentally shaping this research area: tree decompositions, data partitioning, leveraging statistical information, enumeration, and algebraic techniques.
Cite as

Paraschos Koutris, Shaleen Deep, Austen Fan, and Hangdong Zhao. The Quest for Faster Join Algorithms (Invited Talk). In 28th International Conference on Database Theory (ICDT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 328, pp. 1:1-1:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{koutris_et_al:LIPIcs.ICDT.2025.1,
  author =	{Koutris, Paraschos and Deep, Shaleen and Fan, Austen and Zhao, Hangdong},
  title =	{{The Quest for Faster Join Algorithms}},
  booktitle =	{28th International Conference on Database Theory (ICDT 2025)},
  pages =	{1:1--1:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-364-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{328},
  editor =	{Roy, Sudeepa and Kara, Ahmet},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2025.1},
  URN =		{urn:nbn:de:0030-drops-229428},
  doi =		{10.4230/LIPIcs.ICDT.2025.1},
  annote =	{Keywords: Conjunctive Queries, Joins, Tree Decompositions, Enumeration, Semirings}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2025.17
Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins

Authors: Kyle Deeds and Timo Camillo Merkl

Published in: LIPIcs, Volume 328, 28th International Conference on Database Theory (ICDT 2025)

Abstract
In the last decade, various works have used statistics on relations to improve both the theory and practice of conjunctive query execution. Starting with the AGM bound which took advantage of relation sizes, later works incorporated statistics like functional dependencies and degree constraints. Each new statistic prompted work along two lines; bounding the size of conjunctive query outputs and worst-case optimal join algorithms. In this work, we continue in this vein by introducing a new statistic called a partition constraint. This statistic captures latent structure within relations by partitioning them into sub-relations which each have much tighter degree constraints. We show that this approach can both refine existing cardinality bounds and improve existing worst-case optimal join algorithms.
Cite as

Kyle Deeds and Timo Camillo Merkl. Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins. In 28th International Conference on Database Theory (ICDT 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 328, pp. 17:1-17:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{deeds_et_al:LIPIcs.ICDT.2025.17,
  author =	{Deeds, Kyle and Merkl, Timo Camillo},
  title =	{{Partition Constraints for Conjunctive Queries: Bounds and Worst-Case Optimal Joins}},
  booktitle =	{28th International Conference on Database Theory (ICDT 2025)},
  pages =	{17:1--17:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-364-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{328},
  editor =	{Roy, Sudeepa and Kara, Ahmet},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2025.17},
  URN =		{urn:nbn:de:0030-drops-229588},
  doi =		{10.4230/LIPIcs.ICDT.2025.17},
  annote =	{Keywords: Worst-Case Optimal Joins, Cardinality Bounds, Degeneracy, Degree Constraints, Partition Constraints}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.40
Identity-Preserving Lax Extensions and Where to Find Them

Authors: Sergey Goncharov, Dirk Hofmann, Pedro Nora, Lutz Schröder, and Paul Wild

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
Generic notions of bisimulation for various types of systems (nondeterministic, probabilistic, weighted etc.) rely on identity-preserving (normal) lax extensions of the functor encapsulating the system type, in the paradigm of universal coalgebra. It is known that preservation of weak pullbacks is a sufficient condition for a functor to admit a normal lax extension (the Barr extension, which in fact is then even strict); in the converse direction, nothing is currently known about necessary (weak) pullback preservation conditions for the existence of normal lax extensions. In the present work, we narrow this gap by showing on the one hand that functors admitting a normal lax extension preserve 1/4-iso pullbacks, i.e. pullbacks in which at least one of the projections is an isomorphism. On the other hand, we give sufficient conditions, showing that a functor admits a normal lax extension if it weakly preserves either 1/4-iso pullbacks and 4/4-epi pullbacks (i.e. pullbacks in which all morphisms are epic) or inverse images. We apply these criteria to concrete examples, in particular to functors modelling neighbourhood systems and weighted systems.
Cite as

Sergey Goncharov, Dirk Hofmann, Pedro Nora, Lutz Schröder, and Paul Wild. Identity-Preserving Lax Extensions and Where to Find Them. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 40:1-40:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{goncharov_et_al:LIPIcs.STACS.2025.40,
  author =	{Goncharov, Sergey and Hofmann, Dirk and Nora, Pedro and Schr\"{o}der, Lutz and Wild, Paul},
  title =	{{Identity-Preserving Lax Extensions and Where to Find Them}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{40:1--40:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.40},
  URN =		{urn:nbn:de:0030-drops-228665},
  doi =		{10.4230/LIPIcs.STACS.2025.40},
  annote =	{Keywords: (Bi-)simulations, lax extensions, modal logics, coalgebra}
}
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