48 Search Results for "Cook, James"

Document
DOI: 10.4230/LIPIcs.STACS.2026.25
Homomorphism Indistinguishability, Multiplicity Automata Equivalence, and Polynomial Identity Testing

Authors: Marek Černý and Tim Seppelt

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
Two graphs G and H are homomorphism indistinguishable over a graph class ℱ if they admit the same number of homomorphisms from every graph F ∈ ℱ. Many graph isomorphism relaxations such as (quantum) isomorphism and cospectrality can be characterised as homomorphism indistinguishability over specific graph classes. Thereby, the problems HomInd(ℱ) of deciding homomorphism indistinguishability over ℱ subsume diverse graph isomorphism relaxations whose complexities range from logspace to undecidable. Establishing the first general result on the complexity of HomInd(ℱ), Seppelt (MFCS 2024) showed that HomInd(ℱ) is in randomised polynomial time for every graph class ℱ of bounded treewidth that can be defined in counting monadic second-order logic CMSO₂. We show that this algorithm is conditionally optimal, i.e. it cannot be derandomised unless polynomial identity testing is in P. For CMSO₂-definable graph classes ℱ of bounded pathwidth, we improve the previous complexity upper bound for HomInd(ℱ) from P to C_ = L and show that this is tight. Secondarily, we establish a connection between homomorphism indistinguishability and multiplicity automata equivalence which allows us to pinpoint the complexity of the latter problem as C_ = L-complete.
Cite as

Marek Černý and Tim Seppelt. Homomorphism Indistinguishability, Multiplicity Automata Equivalence, and Polynomial Identity Testing. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 25:1-25:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cerny_et_al:LIPIcs.STACS.2026.25,
  author =	{\v{C}ern\'{y}, Marek and Seppelt, Tim},
  title =	{{Homomorphism Indistinguishability, Multiplicity Automata Equivalence, and Polynomial Identity Testing}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{25:1--25:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.25},
  URN =		{urn:nbn:de:0030-drops-255144},
  doi =		{10.4230/LIPIcs.STACS.2026.25},
  annote =	{Keywords: treewidth, Courcelle’s theorem, logspace, multiplicity automata, polynomial identity testing}
}
Document
DOI: 10.4230/LIPIcs.STACS.2026.41
On the Complexity of Computing Strahler Numbers

Authors: Moses Ganardi and Markus Lohrey

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
It is shown that the problem of computing the Strahler number of a binary tree given as a term is complete for the circuit complexity class uniform NC¹. For several variants, where the binary tree is given by a pointer structure or in a succinct form by a directed acyclic graph or a tree straight-line program, the complexity of computing the Strahler number is determined as well. The problem, whether a given context-free grammar in Chomsky normal form produces a derivation tree (resp., an acyclic derivation tree), whose Strahler number is at least a given number k is shown to be P-complete (resp., PSPACE-complete).
Cite as

Moses Ganardi and Markus Lohrey. On the Complexity of Computing Strahler Numbers. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 41:1-41:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{ganardi_et_al:LIPIcs.STACS.2026.41,
  author =	{Ganardi, Moses and Lohrey, Markus},
  title =	{{On the Complexity of Computing Strahler Numbers}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{41:1--41:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.41},
  URN =		{urn:nbn:de:0030-drops-255301},
  doi =		{10.4230/LIPIcs.STACS.2026.41},
  annote =	{Keywords: Strahler number, circuit complexity classes, context-free grammars}
}
Document
DOI: 10.4230/LIPIcs.CSL.2026.16
On the Entailment Problem in Dynamic Separation Logic with Inductive Definitions

Authors: Nicolas Peltier

Published in: LIPIcs, Volume 363, 34th EACSL Annual Conference on Computer Science Logic (CSL 2026)

Abstract
Separation Logic (SL) is a well-established framework for reasoning about programs that manipulate dynamic memory. To express and verify properties of custom recursive data structures, SL is extended with spatial predicates defined by user-specified inductive rules. Many verification problems reduce to deciding entailments between formulas involving these predicates. While the general entailment problem is undecidable, a broad class of inductive rules - known as PCE (Progressing, Connected, and Established) - has been identified for which entailment is decidable. In this work, we extend the study of the entailment problem to Dynamic Separation Logic (DSL), an extension of SL that includes dynamic modalities for reasoning about actions on the heap and store. We show that entailment in DSL remains decidable for PCE rules by proving that dynamic modalities can be automatically eliminated.
Cite as

Nicolas Peltier. On the Entailment Problem in Dynamic Separation Logic with Inductive Definitions. In 34th EACSL Annual Conference on Computer Science Logic (CSL 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 363, pp. 16:1-16:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{peltier:LIPIcs.CSL.2026.16,
  author =	{Peltier, Nicolas},
  title =	{{On the Entailment Problem in Dynamic Separation Logic with Inductive Definitions}},
  booktitle =	{34th EACSL Annual Conference on Computer Science Logic (CSL 2026)},
  pages =	{16:1--16:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-411-6},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{363},
  editor =	{Guerrini, Stefano and K\"{o}nig, Barbara},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2026.16},
  URN =		{urn:nbn:de:0030-drops-254402},
  doi =		{10.4230/LIPIcs.CSL.2026.16},
  annote =	{Keywords: Separation logic, Dynamic logic, Entailment problem}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.43
Efficient Catalytic Graph Algorithms

Authors: James Cook and Edward Pyne

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We give fast, simple, and implementable catalytic logspace algorithms for two fundamental graph problems. First, a randomized catalytic algorithm for s → t connectivity running in Õ(nm) time, and a deterministic catalytic algorithm for the same running in Õ(n³ m) time. The former algorithm is the first algorithmic use of randomization in CL. The algorithm uses one register per vertex and repeatedly "pushes" values along the edges in the graph. Second, a deterministic catalytic algorithm for simulating random walks which in Õ(m T² / ε) time estimates the probability a T-step random walk ends at a given vertex within ε additive error. The algorithm uses one register for each vertex and increments it at each visit to ensure repeated visits follow different outgoing edges. Prior catalytic algorithms for both problems did not have explicit runtime bounds beyond being polynomial in n.
Cite as

James Cook and Edward Pyne. Efficient Catalytic Graph Algorithms. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 43:1-43:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{cook_et_al:LIPIcs.ITCS.2026.43,
  author =	{Cook, James and Pyne, Edward},
  title =	{{Efficient Catalytic Graph Algorithms}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{43:1--43:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.43},
  URN =		{urn:nbn:de:0030-drops-253305},
  doi =		{10.4230/LIPIcs.ITCS.2026.43},
  annote =	{Keywords: catalytic computing, graph algorithms, catalytic logspace}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.79
Range Avoidance and Remote Point: New Algorithms and Hardness

Authors: Shengtang Huang, Xin Li, and Yan Zhong

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
The Range Avoidance (Avoid) problem C-Avoid[n,m(n)] asks that, given a circuit in a class C with input length n and output length m(n) > n, find a string not in the range of the circuit. This problem has been a central piece in several recent frameworks for proving circuit lower bounds and constructing explicit combinatorial objects. Previous work by Korten (FOCS' 21) and by Ren, Santhanam, and Wang (FOCS' 22) showed that algorithms for Avoid are closely related to circuit lower bounds. In particular, Korten’s work reinterpreted an earlier result from bounded arithmetic, originally proved by Jeřábek (Ann. Pure Appl. Log. 2004), as an equivalence in computational complexity between the existence of FP^NP algorithms for the general Avoid problem and 2^{Ω(n)} lower bounds against general Boolean circuits for the class 𝐄^NP. In this work, we significantly complement these works by generalizing the equivalence result to restricted circuit classes and obtain the following: - For any constant depth unbounded fan-in circuit class C ⊇ AC⁰, there is an FP^NP algorithm for C-Avoid[n,n^{1+ε}] (for any constant ε > 0) if and only if 𝐄^NP cannot be computed by C circuits of size 2^{o(n)}. This addresses an open problem by Korten (Bulletin of EATCS' 25). - If 𝐄^NP cannot be computed by o(2ⁿ/n) size formulas, then there is an FP^NP algorithm for NC⁰-Avoid[n,2n]. Note that by an extension of Ren, Santhanam, and Wang (FOCS' 22), an FP^NP algorithm for NC⁰₄-Avoid[n,n+n^δ] for any constant δ ∈ (0,1) implies 𝐄^NP cannot be computed by o(2ⁿ/n) size formulas. These results yield the first characterizations of FP^NP C-Avoid algorithms for low-complexity circuit classes such as AC⁰. We also consider the average-case analog of Avoid, the Remote Point (Remote-Point) problem, and establish: - For some suitable function c(n) and constant γ > 0, there is an FP^NP algorithm for Remote-Point[n,n^{6+γ},c(O_{γ}(log n))] if and only if 𝐄^NP cannot be (1/2-c(n))-approximated by circuits of size 2^{o(n)}. Finally, we also present two improved algorithms for NC⁰-Avoid: - A family of 2^{n^{1 - ε/(k-1) +o(1)}} time algorithms for NC⁰_k-Avoid[n,n^{1+ε}] for any ε > 0, exhibiting the first subexponential-time algorithm for any super-linear stretch. - Faster local algorithms for NC⁰_k-Avoid[n,n+1] running in time O(n2^{(k-2)/(k-1) n}), improving the naive 2ⁿ⋅ poly(n) bound.
Cite as

Shengtang Huang, Xin Li, and Yan Zhong. Range Avoidance and Remote Point: New Algorithms and Hardness. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 79:1-79:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{huang_et_al:LIPIcs.ITCS.2026.79,
  author =	{Huang, Shengtang and Li, Xin and Zhong, Yan},
  title =	{{Range Avoidance and Remote Point: New Algorithms and Hardness}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{79:1--79:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.79},
  URN =		{urn:nbn:de:0030-drops-253662},
  doi =		{10.4230/LIPIcs.ITCS.2026.79},
  annote =	{Keywords: Circuit Lower Bounds, Range Avoidance Problem, Remote Point Problem}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.60
Total Search Problems in ZPP

Authors: Noah Fleming, Stefan Grosser, Siddhartha Jain, Jiawei Li, Hanlin Ren, Morgan Shirley, and Weiqiang Yuan

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
We initiate a systematic study of TFZPP, the class of total NP search problems solvable by polynomial time randomized algorithms. TFZPP contains a variety of important search problems such as Bertrand-Chebyshev (finding a prime between N and 2N), refuter problems for many circuit lower bounds, and Lossy-Code. The Lossy-Code problem has found prominence due to its fundamental connections to derandomization, catalytic computing, and the metamathematics of complexity theory, among other areas. While TFZPP collapses to FP under standard derandomization assumptions in the white-box setting, we are able to separate TFZPP from the major TFNP subclasses in the black-box setting. In fact, we are able to separate it from every uniform TFNP class assuming that NP is not in quasi-polynomial time. To do so, we extend the connection between proof complexity and black-box TFNP to randomized proof systems and randomized reductions. Next, we turn to developing a taxonomy of TFZPP problems. We highlight a problem called Nephew, originating from an infinity axiom in set theory. We show that Nephew is in PWPP∩ TFZPP and conjecture that it is not reducible to Lossy-Code. Intriguingly, except for some artificial examples, most other black-box TFZPP problems that we are aware of reduce to Lossy-Code: - We define a problem called Empty-Child capturing finding a leaf in a rooted (binary) tree, and show that this problem is equivalent to Lossy-Code. We also show that a variant of Empty-Child with "heights" is complete for the intersection of SOPL and Lossy-Code. - We strengthen Lossy-Code with several combinatorial inequalities such as the AM-GM inequality. Somewhat surprisingly, we show the resulting new problems are still reducible to Lossy-Code. A technical highlight of this result is that they are proved by formalizations in bounded arithmetic, specifically in Jeřábek’s theory APC₁ (JSL 2007). - Finally, we show that the Dense-Linear-Ordering problem reduces to Lossy-Code.
Cite as

Noah Fleming, Stefan Grosser, Siddhartha Jain, Jiawei Li, Hanlin Ren, Morgan Shirley, and Weiqiang Yuan. Total Search Problems in ZPP. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 60:1-60:26, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{fleming_et_al:LIPIcs.ITCS.2026.60,
  author =	{Fleming, Noah and Grosser, Stefan and Jain, Siddhartha and Li, Jiawei and Ren, Hanlin and Shirley, Morgan and Yuan, Weiqiang},
  title =	{{Total Search Problems in ZPP}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{60:1--60:26},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.60},
  URN =		{urn:nbn:de:0030-drops-253473},
  doi =		{10.4230/LIPIcs.ITCS.2026.60},
  annote =	{Keywords: TFNP, lossy code, randomized proof systems, query complexity}
}
Document
DOI: 10.4230/LIPIcs.ITCS.2026.3
Linear Matroid Intersection Is in Catalytic Logspace

Authors: Aryan Agarwala, Yaroslav Alekseev, and Antoine Vinciguerra

Published in: LIPIcs, Volume 362, 17th Innovations in Theoretical Computer Science Conference (ITCS 2026)

Abstract
Linear matroid intersection is an important problem in combinatorial optimization. Given two linear matroids over the same ground set, the linear matroid intersection problem asks you to find a common independent set of maximum size. The deep interest in linear matroid intersection is due to the fact that it generalises many classical problems in theoretical computer science, such as bipartite matching, edge disjoint spanning trees, rainbow spanning tree, and many more. We study this problem in the model of catalytic computation: space-bounded machines are granted access to catalytic space, which is additional working memory that is full with arbitrary data that must be preserved at the end of its computation. Although linear matroid intersection has had a polynomial time algorithm for over 50 years, it remains an important open problem to show that linear matroid intersection belongs to any well studied subclass of {P}. We address this problem for the class catalytic logspace (CL) with a polynomial time bound (CLP). Recently, Agarwala and Mertz (2025) showed that bipartite maximum matching can be computed in the class CLP ⊆ {P}. This was the first subclass of {P} shown to contain bipartite matching, and additionally the first problem outside TC¹ shown to be contained in CL. We significantly improve the result of Agarwala and Mertz by showing that linear matroid intersection can be computed in CLP.
Cite as

Aryan Agarwala, Yaroslav Alekseev, and Antoine Vinciguerra. Linear Matroid Intersection Is in Catalytic Logspace. In 17th Innovations in Theoretical Computer Science Conference (ITCS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 362, pp. 3:1-3:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{agarwala_et_al:LIPIcs.ITCS.2026.3,
  author =	{Agarwala, Aryan and Alekseev, Yaroslav and Vinciguerra, Antoine},
  title =	{{Linear Matroid Intersection Is in Catalytic Logspace}},
  booktitle =	{17th Innovations in Theoretical Computer Science Conference (ITCS 2026)},
  pages =	{3:1--3:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-410-9},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{362},
  editor =	{Saraf, Shubhangi},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2026.3},
  URN =		{urn:nbn:de:0030-drops-252908},
  doi =		{10.4230/LIPIcs.ITCS.2026.3},
  annote =	{Keywords: Catalytic Computing, Computational Complexity, Matroid Theory, Algorithms}
}
Document
DOI: 10.4230/LIPIcs.FSTTCS.2025.42
Degrees of Second and Higher-Order Polynomials

Authors: Donghyun Lim and Martin Ziegler

Published in: LIPIcs, Volume 360, 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)

Abstract
Second-order polynomials generalize classical (=first-order) ones in allowing for additional variables that range over functions rather than values. We are motivated by their applications in higher-order computational complexity theory, extending for instance discrete classes (like P/FP or PSPACE/FPSPACE) to operators in Analysis [http://doi.org/10.1137/S0097539794263452], [http://doi.org/10.1145/2189778.2189780]. The degree subclassifies ordinary polynomial growth into linear, quadratic, cubic, etc. To similarly classify second-order polynomials, we (well-)define their degree by structural induction as an "arctic" first-order polynomial: a term/expression over integer variable D and operations + and ⋅ and binary max(). This generalized degree turns out to transform nicely under (now two kinds of) polynomial composition. As examples, we collect and determine the degrees of previous and new asymptotic analyses of algorithms and operators receiving function/oracle arguments. Then we motivate and introduce third-order polynomials and their degrees as arctic second-order polynomials, along with their transformations under three kinds of composition. Proceeding to fourth order and beyond yields a hierarchy, with characterization in Simply Typed Lambda Calculus.
Cite as

Donghyun Lim and Martin Ziegler. Degrees of Second and Higher-Order Polynomials. In 45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 360, pp. 42:1-42:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{lim_et_al:LIPIcs.FSTTCS.2025.42,
  author =	{Lim, Donghyun and Ziegler, Martin},
  title =	{{Degrees of Second and Higher-Order Polynomials}},
  booktitle =	{45th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2025)},
  pages =	{42:1--42:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-406-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{360},
  editor =	{Aiswarya, C. and Mehta, Ruta and Roy, Subhajit},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2025.42},
  URN =		{urn:nbn:de:0030-drops-251225},
  doi =		{10.4230/LIPIcs.FSTTCS.2025.42},
  annote =	{Keywords: Logic in Computer Science, Higher Order Program Analysis, Asymptotic Type Theory}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.7
Polynomial Equivalence of Extended Chemical Reaction Models

Authors: Divya Bajaj, Jose-Luis Castellanos, Ryan Knobel, Austin Luchsinger, Aiden Massie, Adrian Salinas, Pablo Santos, Ramiro Santos, Robert Schweller, and Tim Wylie

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
The ability to detect whether a species (or dimension) is zero in Chemical Reaction Networks (CRN), Vector Addition Systems, or Petri Nets is known to increase the power of these models - making them capable of universal computation. While this ability may appear in many forms, such as extending the models to allow transitions to be inhibited, prioritized, or synchronized, we present an extension that directly performs this zero checking. We introduce a new void genesis CRN variant with a simple design that merely increments the count of a specific species when any other species' count goes to zero. As with previous extensions, we show that the model is Turing Universal. We then analyze several other studied CRN variants and show that they are all equivalent through a polynomial simulation with the void genesis model, which does not merely follow from Turing-universality. Thus, inhibitor species, reactions that occur at different rates, being allowed to run reactions in parallel, or even being allowed to continually add more volume to the CRN, does not add additional simulation power beyond simply detecting if a species count becomes zero.
Cite as

Divya Bajaj, Jose-Luis Castellanos, Ryan Knobel, Austin Luchsinger, Aiden Massie, Adrian Salinas, Pablo Santos, Ramiro Santos, Robert Schweller, and Tim Wylie. Polynomial Equivalence of Extended Chemical Reaction Models. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 7:1-7:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bajaj_et_al:LIPIcs.ISAAC.2025.7,
  author =	{Bajaj, Divya and Castellanos, Jose-Luis and Knobel, Ryan and Luchsinger, Austin and Massie, Aiden and Salinas, Adrian and Santos, Pablo and Santos, Ramiro and Schweller, Robert and Wylie, Tim},
  title =	{{Polynomial Equivalence of Extended Chemical Reaction Models}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{7:1--7:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.7},
  URN =		{urn:nbn:de:0030-drops-249158},
  doi =		{10.4230/LIPIcs.ISAAC.2025.7},
  annote =	{Keywords: Chemical Reaction Networks, Simulations, Petri-nets, Vector Addition Systems, Bi-simulation, Turing-universality, Inhibitors}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.9
Small Space Encoding and Recognition of k-Palindromic Prefixes

Authors: Gabriel Bathie, Jonas Ellert, and Tatiana Starikovskaya

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
Palindromes are non-empty strings that read the same forward and backward. We study the problem of recognizing so-called k-palindromic strings, which can be represented as the concatenation of exactly k palindromes. [Rubinchik and Shur, MFCS 2020] showed that the problem is solvable in linear space and time. We present a read-only algorithm that recognizes all k-palindromic prefixes of a string T of length n in O(n ⋅ 6^{k²} ⋅ log^k n) time and O(6^{k²} ⋅ log^k n) space. As a corollary, we also obtain a read-only algorithm for computing the palindromic length of T, i.e., the smallest k such that T is k-palindromic, in O(n ⋅ 6^{k²} ⋅ log^⌈k/2⌉ n) time and O(6^{k²} ⋅ log^⌈k/2⌉ n) space.
Cite as

Gabriel Bathie, Jonas Ellert, and Tatiana Starikovskaya. Small Space Encoding and Recognition of k-Palindromic Prefixes. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 9:1-9:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bathie_et_al:LIPIcs.ISAAC.2025.9,
  author =	{Bathie, Gabriel and Ellert, Jonas and Starikovskaya, Tatiana},
  title =	{{Small Space Encoding and Recognition of k-Palindromic Prefixes}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{9:1--9:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.9},
  URN =		{urn:nbn:de:0030-drops-249178},
  doi =		{10.4230/LIPIcs.ISAAC.2025.9},
  annote =	{Keywords: palindromic length, read-only algorithms, palindromes}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.15
Parameterized Complexity of Directed Traveling Salesman Problem

Authors: Václav Blažej, Andreas Emil Feldmann, Foivos Fioravantes, Paweł Rzążewski, and Ondřej Suchý

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
The Directed Traveling Salesman Problem (DTSP) is a variant of the classical Traveling Salesman Problem in which the edges in the graph are directed and a vertex and edge can be visited multiple times. The goal is to find a directed closed walk of minimum length (or total weight) that visits every vertex of the given graph at least once. In a yet more general version, Directed Waypoint Routing Problem (DWRP), some vertices are marked as terminals and we are only required to visit all terminals. Furthermore, each edge has its capacity bounding the number of times this edge can be used by a solution. While both problems (and many other variants of TSP) were extensively investigated, mostly from the approximation point of view, there are surprisingly few results concerning the parameterized complexity. Our starting point is the result of Marx et al. [APPROX/RANDOM 2016] who proved that DTSP is W[1]-hard parameterized by distance to pathwidth 3. In this paper we aim to initiate the systematic complexity study of variants of Directed Traveling Salesman Problem with respect to various, mostly structural, parameters. We show that DWRP is FPT parameterized by the solution size, the feedback edge number and the vertex integrity of the underlying undirected graph. Furthermore, the problem is XP parameterized by treewidth. On the complexity side, we show that the problem is W[1]-hard parameterized by the distance to constant treedepth.
Cite as

Václav Blažej, Andreas Emil Feldmann, Foivos Fioravantes, Paweł Rzążewski, and Ondřej Suchý. Parameterized Complexity of Directed Traveling Salesman Problem. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 15:1-15:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{blazej_et_al:LIPIcs.ISAAC.2025.15,
  author =	{Bla\v{z}ej, V\'{a}clav and Feldmann, Andreas Emil and Fioravantes, Foivos and Rz\k{a}\.{z}ewski, Pawe{\l} and Such\'{y}, Ond\v{r}ej},
  title =	{{Parameterized Complexity of Directed Traveling Salesman Problem}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{15:1--15:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.15},
  URN =		{urn:nbn:de:0030-drops-249231},
  doi =		{10.4230/LIPIcs.ISAAC.2025.15},
  annote =	{Keywords: Directed TSP, parameterized complexity, vertex integrity, treedepth}
}
Document
DOI: 10.4230/LIPIcs.GD.2025.21
On Geometric Bipartite Graphs with Asymptotically Smallest Zarankiewicz Numbers

Authors: Parinya Chalermsook, Ly Orgo, and Minoo Zarsav

Published in: LIPIcs, Volume 357, 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)

Abstract
This paper considers the Zarankiewicz problem in bipartite graphs with low-dimensional geometric representation (i.e., low Ferrers dimension). Let Z(n;k) be the maximum number of edges in a bipartite graph with n nodes and is free of a k-by-k biclique. Note that Z(n;k) ∈ Ω(nk) for all "natural" graph classes. Our first result reveals a separation between bipartite graphs of Ferrers dimension three and four: while we show that Z(n;k) ≤ 9n(k-1) for graphs of Ferrers dimension three, Z(n;k) ∈ Ω(n k ⋅ (log n)/(log log n)) for Ferrers dimension four graphs (Chan & Har-Peled, 2023) (Chazelle, 1990). To complement this, we derive a tight upper bound of 2n(k-1) for chordal bipartite graphs and 54n(k-1) for grid intersection graphs (GIG), a prominent graph class residing in four Ferrers dimensions and capturing planar bipartite graphs as well as bipartite intersection graphs of rectangles. Previously, the best-known bound for GIG was Z(n;k) ∈ O(2^{O(k)} n), implied by the results of Fox & Pach (2006) and Mustafa & Pach (2016). Our results advance and offer new insights into the interplay between Ferrers dimensions and extremal combinatorics.
Cite as

Parinya Chalermsook, Ly Orgo, and Minoo Zarsav. On Geometric Bipartite Graphs with Asymptotically Smallest Zarankiewicz Numbers. In 33rd International Symposium on Graph Drawing and Network Visualization (GD 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 357, pp. 21:1-21:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chalermsook_et_al:LIPIcs.GD.2025.21,
  author =	{Chalermsook, Parinya and Orgo, Ly and Zarsav, Minoo},
  title =	{{On Geometric Bipartite Graphs with Asymptotically Smallest Zarankiewicz Numbers}},
  booktitle =	{33rd International Symposium on Graph Drawing and Network Visualization (GD 2025)},
  pages =	{21:1--21:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-403-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{357},
  editor =	{Dujmovi\'{c}, Vida and Montecchiani, Fabrizio},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GD.2025.21},
  URN =		{urn:nbn:de:0030-drops-250074},
  doi =		{10.4230/LIPIcs.GD.2025.21},
  annote =	{Keywords: Bipartite graph classes, extremal graph theory, geometric intersection graphs, Zarankiewicz problem, bicliques}
}
Document
DOI: 10.4230/LIPIcs.DISC.2025.18
Complexity Landscape for Local Certification

Authors: Nicolas Bousquet, Laurent Feuilloley, and Sébastien Zeitoun

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)

Abstract
An impressive recent line of work has charted the complexity landscape of distributed graph algorithms. For many settings, it has been determined which time complexities exist, and which do not (in the sense that no local problem could have an optimal algorithm with that complexity). In this paper, we initiate the study of the landscape for space complexity of distributed graph algorithms. More precisely, we focus on the local certification setting, where a prover assigns certificates to nodes to certify a property, and where the space complexity is measured by the size of the certificates. Already for anonymous paths and cycles, we unveil a surprising landscape: - There is a gap between complexity O(1) and Θ(log log n) in paths. This is the first gap established in local certification. - There exists a property that has complexity Θ(log log n) in paths, a regime that was not known to exist for a natural property. - There is a gap between complexity O(1) and Θ(log n) in cycles, hence a gap that is exponentially larger than for paths. We then generalize our result for paths to the class of trees. Namely, we show that there is a gap between complexity O(1) and Θ(log log d) in trees, where d is the diameter. We finally describe some settings where there are no gaps at all. To prove our results we develop a new toolkit, based on various results of automata theory and arithmetic, which is of independent interest.
Cite as

Nicolas Bousquet, Laurent Feuilloley, and Sébastien Zeitoun. Complexity Landscape for Local Certification. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 18:1-18:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bousquet_et_al:LIPIcs.DISC.2025.18,
  author =	{Bousquet, Nicolas and Feuilloley, Laurent and Zeitoun, S\'{e}bastien},
  title =	{{Complexity Landscape for Local Certification}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{18:1--18:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.18},
  URN =		{urn:nbn:de:0030-drops-248350},
  doi =		{10.4230/LIPIcs.DISC.2025.18},
  annote =	{Keywords: Local certification, proof-labeling schemes, locally checkable proofs, space complexity, distributed graph algorithms, complexity gap}
}
Document
Brief Announcement
DOI: 10.4230/LIPIcs.DISC.2025.62
Brief Announcement: Time, Fences and the Ordering of Events in TSO

Authors: Raïssa Nataf and Yoram Moses

Published in: LIPIcs, Volume 356, 39th International Symposium on Distributed Computing (DISC 2025)

Abstract
Total Store Order (TSO) is one of the most popular relaxed memory model in multiprocessor architectures, widely implemented, for example, in Intel’s x86 and x64 platforms. It delays write visibility via store buffers, thereby allowing a significant improvement in efficiency. This, however, complicates reasoning about correctness, as executions may violate sequential consistency. We present a semantic framework that provides effective tools that can pinpoint when such synchronization is necessary under TSO. We define a TSO-specific occurs-before relation, adapting Lamport’s happens-before to TSO, and prove that events at different sites can be temporally ordered only via an occurs-before chain. Analyzing how fences and RMWs create these chains lets us identify when they are unavoidable. We present in this BA how these results impact linearizable implementations of registers, capturing information flow and causality in TSO. The full version of this work provides details as well as results regarding the need for synchronization in linearizable implementations of additional objects.
Cite as

Raïssa Nataf and Yoram Moses. Brief Announcement: Time, Fences and the Ordering of Events in TSO. In 39th International Symposium on Distributed Computing (DISC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 356, pp. 62:1-62:7, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{nataf_et_al:LIPIcs.DISC.2025.62,
  author =	{Nataf, Ra\"{i}ssa and Moses, Yoram},
  title =	{{Brief Announcement: Time, Fences and the Ordering of Events in TSO}},
  booktitle =	{39th International Symposium on Distributed Computing (DISC 2025)},
  pages =	{62:1--62:7},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-402-4},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{356},
  editor =	{Kowalski, Dariusz R.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2025.62},
  URN =		{urn:nbn:de:0030-drops-248784},
  doi =		{10.4230/LIPIcs.DISC.2025.62},
  annote =	{Keywords: TSO, linearizability, happens before, fences, synchronization actions}
}
Document
Research
DOI: 10.4230/TGDK.3.2.3
GraphRAG on Technical Documents - Impact of Knowledge Graph Schema

Authors: Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke

Published in: TGDK, Volume 3, Issue 2 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 2

Abstract
Retrieval Augmented Generation (RAG) is seeing rapid adoption in industry to enable employees to query information captured in proprietary data for their organisation. In this work, we test the impact of domain-relevant knowledge graph schemas on the results of Microsoft’s GraphRAG pipeline. Our approach aims to address the poor quality of GraphRAG responses on technical reports rich in domain-specific terms. The use case involves technical reports about geology, chemistry and mineral processing published by the Minerals Research Institute of Western Australia (MRIWA). Four schemas are considered: a simple five-class minerals domain expert-developed schema, an expanded minerals domain schema, the Microsoft GraphRAG auto-generated schema, and a schema-less GraphRAG. These are compared to a conventional baseline RAG. Performance is evaluated using a scoring approach that accounts for the mix of correct, incorrect, additional, and missing content in RAG responses. The results show that the simple five-class minerals domain schema extracts approximately 10% more entities from the MRIWA reports than the other schema options. Additionally, both the five-class and the expanded eight-class minerals domain schemas produce the most factually correct answers and the fewest hallucinations. We attribute this to the minerals-specific schemas extracting more relevant, domain-specific information during the Indexing stage. As a result, the Query stage’s context window includes more high-value content. This contributes to the observed improvement in answer quality compared to the other pipelines. In contrast, pipelines with fewer domain-related entities in the KG retrieve less valuable information, leaving more room for irrelevant content in the context window. Baseline RAG responses were typically shorter, less complete, and contained more hallucinations compared to our GraphRAG pipelines. We provide a complete set of resources at https://github.com/nlp-tlp/GraphRAG-on-Minerals-Domain/tree/main. These resources include links to the MRIWA reports, a set of questions (from simple to challenging) along with domain-expert curated answers, schemas, and evaluations of the pipelines.
Cite as

Henri Scaffidi, Melinda Hodkiewicz, Caitlin Woods, and Nicole Roocke. GraphRAG on Technical Documents - Impact of Knowledge Graph Schema. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 2, pp. 3:1-3:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{scaffidi_et_al:TGDK.3.2.3,
  author =	{Scaffidi, Henri and Hodkiewicz, Melinda and Woods, Caitlin and Roocke, Nicole},
  title =	{{GraphRAG on Technical Documents - Impact of Knowledge Graph Schema}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{3:1--3:24},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{2},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.2.3},
  URN =		{urn:nbn:de:0030-drops-248131},
  doi =		{10.4230/TGDK.3.2.3},
  annote =	{Keywords: RAG, minerals, local search, global search, entity extraction, competency questions}
}
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