32 Search Results for "Yue, Yang"

Document
DOI: 10.4230/DagMan.11.1.19
Conversational Agents: A Framework for Evaluation (CAFE) (Dagstuhl Perspectives Workshop 24352)

Authors: Christine Bauer, Li Chen, Nicola Ferro, Norbert Fuhr, Avishek Anand, Timo Breuer, Guglielmo Faggioli, Ophir Frieder, Hideo Joho, Jussi Karlgren, Johannes Kiesel, Bart P. Knijnenburg, Aldo Lipani, Lien Michiels, Andrea Papenmeier, Maria Soledad Pera, Mark Sanderson, Scott Sanner, Benno Stein, Johanne R. Trippas, Karin Verspoor, and Martijn C. Willemsen

Published in: Dagstuhl Manifestos, Volume 11, Issue 1 (2025)

Abstract
During the workshop, we deeply discussed what CONversational Information ACcess (CONIAC) is and its unique features, proposing a world model abstracting it, and defined the Conversational Agents Framework for Evaluation (CAFE) for the evaluation of CONIAC systems, consisting of six major components: 1) goals of the system’s stakeholders, 2) user tasks to be studied in the evaluation, 3) aspects of the users carrying out the tasks, 4) evaluation criteria to be considered, 5) evaluation methodology to be applied, and 6) measures for the quantitative criteria chosen.
Cite as

Christine Bauer, Li Chen, Nicola Ferro, Norbert Fuhr, Avishek Anand, Timo Breuer, Guglielmo Faggioli, Ophir Frieder, Hideo Joho, Jussi Karlgren, Johannes Kiesel, Bart P. Knijnenburg, Aldo Lipani, Lien Michiels, Andrea Papenmeier, Maria Soledad Pera, Mark Sanderson, Scott Sanner, Benno Stein, Johanne R. Trippas, Karin Verspoor, and Martijn C. Willemsen. Conversational Agents: A Framework for Evaluation (CAFE) (Dagstuhl Perspectives Workshop 24352). In Dagstuhl Manifestos, Volume 11, Issue 1, pp. 19-67, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{bauer_et_al:DagMan.11.1.19,
  author =	{Bauer, Christine and Chen, Li and Ferro, Nicola and Fuhr, Norbert and Anand, Avishek and Breuer, Timo and Faggioli, Guglielmo and Frieder, Ophir and Joho, Hideo and Karlgren, Jussi and Kiesel, Johannes and Knijnenburg, Bart P. and Lipani, Aldo and Michiels, Lien and Papenmeier, Andrea and Pera, Maria Soledad and Sanderson, Mark and Sanner, Scott and Stein, Benno and Trippas, Johanne R. and Verspoor, Karin and Willemsen, Martijn C.},
  title =	{{Conversational Agents: A Framework for Evaluation (CAFE) (Dagstuhl Perspectives Workshop 24352)}},
  pages =	{19--67},
  journal =	{Dagstuhl Manifestos},
  ISSN =	{2193-2433},
  year =	{2025},
  volume =	{11},
  number =	{1},
  editor =	{Bauer, Christine and Chen, Li and Ferro, Nicola and Fuhr, Norbert and Anand, Avishek and Breuer, Timo and Faggioli, Guglielmo and Frieder, Ophir and Joho, Hideo and Karlgren, Jussi and Kiesel, Johannes and Knijnenburg, Bart P. and Lipani, Aldo and Michiels, Lien and Papenmeier, Andrea and Pera, Maria Soledad and Sanderson, Mark and Sanner, Scott and Stein, Benno and Trippas, Johanne R. and Verspoor, Karin and Willemsen, Martijn C.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagMan.11.1.19},
  URN =		{urn:nbn:de:0030-drops-252722},
  doi =		{10.4230/DagMan.11.1.19},
  annote =	{Keywords: Conversational Agents, Evaluation, Information Access}
}
Document
Survey
DOI: 10.4230/TGDK.3.2.1
Resilience in Knowledge Graph Embeddings

Authors: Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this end have demonstrated their utility in effectively representing structured knowledge. To further facilitate the application of machine learning techniques, knowledge graph embedding models have been developed. Such models can transform entities and relationships within knowledge graphs into vectors. However, these embedding models often face challenges related to noise, missing information, distribution shift, adversarial attacks, etc. This can lead to sub-optimal embeddings and incorrect inferences, thereby negatively impacting downstream applications. While the existing literature has focused so far on adversarial attacks on KGE models, the challenges related to the other critical aspects remain unexplored. In this paper, we, first of all, give a unified definition of resilience, encompassing several factors such as generalisation, in-distribution generalization, distribution adaption, and robustness. After formalizing these concepts for machine learning in general, we define them in the context of knowledge graphs. To find the gap in the existing works on resilience in the context of knowledge graphs, we perform a systematic survey, taking into account all these aspects mentioned previously. Our survey results show that most of the existing works focus on a specific aspect of resilience, namely robustness. After categorizing such works based on their respective aspects of resilience, we discuss the challenges and future research directions.
Cite as

Arnab Sharma, N'Dah Jean Kouagou, and Axel-Cyrille Ngonga Ngomo. Resilience in Knowledge Graph Embeddings. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 1:1-1:38, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{sharma_et_al:TGDK.3.2.1,
  author =	{Sharma, Arnab and Kouagou, N'Dah Jean and Ngomo, Axel-Cyrille Ngonga},
  title =	{{Resilience in Knowledge Graph Embeddings}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{1:1--1:38},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.1},
  URN =		{urn:nbn:de:0030-drops-248117},
  doi =		{10.4230/TGDK.3.2.1},
  annote =	{Keywords: Knowledge graphs, Resilience, Robustness}
}
Document
Research
DOI: 10.4230/TGDK.3.2.3
GraphRAG on Technical Documents - Impact of Knowledge Graph Schema

Authors: Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
Retrieval Augmented Generation (RAG) is seeing rapid adoption in industry to enable employees to query information captured in proprietary data for their organisation. In this work, we test the impact of domain-relevant knowledge graph schemas on the results of Microsoft’s GraphRAG pipeline. Our approach aims to address the poor quality of GraphRAG responses on technical reports rich in domain-specific terms. The use case involves technical reports about geology, chemistry and mineral processing published by the Minerals Research Institute of Western Australia (MRIWA). Four schemas are considered: a simple five-class minerals domain expert-developed schema, an expanded minerals domain schema, the Microsoft GraphRAG auto-generated schema, and a schema-less GraphRAG. These are compared to a conventional baseline RAG. Performance is evaluated using a scoring approach that accounts for the mix of correct, incorrect, additional, and missing content in RAG responses. The results show that the simple five-class minerals domain schema extracts approximately 10% more entities from the MRIWA reports than the other schema options. Additionally, both the five-class and the expanded eight-class minerals domain schemas produce the most factually correct answers and the fewest hallucinations. We attribute this to the minerals-specific schemas extracting more relevant, domain-specific information during the Indexing stage. As a result, the Query stage’s context window includes more high-value content. This contributes to the observed improvement in answer quality compared to the other pipelines. In contrast, pipelines with fewer domain-related entities in the KG retrieve less valuable information, leaving more room for irrelevant content in the context window. Baseline RAG responses were typically shorter, less complete, and contained more hallucinations compared to our GraphRAG pipelines. We provide a complete set of resources at https://github.com/nlp-tlp/GraphRAG-on-Minerals-Domain/tree/main. These resources include links to the MRIWA reports, a set of questions (from simple to challenging) along with domain-expert curated answers, schemas, and evaluations of the pipelines.
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Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke. GraphRAG on Technical Documents - Impact of Knowledge Graph Schema. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 3:1-3:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{scaffidi_et_al:TGDK.3.2.3,
  author =	{Scaffidi, Henri and Hodkiewicz, Melinda and Woods, Caitlin and Roocke, Nicole},
  title =	{{GraphRAG on Technical Documents - Impact of Knowledge Graph Schema}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:24},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.3},
  URN =		{urn:nbn:de:0030-drops-248131},
  doi =		{10.4230/TGDK.3.2.3},
  annote =	{Keywords: RAG, minerals, local search, global search, entity extraction, competency questions}
}
Document
DOI: 10.4230/LIPIcs.ITP.2025.14
Canonical for Automated Theorem Proving in Lean

Authors: Chase Norman and Jeremy Avigad

Published in: LIPIcs, Volume 352, 16th International Conference on Interactive Theorem Proving (ITP 2025)

Abstract
Canonical is a solver for type inhabitation in dependent type theory, that is, the problem of producing a term of a given type. We present a Lean tactic which invokes Canonical to generate proof terms and synthesize programs. The tactic supports higher-order and dependently-typed goals, structural recursion over indexed inductive types, and definitional equality. Canonical finds proofs for 84% of Natural Number Game problems in 51 seconds total.
Cite as

Chase Norman and Jeremy Avigad. Canonical for Automated Theorem Proving in Lean. In 16th International Conference on Interactive Theorem Proving (ITP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 352, pp. 14:1-14:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{norman_et_al:LIPIcs.ITP.2025.14,
  author =	{Norman, Chase and Avigad, Jeremy},
  title =	{{Canonical for Automated Theorem Proving in Lean}},
  booktitle =	{16th International Conference on Interactive Theorem Proving (ITP 2025)},
  pages =	{14:1--14:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-396-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{352},
  editor =	{Forster, Yannick and Keller, Chantal},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2025.14},
  URN =		{urn:nbn:de:0030-drops-246128},
  doi =		{10.4230/LIPIcs.ITP.2025.14},
  annote =	{Keywords: Automated Reasoning, Interactive Theorem Proving, Dependent Type Theory, Inhabitation, Unification, Program Synthesis, Formal Methods}
}
Document
DOI: 10.4230/OASIcs.SpaceCHI.2025.29
Gaze Beyond Limits: Integrating Eye-Tracking and Augmented Reality for Next-Generation Spacesuit Interaction

Authors: Jiayu He, Yifan Li, Oliver R. Runswick, Peter D. Hodkinson, Jarle Steinberg, Felix Gorbatsevich, and Yang Gao

Published in: OASIcs, Volume 130, Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)

Abstract
Extravehicular activities (EVAs) are increasingly frequent in human spaceflight, particularly in spacecraft maintenance, scientific research, and planetary exploration. Spacesuits are essential for sustaining astronauts in the harsh environment of space, making their design a key factor in the success of EVA missions. The development of spacesuit technology has traditionally been driven by highly engineered solutions focused on life support, mission adaptability and operational efficiency. Modern spacesuits prioritize maintaining optimal internal temperature, humidity and pressure, as well as withstanding extreme temperature fluctuations and providing robust protection against micrometeoroid impacts and space debris. However, their bulkiness and rigidity impose significant physical strain on astronauts, reducing mobility and dexterity, particularly in tasks requiring fine motor control. The restricted field of view further complicates situational awareness, increasing the cognitive load during high-precision operations. While traditional spacesuits support basic EVA tasks, future space exploration shifting toward long-duration lunar and Martian surface missions demand more adaptive, intelligent, and astronaut-centric designs to overcome current constraints. To explore a next-generation spacesuit, this paper proposed an in-process eye-tracking embedded Augmented Reality (AR) Spacesuit System to enhance astronaut-environment interactions. By leveraging Segment-Anything Models (SAM) and Vision-Language Models (VLMs), we demonstrate a four-step approach to enable top-down gaze detection to minimize erroneous fixation data, gaze-based segmentation of objects of interest, real-time contextual assistance via AR overlays and hands-free operation within the spacesuit. This approach enhances real-time situational awareness and improves EVA task efficiency. We conclude with an exploration of the AR Helmet System’s potential in revolutionizing human-space interaction paradigms for future long-duration deep-space missions and discuss the further optimization of eye-tracking interactions using VLMs to predict astronaut intent and highlight relevant objects preemptively.
Cite as

Jiayu He, Yifan Li, Oliver R. Runswick, Peter D. Hodkinson, Jarle Steinberg, Felix Gorbatsevich, and Yang Gao. Gaze Beyond Limits: Integrating Eye-Tracking and Augmented Reality for Next-Generation Spacesuit Interaction. In Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025). Open Access Series in Informatics (OASIcs), Volume 130, pp. 29:1-29:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{he_et_al:OASIcs.SpaceCHI.2025.29,
  author =	{He, Jiayu and Li, Yifan and Runswick, Oliver R. and Hodkinson, Peter D. and Steinberg, Jarle and Gorbatsevich, Felix and Gao, Yang},
  title =	{{Gaze Beyond Limits: Integrating Eye-Tracking and Augmented Reality for Next-Generation Spacesuit Interaction}},
  booktitle =	{Advancing Human-Computer Interaction for Space Exploration (SpaceCHI 2025)},
  pages =	{29:1--29:15},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-384-3},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{130},
  editor =	{Bensch, Leonie and Nilsson, Tommy and Nisser, Martin and Pataranutaporn, Pat and Schmidt, Albrecht and Sumini, Valentina},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SpaceCHI.2025.29},
  URN =		{urn:nbn:de:0030-drops-240197},
  doi =		{10.4230/OASIcs.SpaceCHI.2025.29},
  annote =	{Keywords: Augmented Reality (AR), Eye-Tracking, Cognitive Load/Workload, Segment Anything Model (SAM), Visual Language Models (VLMs)}
}
Document
DOI: 10.4230/OASIcs.ICPEC.2025.9
Are We There Yet? On Security Vulnerabilities Produced by Open Source Generative AI Models and Its Implications for Security Education

Authors: Maria Camila Santos Galeano, Tiago Espinha Gasiba, Sathwik Amburi, and Maria Pinto-Albuquerque

Published in: OASIcs, Volume 133, 6th International Computer Programming Education Conference (ICPEC 2025)

Abstract
With the increasing integration of large language models (LLMs) into software development and programming education, concerns have emerged about the security of AI-generated code. This study investigates the security of three open source code generation models. Codestral, DeepSeek R1, and LLaMA 3.3 70B using structured prompts in Python, C, and Java. Some prompts were designed to explicitly trigger known vulnerability patterns, such as unsanitized input handling or unsafe memory operations, in order to assess how each model responds to security-sensitive tasks. The findings reveal recurring issues, including command execution vulnerabilities, insecure memory handling, and insufficient input validation. In response, we propose a set of recommendations for integrating secure prompt design and code auditing practices into developer training. These guidelines aim to help future developers generate safer code and better identify flaws in GenAI-generated output. This work offers an initial analysis of the limitations of GenAI-assisted code generation and provides actionable strategies to support the more secure and responsible use of these tools in professional and educational contexts.
Cite as

Maria Camila Santos Galeano, Tiago Espinha Gasiba, Sathwik Amburi, and Maria Pinto-Albuquerque. Are We There Yet? On Security Vulnerabilities Produced by Open Source Generative AI Models and Its Implications for Security Education. In 6th International Computer Programming Education Conference (ICPEC 2025). Open Access Series in Informatics (OASIcs), Volume 133, pp. 9:1-9:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{santosgaleano_et_al:OASIcs.ICPEC.2025.9,
  author =	{Santos Galeano, Maria Camila and Espinha Gasiba, Tiago and Amburi, Sathwik and Pinto-Albuquerque, Maria},
  title =	{{Are We There Yet? On Security Vulnerabilities Produced by Open Source Generative AI Models and Its Implications for Security Education}},
  booktitle =	{6th International Computer Programming Education Conference (ICPEC 2025)},
  pages =	{9:1--9:12},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-393-5},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{133},
  editor =	{Queir\'{o}s, Ricardo and Pinto, M\'{a}rio and Portela, Filipe and Sim\~{o}es, Alberto},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.ICPEC.2025.9},
  URN =		{urn:nbn:de:0030-drops-240395},
  doi =		{10.4230/OASIcs.ICPEC.2025.9},
  annote =	{Keywords: Generative AI, Code Security, Programming Education, Prompt Engineering, Secure Coding, Static Analysis}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.12
Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing

Authors: Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Millions of biological sample records collected in the last few centuries archived in natural history collections are un-georeferenced. Georeferencing complex locality descriptions associated with these collection samples is a highly labour-intensive task collection agencies struggle with. None of the existing automated methods exploit maps that are an essential tool for georeferencing complex relations. We present preliminary experiments and results of a novel method that exploits multi-modal capabilities of recent Large Multi-Modal Models (LMM). This method enables the model to visually contextualize spatial relations it reads in the locality description. We use a grid-based approach to adapt these auto-regressive models for this task in a zero-shot setting. Our experiments conducted on a small manually annotated dataset show impressive results for our approach (∼1 km Average distance error) compared to uni-modal georeferencing with Large Language Models and existing georeferencing tools. The paper also discusses the findings of the experiments in light of an LMM’s ability to comprehend fine-grained maps. Motivated by these results, a practical framework is proposed to integrate this method into a georeferencing workflow.
Cite as

Kalana Wijegunarathna, Kristin Stock, and Christopher B. Jones. Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 12:1-12:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{wijegunarathna_et_al:LIPIcs.GIScience.2025.12,
  author =	{Wijegunarathna, Kalana and Stock, Kristin and Jones, Christopher B.},
  title =	{{Large Multi-Modal Model Cartographic Map Comprehension for Textual Locality Georeferencing}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{12:1--12:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.12},
  URN =		{urn:nbn:de:0030-drops-238412},
  doi =		{10.4230/LIPIcs.GIScience.2025.12},
  annote =	{Keywords: Large Multi-Modal Models, Large Language Models, LLM, Georeferencing, Natural History collections}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.6
MODAP: A Multi-City Open Data & Analytics Platform for Micromobility Research

Authors: Grant McKenzie

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
Over the past decade, micromobility services, particularly electric vehicles for personal short-distance trips, have experienced significant growth. Major cities around the world now host extensive fleets of vehicles available for short-term public rental. While previous research has examined usage patterns within and between a few select cities, large, open, and publicly accessible data sets for analyzing mobility across multiple cities are extremely limited. I have collected, curated, and aggregated over twenty million e-scooter and e-bicycle trips across five major cities and are openly releasing aggregated data for use by mobility and sustainable transport researchers, urban planners, and policymakers. To accompany these data, I developed MODAP (Micromobility Open Data & Analytics Platform), a geovisual analytics tool that empowers researchers to explore the temporal and regional patterns of e-mobility trips within our open data set and download the data for offline analysis. My objective is to foster further research into city-scale mobility patterns and to equip researchers, community members, and policymakers with the necessary tools to conduct this work.
Cite as

Grant McKenzie. MODAP: A Multi-City Open Data & Analytics Platform for Micromobility Research. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 6:1-6:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{mckenzie:LIPIcs.GIScience.2025.6,
  author =	{McKenzie, Grant},
  title =	{{MODAP: A Multi-City Open Data \& Analytics Platform for Micromobility Research}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{6:1--6:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.6},
  URN =		{urn:nbn:de:0030-drops-238353},
  doi =		{10.4230/LIPIcs.GIScience.2025.6},
  annote =	{Keywords: open data, mobility, geovisualization, micromobility}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.7
A Modularity-Driven Framework for Unraveling Congestion Centers with Enhanced Spatial-Semantic Features

Authors: Weihua Huan, Xintao Liu, and Wei Huang

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
The propagation of traffic congestion is a complicated spatiotemporal phenomenon in urban networks. Extensive studies mainly relied on dynamic Bayesian network or deep learning approaches. However, they often struggle to adapt seamlessly to diverse data granularities, limiting their applicability. In this study, we propose a modularity-driven method to unravel the spatiotemporal congestion propagation centers, effectively addressing temporal granularity challenges through the use of the fast Fourier Transform (FFT). Our framework distinguishes itself due to its capacity to integrate enhanced spatial-semantic features while eliminating temporal granularity dependence, which consists of two data-driven modules. One is adaptive adjacency matrix learning module, which captures the spatiotemporal relationship from evolving congestion graphs by fusing node degree, spatial proximity, and the FFT of traffic state indices. The other one is local search module, which employs local dominance principles to unravel the congestion propagation centers. We validate our proposed methodology on the large-scale traffic networks in New York City, the United States. An ablation study on the dataset reveals that the combination of the three features achieves the highest modularity scores of 0.65. The contribution of our work is to provide a novel way to infer the propagation centers of traffic congestion, and reveals the flexibility of extending our framework at temporal scales. The network resilience and dynamic evolution of the identified congestion centers can provide implications for actional decisions.
Cite as

Weihua Huan, Xintao Liu, and Wei Huang. A Modularity-Driven Framework for Unraveling Congestion Centers with Enhanced Spatial-Semantic Features. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 7:1-7:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{huan_et_al:LIPIcs.GIScience.2025.7,
  author =	{Huan, Weihua and Liu, Xintao and Huang, Wei},
  title =	{{A Modularity-Driven Framework for Unraveling Congestion Centers with Enhanced Spatial-Semantic Features}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{7:1--7:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.7},
  URN =		{urn:nbn:de:0030-drops-238362},
  doi =		{10.4230/LIPIcs.GIScience.2025.7},
  annote =	{Keywords: Congestion center, Temporal granularity, Fast Fourier Transform, Local dominance}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.11
Mutational Signature Refitting on Sparse Pan-Cancer Data

Authors: Gal Gilad, Teresa M. Przytycka, and Roded Sharan

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Mutational processes shape cancer genomes, leaving characteristic marks that are termed signatures. The level of activity of each such process, or its signature exposure, provides important information on the disease, improving patient stratification and the prediction of drug response. Thus, there is growing interest in developing refitting methods that decipher those exposures. Previous work in this domain was unsupervised in nature, employing algebraic decomposition and probabilistic inference methods. Here we provide a supervised approach to the problem of signature refitting and show its superiority over current methods. Our method, SuRe, leverages a neural network model to capture correlations between signature exposures in real data. We show that SuRe outperforms previous methods on sparse mutation data from tumor type specific data sets, as well as pan-cancer data sets, with an increasing advantage as the data become sparser. We further demonstrate its utility in clinical settings.
Cite as

Gal Gilad, Teresa M. Przytycka, and Roded Sharan. Mutational Signature Refitting on Sparse Pan-Cancer Data. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 11:1-11:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gilad_et_al:LIPIcs.WABI.2025.11,
  author =	{Gilad, Gal and Przytycka, Teresa M. and Sharan, Roded},
  title =	{{Mutational Signature Refitting on Sparse Pan-Cancer Data}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{11:1--11:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.11},
  URN =		{urn:nbn:de:0030-drops-239374},
  doi =		{10.4230/LIPIcs.WABI.2025.11},
  annote =	{Keywords: mutational signatures, signature refitting, cancer genomics, genomic data analysis, somatic mutations}
}
Document
DOI: 10.4230/OASIcs.Manzini.10
Phasing Data from Genotype Queries via the μ-PBWT

Authors: Davide Cozzi, Paola Bonizzoni, Christina Boucher, Ben Langmead, and Yuri Pirola

Published in: OASIcs, Volume 131, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday (2025)

Abstract
Genotype phasing - the process of reconstructing haplotypes from genotype data - is a fundamental problem in genomics with applications in ancestry inference, imputation, and disease association. Traditional phasing methods rely on statistical models or combinatorial approaches which can be computationally expensive, particularly when applied to large-scale reference panels. In this paper, we present a first exploration of using the μ-PBWT (a run-length encoded Positional Burrows-Wheeler Transform) to solve the genotype phasing problem with a reference panel. Leveraging our previous results on positional substrings, we propose an approach that can explain a query genotype if the corresponding haplotype pair exists in the input panel. Moreover, our method is extended to cases where such a pair does not exist, even though some regions should remain unphased if they cannot be explicitly explained using the reference panel. We implemented this method and compared it against Beagle, a state-of-the-art phasing tool, demonstrating that, in the absence of mutations and recombinations, our approach correctly identifies the haplotype pair that explains a genotype query while using seven times less memory than Beagle. However, we also observe that as mutation rates increase, the quality of the phasing decreases as a result of the growing difficulty of identifying consistent haplotype pairs in the presence of sequence variation. These findings highlight the potential of μ-PBWT as an efficient alternative for genotype phasing, particularly in settings where computational resources are limited. The source code is publicly available at https://github.com/dlcgold/muPBWT/tree/phase.
Cite as

Davide Cozzi, Paola Bonizzoni, Christina Boucher, Ben Langmead, and Yuri Pirola. Phasing Data from Genotype Queries via the μ-PBWT. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Open Access Series in Informatics (OASIcs), Volume 131, pp. 10:1-10:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{cozzi_et_al:OASIcs.Manzini.10,
  author =	{Cozzi, Davide and Bonizzoni, Paola and Boucher, Christina and Langmead, Ben and Pirola, Yuri},
  title =	{{Phasing Data from Genotype Queries via the \mu-PBWT}},
  booktitle =	{The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday},
  pages =	{10:1--10:17},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-390-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{131},
  editor =	{Ferragina, Paolo and Gagie, Travis and Navarro, Gonzalo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.Manzini.10},
  URN =		{urn:nbn:de:0030-drops-239183},
  doi =		{10.4230/OASIcs.Manzini.10},
  annote =	{Keywords: Positional Burrows-Wheeler Transform, r-index, minimal position substring cover, set-maximal exact matches, genotype phasing}
}
Document
DOI: 10.4230/OASIcs.SLATE.2025.9
Semantic Representation of Adverbs in the Lexicalized Meaning Representation (LMR) Framework

Authors: Jorge Baptista, Izabela Müller, and Sónia Reis

Published in: OASIcs, Volume 135, 14th Symposium on Languages, Applications and Technologies (SLATE 2025)

Abstract
Semantic parsing serves as a crucial interface between natural language and formal meaning representations, enabling computational systems to capture the underlying semantic structure of linguistic expressions. This paper addresses a relatively understudied area in both linguistic theory and natural language processing: the semantic representation of adverbs. We conduct a comparative analysis of annotation guidelines and practices across two semantic representation frameworks: Lexicalized Meaning Representation (LMR), applied to the European Portuguese edition of the novella "O Principezinho" by Antoine de Saint-Exupéry (1943); and Abstract Meaning Representation (AMR), applied to the Brazilian Portuguese edition, "O Pequeno Príncipe". The study reveals significant limitations in AMR’s handling of adverbial constructions, particularly when assessed against contemporary syntactic-semantic advances in linguistic theory. Furthermore, it highlights the theoretical and practical challenges that LMR continues to face in this domain.
Cite as

Jorge Baptista, Izabela Müller, and Sónia Reis. Semantic Representation of Adverbs in the Lexicalized Meaning Representation (LMR) Framework. In 14th Symposium on Languages, Applications and Technologies (SLATE 2025). Open Access Series in Informatics (OASIcs), Volume 135, pp. 9:1-9:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{baptista_et_al:OASIcs.SLATE.2025.9,
  author =	{Baptista, Jorge and M\"{u}ller, Izabela and Reis, S\'{o}nia},
  title =	{{Semantic Representation of Adverbs in the Lexicalized Meaning Representation (LMR) Framework}},
  booktitle =	{14th Symposium on Languages, Applications and Technologies (SLATE 2025)},
  pages =	{9:1--9:18},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-95977-387-4},
  ISSN =	{2190-6807},
  year =	{2025},
  volume =	{135},
  editor =	{Baptista, Jorge and Barateiro, Jos\'{e}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.SLATE.2025.9},
  URN =		{urn:nbn:de:0030-drops-236891},
  doi =		{10.4230/OASIcs.SLATE.2025.9},
  annote =	{Keywords: Semantic representation, Adverbs, Lexicalized Meaning Representation (LMR), Abstract Meaning Representation (AMR), Annotation guidelines, European Portuguese, Brazilian Portuguese, Comparative analysis, The Little Prince, Corpus linguistics, Natural Language Processing (NLP), Multi-word expressions, Syntactic-semantic interface, Linguistic theory}
}
Document
DOI: 10.4230/LIPIcs.SEA.2025.11
CluStRE: Streaming Graph Clustering with Multi-Stage Refinement

Authors: Adil Chhabra, Shai Dorian Peretz, and Christian Schulz

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract
We present CluStRE, a novel streaming graph clustering algorithm that balances computational efficiency with high-quality clustering using multi-stage refinement. Unlike traditional in-memory clustering approaches, CluStRE processes graphs in a streaming setting, significantly reducing memory overhead while leveraging re-streaming and evolutionary heuristics to improve solution quality. Our method dynamically constructs a quotient graph, enabling modularity-based optimization while efficiently handling large-scale graphs. We introduce multiple configurations of CluStRE to provide trade-offs between speed, memory consumption, and clustering quality. Experimental evaluations demonstrate that CluStRE improves solution quality by 89.8%, operates 2.6× faster, and uses less than two-thirds of the memory required by the state-of-the-art streaming clustering algorithm on average. Moreover, our strongest mode enhances solution quality by up to 150% on average. With this, CluStRE achieves comparable solution quality to in-memory algorithms, i.e. over 96% of the quality of clustering approaches, including Louvain, effectively bridging the gap between streaming and traditional clustering methods.
Cite as

Adil Chhabra, Shai Dorian Peretz, and Christian Schulz. CluStRE: Streaming Graph Clustering with Multi-Stage Refinement. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 11:1-11:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chhabra_et_al:LIPIcs.SEA.2025.11,
  author =	{Chhabra, Adil and Dorian Peretz, Shai and Schulz, Christian},
  title =	{{CluStRE: Streaming Graph Clustering with Multi-Stage Refinement}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{11:1--11:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.11},
  URN =		{urn:nbn:de:0030-drops-232493},
  doi =		{10.4230/LIPIcs.SEA.2025.11},
  annote =	{Keywords: graph clustering, community, streaming, online, memetic, evolutionary}
}
Document
DOI: 10.4230/LIPIcs.ECRTS.2025.13
Faster Classification of Time-Series Input Streams

Authors: Kunal Agrawal, Sanjoy Baruah, Zhishan Guo, Jing Li, Federico Reghenzani, Kecheng Yang, and Jinhao Zhao

Published in: LIPIcs, Volume 335, 37th Euromicro Conference on Real-Time Systems (ECRTS 2025)

Abstract
Deep learning–based classifiers are widely used for perception in autonomous Cyber-Physical Systems (CPS’s). However, such classifiers rarely offer guarantees of perfect accuracy while being optimized for efficiency. To support safety-critical perception, ensembles of multiple different classifiers working in concert are typically used. Since CPS’s interact with the physical world continuously, it is not unreasonable to expect dependencies among successive inputs in a stream of sensor data. Prior work introduced a classification technique that leverages these inter-input dependencies to reduce the average time to successful classification using classifier ensembles. In this paper, we propose generalizations to this classification technique, both in the improved generation of classifier cascades and the modeling of temporal dependencies. We demonstrate, through theoretical analysis and numerical evaluation, that our approach achieves further reductions in average classification latency compared to the prior methods.
Cite as

Kunal Agrawal, Sanjoy Baruah, Zhishan Guo, Jing Li, Federico Reghenzani, Kecheng Yang, and Jinhao Zhao. Faster Classification of Time-Series Input Streams. In 37th Euromicro Conference on Real-Time Systems (ECRTS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 335, pp. 13:1-13:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{agrawal_et_al:LIPIcs.ECRTS.2025.13,
  author =	{Agrawal, Kunal and Baruah, Sanjoy and Guo, Zhishan and Li, Jing and Reghenzani, Federico and Yang, Kecheng and Zhao, Jinhao},
  title =	{{Faster Classification of Time-Series Input Streams}},
  booktitle =	{37th Euromicro Conference on Real-Time Systems (ECRTS 2025)},
  pages =	{13:1--13:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-377-5},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{335},
  editor =	{Mancuso, Renato},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECRTS.2025.13},
  URN =		{urn:nbn:de:0030-drops-235919},
  doi =		{10.4230/LIPIcs.ECRTS.2025.13},
  annote =	{Keywords: Classification, Deep Learning, Sensor data streams, IDK classifiers}
}
Document
Invited Talk
DOI: 10.4230/LIPIcs.FSCD.2025.2
Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs (Invited Talk)

Authors: Matthew L. Daggitt, Wen Kokke, Robert Atkey, Ekaterina Komendantskaya, Natalia Slusarz, and Luca Arnaboldi

Published in: LIPIcs, Volume 337, 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)

Abstract
Neuro-symbolic programs, i.e. programs containing both machine learning components and traditional symbolic code, are becoming increasingly widespread. Finding a general methodology for verifying such programs is challenging due to both the number of different tools involved and the intricate interface between the "neural" and "symbolic" program components. In this paper we present a general decomposition of the neuro-symbolic verification problem into parts, and examine the problem of the embedding gap that occurs when one tries to combine proofs about the neural and symbolic components. To address this problem we then introduce Vehicle - standing as an abbreviation for a "verification condition language" - an intermediate programming language interface between machine learning frameworks, automated theorem provers, and dependently-typed formalisations of neuro-symbolic programs. Vehicle allows users to specify the properties of the neural components of neuro-symbolic programs once, and then safely compile the specification to each interface using a tailored typing and compilation procedure. We give a high-level overview of Vehicle’s overall design, its interfaces and compilation & type-checking procedures, and then demonstrate its utility by formally verifying the safety of a simple autonomous car controlled by a neural network, operating in a stochastic environment with imperfect information.
Cite as

Matthew L. Daggitt, Wen Kokke, Robert Atkey, Ekaterina Komendantskaya, Natalia Slusarz, and Luca Arnaboldi. Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs (Invited Talk). In 10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 337, pp. 2:1-2:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{daggitt_et_al:LIPIcs.FSCD.2025.2,
  author =	{Daggitt, Matthew L. and Kokke, Wen and Atkey, Robert and Komendantskaya, Ekaterina and Slusarz, Natalia and Arnaboldi, Luca},
  title =	{{Vehicle: Bridging the Embedding Gap in the Verification of Neuro-Symbolic Programs}},
  booktitle =	{10th International Conference on Formal Structures for Computation and Deduction (FSCD 2025)},
  pages =	{2:1--2:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-374-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{337},
  editor =	{Fern\'{a}ndez, Maribel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSCD.2025.2},
  URN =		{urn:nbn:de:0030-drops-236172},
  doi =		{10.4230/LIPIcs.FSCD.2025.2},
  annote =	{Keywords: Neural Network Verification, Types, Interactive Theorem Provers}
}
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