23 Search Results for "Kent, Robert E."

Document
Research
DOI: 10.4230/TGDK.3.3.4
Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web

Authors: Florian Ruosch, Cristina Sarasua, and Abraham Bernstein

Published in: TGDK, Volume 3, Issue 3 (2025). Transactions on Graph Data and Knowledge, Volume 3, Issue 3

Abstract
In Argument Mining, predicting argumentative relations between texts (or spans) remains one of the most challenging aspects, even more so in the cross-document setting. This paper makes three key contributions to advance research in this domain. We first extend an existing dataset, the Sci-Arg corpus, by annotating it with explicit inter-document argumentative relations, thereby allowing arguments to be distributed over several documents forming an Argument Web; these new annotations are published using Semantic Web technologies (RDF, OWL). Second, we explore and evaluate three automated approaches for predicting these inter-document argumentative relations, establishing critical baselines on the new dataset. We find that a simple classifier based on discourse indicators with access to context outperforms neural methods. Third, we conduct a comparative analysis of these approaches for both intra- and inter-document settings, identifying statistically significant differences in results that indicate the necessity of distinguishing between these two scenarios. Our findings highlight significant challenges in this complex domain and open crucial avenues for future research on the Argument Web of Science, particularly for those interested in leveraging Semantic Web technologies and knowledge graphs to understand scholarly discourse. With this, we provide the first stepping stones in the form of a benchmark dataset, three baseline methods, and an initial analysis for a systematic exploration of this field relevant to the Web of Data and Science.
Cite as

Florian Ruosch, Cristina Sarasua, and Abraham Bernstein. Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web. In Transactions on Graph Data and Knowledge (TGDK), Volume 3, Issue 3, pp. 4:1-4:33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@Article{ruosch_et_al:TGDK.3.3.4,
  author =	{Ruosch, Florian and Sarasua, Cristina and Bernstein, Abraham},
  title =	{{Mining Inter-Document Argument Structures in Scientific Papers for an Argument Web}},
  journal =	{Transactions on Graph Data and Knowledge},
  pages =	{4:1--4:33},
  ISSN =	{2942-7517},
  year =	{2025},
  volume =	{3},
  number =	{3},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/TGDK.3.3.4},
  URN =		{urn:nbn:de:0030-drops-252159},
  doi =		{10.4230/TGDK.3.3.4},
  annote =	{Keywords: Argument Mining, Large Language Models, Knowledge Graphs, Link Prediction}
}
Document
Short Paper
DOI: 10.4230/LIPIcs.TIME.2025.20
Temporal Considerations in DJ Mix Information Retrieval and Generation (Short Paper)

Authors: Alexander Williams, Gregor Meehan, Stefan Lattner, Johan Pauwels, and Mathieu Barthet

Published in: LIPIcs, Volume 355, 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)

Abstract
Music is the art of arranging sounds in time so as to produce a continuous, unified, and evocative composition. Electronic dance music (EDM) is a collection of musical sub-genres produced using computers and electronic instruments and often presented through the medium of DJing, where tracks are curated and mixed sequentially into a continuous stream of music to offer unique listening and dancing experiences over time periods ranging from several minutes to several hours. A DJ’s actions and decisions occur at several levels of temporal granularity, from real-time audio manipulation (e.g. of tempo) for smooth inter-track transitions to long-term planning of track selection and sequencing for mix content and flow. While human DJs can instinctively operate across these different temporal resolutions, replicating this capability in an end-to-end automated DJing system presents significant challenges. In this paper, we analyse existing works in DJ mix information retrieval and generation from this temporal perspective. We first explain the close link between DJing and the temporal notion of musical rhythm, then describe a framework for categorising DJing actions by temporal granularity. Using this framework, we summarise and contrast potential approaches for automating and augmenting sequential DJ decision making, and discuss the unique characteristics of DJ mix track selection as a sequential recommendation task. In doing so, we hope to facilitate the implementation of more robust and complete automated DJing systems in future research.
Cite as

Alexander Williams, Gregor Meehan, Stefan Lattner, Johan Pauwels, and Mathieu Barthet. Temporal Considerations in DJ Mix Information Retrieval and Generation (Short Paper). In 32nd International Symposium on Temporal Representation and Reasoning (TIME 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 355, pp. 20:1-20:8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{williams_et_al:LIPIcs.TIME.2025.20,
  author =	{Williams, Alexander and Meehan, Gregor and Lattner, Stefan and Pauwels, Johan and Barthet, Mathieu},
  title =	{{Temporal Considerations in DJ Mix Information Retrieval and Generation}},
  booktitle =	{32nd International Symposium on Temporal Representation and Reasoning (TIME 2025)},
  pages =	{20:1--20:8},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-401-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{355},
  editor =	{Vidal, Thierry and Wa{\l}\k{e}ga, Przemys{\l}aw Andrzej},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TIME.2025.20},
  URN =		{urn:nbn:de:0030-drops-244662},
  doi =		{10.4230/LIPIcs.TIME.2025.20},
  annote =	{Keywords: Music Information Retrieval, Computational Creativity, Recommender Systems, Electronic Dance Music, DJ}
}
Document
APPROX
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.2
Covering Simple Orthogonal Polygons with Rectangles

Authors: Aniket Basu Roy

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
We study the problem of Covering Orthogonal Polygons with Rectangles, focusing on three variants: covering the interior, the boundary, and the corners. While previous work provided constant-factor approximation algorithms for these problems, significant improvements had not been achieved for over two decades. The main contribution of this work is the development of a Polynomial Time Approximation Scheme (PTAS) for both the Boundary Cover and Corner Cover problems on simple polygons, using a local search algorithm. Our work advances the state of the art, improving upon the previous best-known 4-approximation for the Boundary Cover and 2-approximation for the Corner Cover problems. The technical core of our work lies in proving the existence of planar support graphs for certain geometric hypergraphs defined by the polygon and its containment-maximal rectangles. This structural insight enables the application of the local search framework to achieve the PTAS results. We also demonstrate the limitations of this approach by constructing instances where local search fails for the Interior Cover and certain dual problems, such as the Maximum Antirectangle and Hitting Set problems. Additionally, the methods yield a PTAS for a special case of the Discrete Independent Set problem for rectangles. These results not only settle longstanding open questions but also introduce new techniques that may be of independent interest within computational geometry.
Cite as

Aniket Basu Roy. Covering Simple Orthogonal Polygons with Rectangles. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 2:1-2:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{basuroy:LIPIcs.APPROX/RANDOM.2025.2,
  author =	{Basu Roy, Aniket},
  title =	{{Covering Simple Orthogonal Polygons with Rectangles}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{2:1--2:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.2},
  URN =		{urn:nbn:de:0030-drops-243686},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.2},
  annote =	{Keywords: Polygon Covering, Approximation Algorithms, Orthogonal Polygons, Rectangles, Local Search, Planar Supports}
}
Document
DOI: 10.4230/LIPIcs.TQC.2025.2
A Quantum Cloning Game with Applications to Quantum Position Verification

Authors: Léo Colisson Palais, Llorenç Escolà-Farràs, and Florian Speelman

Published in: LIPIcs, Volume 350, 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)

Abstract
We introduce a quantum cloning game in which k separate collaborative parties receive a classical input, determining which of them has to share a maximally entangled state with an additional party (referee). We provide the optimal winning probability of such a game for every number of parties k, and show that it decays exponentially when the game is played n times in parallel. These results have applications to quantum cryptography, in particular in the topic of quantum position verification, where we show security of the routing protocol (played in parallel), and a variant of it, in the random oracle model.
Cite as

Léo Colisson Palais, Llorenç Escolà-Farràs, and Florian Speelman. A Quantum Cloning Game with Applications to Quantum Position Verification. In 20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 350, pp. 2:1-2:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{colissonpalais_et_al:LIPIcs.TQC.2025.2,
  author =	{Colisson Palais, L\'{e}o and Escol\`{a}-Farr\`{a}s, Lloren\c{c} and Speelman, Florian},
  title =	{{A Quantum Cloning Game with Applications to Quantum Position Verification}},
  booktitle =	{20th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2025)},
  pages =	{2:1--2:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-392-8},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{350},
  editor =	{Fefferman, Bill},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.TQC.2025.2},
  URN =		{urn:nbn:de:0030-drops-240513},
  doi =		{10.4230/LIPIcs.TQC.2025.2},
  annote =	{Keywords: Quantum position verification, cloning game, random oracle, parallel repetition}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.14
Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms

Authors: Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
We introduce a quantum dynamic programming framework that allows us to directly extend to the quantum realm a large body of classical dynamic programming algorithms. The corresponding quantum dynamic programming algorithms retain the same space complexity as their classical counterpart, while achieving a computational speedup. For a combinatorial (search or optimization) problem P and an instance I of P, such a speedup can be expressed in terms of the average degree δ of the {dependency digraph} G_𝒫(I) of I, determined by a recursive formulation of P. The nodes of this graph are the subproblems of P induced by I and its arcs are directed from each subproblem to those on whose solution it relies. In particular, our framework allows us to solve the considered problems in Õ(|V(G_𝒫(I))| √δ) time. As an example, we obtain a quantum version of the Bellman-Ford algorithm for computing shortest paths from a single source vertex to all the other vertices in a weighted n-vertex digraph with m edges that runs in Õ(n√{nm}) time, which improves the best known classical upper bound when m ∈ Ω(n^{1.4}).
Cite as

Susanna Caroppo, Giordano Da Lozzo, Giuseppe Di Battista, Michael T. Goodrich, and Martin Nöllenburg. Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 14:1-14:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{caroppo_et_al:LIPIcs.WADS.2025.14,
  author =	{Caroppo, Susanna and Da Lozzo, Giordano and Di Battista, Giuseppe and Goodrich, Michael T. and N\"{o}llenburg, Martin},
  title =	{{Quantum Speedups for Polynomial-Time Dynamic Programming Algorithms}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{14:1--14:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.14},
  URN =		{urn:nbn:de:0030-drops-242454},
  doi =		{10.4230/LIPIcs.WADS.2025.14},
  annote =	{Keywords: Dynamic Programming, Quantum Algorithms, Quantum Random Access Memory}
}
Document
DOI: 10.4230/LIPIcs.WADS.2025.50
Deterministic (2/3 - ε)-Approximation of Matroid Intersection Using Nearly-Linear Independence-Oracle Queries

Authors: Tatsuya Terao

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract
In the matroid intersection problem, we are given two matroids ℳ₁ = (V, ℐ₁) and ℳ₂ = (V, ℐ₂) defined on the same ground set V of n elements, and the objective is to find a common independent set S ∈ ℐ₁ ∩ ℐ₂ of largest possible cardinality, denoted by r. In this paper, we consider a deterministic matroid intersection algorithm with only a nearly linear number of independence oracle queries. Our contribution is to present a deterministic O(n/(ε) + r log r)-independence-query (2/3-ε)-approximation algorithm for any ε > 0. Our idea is very simple: we apply a recent Õ(n √r/ε)-independence-query (1 - ε)-approximation algorithm of Blikstad [ICALP 2021], but terminate it before completion. Moreover, we also present a semi-streaming algorithm for (2/3 -ε)-approximation of matroid intersection in O(1/ε) passes.
Cite as

Tatsuya Terao. Deterministic (2/3 - ε)-Approximation of Matroid Intersection Using Nearly-Linear Independence-Oracle Queries. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 50:1-50:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{terao:LIPIcs.WADS.2025.50,
  author =	{Terao, Tatsuya},
  title =	{{Deterministic (2/3 - \epsilon)-Approximation of Matroid Intersection Using Nearly-Linear Independence-Oracle Queries}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{50:1--50:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.50},
  URN =		{urn:nbn:de:0030-drops-242812},
  doi =		{10.4230/LIPIcs.WADS.2025.50},
  annote =	{Keywords: Matroid intersection, approximation algorithm, streaming algorithm}
}
Document
DOI: 10.4230/LIPIcs.GIScience.2025.11
Georeferencing Historical Maps at Scale

Authors: Rere-No-A-Rangi Pope and Marcus Frean

Published in: LIPIcs, Volume 346, 13th International Conference on Geographic Information Science (GIScience 2025)

Abstract
This paper presents a novel approach to automatically georeferencing historical maps using an algorithm based on salient line intersections. Our algorithm addresses the challenges inherent in linking historical map images to contemporary cadastral data, particularly those due to temporal discrepancies, cartographic distortions, and map image noise. By extracting and comparing angular relationships between cadastral features, termed monads and dyads, we establish a robust method for performing record linkage by identifying corresponding spatial patterns across disparate datasets. We employ a Bayesian framework to quantify the likelihood of dyad matches corrupted by measurement noise. The algorithm’s performance was evaluated by selecting a map image and finding putative angle correspondences from the entirety of Aotearoa New Zealand. Even when restricted to a single dyad match, >99% of candidate regions can be successfully filtered out. We discuss the implications and limitations, and suggest strategies for further enhancing the algorithm’s robustness and efficiency. Our work is motivated by previous work in the areas of critical GIS, critical cartography and spatial justice and seeks to contribute to the areas of Spatial Data Science, Historical GIS and GIScience.
Cite as

Rere-No-A-Rangi Pope and Marcus Frean. Georeferencing Historical Maps at Scale. In 13th International Conference on Geographic Information Science (GIScience 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 346, pp. 11:1-11:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{pope_et_al:LIPIcs.GIScience.2025.11,
  author =	{Pope, Rere-No-A-Rangi and Frean, Marcus},
  title =	{{Georeferencing Historical Maps at Scale}},
  booktitle =	{13th International Conference on Geographic Information Science (GIScience 2025)},
  pages =	{11:1--11:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-378-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{346},
  editor =	{Sila-Nowicka, Katarzyna and Moore, Antoni and O'Sullivan, David and Adams, Benjamin and Gahegan, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.GIScience.2025.11},
  URN =		{urn:nbn:de:0030-drops-238400},
  doi =		{10.4230/LIPIcs.GIScience.2025.11},
  annote =	{Keywords: Historical GIS, Georeferencing, Record Linkage, Spatial Data Justice}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.10
DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs

Authors: Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Determining the distance between two loci within a genomic region is a recurrent operation in various tasks in computational genomics. A notable example of this task arises in paired-end read mapping as a form of validation of distances between multiple alignments. While straightforward for a single genome, graph-based reference structures render the operation considerably more involved. Given the sheer number of such queries in a typical read mapping experiment, an efficient algorithm for answering distance queries is crucial. In this paper, we introduce DiVerG, a compact data structure as well as a fast and scalable algorithm, for constructing distance indexes for general sequence graphs on multi-core CPU and many-core GPU architectures. DiVerG is based on PairG [Jain et al., 2019], but overcomes the limitations of PairG by exploiting the extensive potential for improvements in terms of scalability and space efficiency. As a consequence, DiVerG can process substantially larger datasets, such as whole human genomes, which are unmanageable by PairG. DiVerG offers faster index construction time and consistently faster query time with gains proportional to the size of the underlying compact data structure. We demonstrate that our method performs favorably on multiple real datasets at various scales. DiVerG achieves superior performance over PairG; e.g. resulting to 2.5-4x speed-up in query time, 44-340x smaller index size, and 3-50x faster construction time for the genome graph of the MHC region, as a particularly variable region of the human genome. The implementation is available at: https://github.com/cartoonist/diverg
Cite as

Ali Ghaffaari, Alexander Schönhuth, and Tobias Marschall. DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 10:1-10:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{ghaffaari_et_al:LIPIcs.WABI.2025.10,
  author =	{Ghaffaari, Ali and Sch\"{o}nhuth, Alexander and Marschall, Tobias},
  title =	{{DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{10:1--10:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.10},
  URN =		{urn:nbn:de:0030-drops-239369},
  doi =		{10.4230/LIPIcs.WABI.2025.10},
  annote =	{Keywords: Sequence graph, distance index, read mapping, sparse matrix}
}
Document
DOI: 10.4230/LIPIcs.WABI.2025.14
Human Readable Compression of GFA Paths Using Grammar-Based Code

Authors: Peter Heringer and Daniel Doerr

Published in: LIPIcs, Volume 344, 25th International Conference on Algorithms for Bioinformatics (WABI 2025)

Abstract
Pangenome graphs offer a compact and comprehensive representation of genomic diversity, improving tasks such as variant calling, genotyping, and other downstream analyses. Although the underlying graph structures scale sublinearly with the number of haplotypes, the widely used GFA file format suffers from rapidly growing file sizes due to the explicit and repetitive encoding of haplotype paths. In this work, we introduce an extension to the GFA format that enables efficient grammar-based compression of haplotype paths while retaining human readability. In addition, grammar-based encoding provides an efficient in-memory data structure that does not require decompression, but conversely improves the runtime of many computational tasks that involve haplotype comparisons. We present sqz, a method that makes use of the proposed format extension to encode haplotype paths using byte pair encoding, a grammar-based compression scheme. We evaluate sqz on recent human pangenome graphs from Heumos et al. and the Human Pangenome Reference Consortium (HPRC), comparing it to existing compressors bgzip, gbz, and sequitur. sqz scales sublinearly with the number of haplotypes in a pangenome graph and consistently achieves higher compression ratios than sequitur and up to 5 times better compression than bgzip in HPRC graphs and up to 10 times in the graph from Heumos et al.. When combined with bgzip, sqz matches or excels the compression ratio of gbz across all our datasets. These results demonstrate the potential of our proposed extension of the GFA format in reducing haplotype path redundancy and improving storage efficiency for pangenome graphs.
Cite as

Peter Heringer and Daniel Doerr. Human Readable Compression of GFA Paths Using Grammar-Based Code. In 25th International Conference on Algorithms for Bioinformatics (WABI 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 344, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{heringer_et_al:LIPIcs.WABI.2025.14,
  author =	{Heringer, Peter and Doerr, Daniel},
  title =	{{Human Readable Compression of GFA Paths Using Grammar-Based Code}},
  booktitle =	{25th International Conference on Algorithms for Bioinformatics (WABI 2025)},
  pages =	{14:1--14:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-386-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{344},
  editor =	{Brejov\'{a}, Bro\v{n}a and Patro, Rob},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2025.14},
  URN =		{urn:nbn:de:0030-drops-239395},
  doi =		{10.4230/LIPIcs.WABI.2025.14},
  annote =	{Keywords: pangenomics, pangenome graphs, compression, grammar-based code, byte pair encoding}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.108
Near-Optimal Hypergraph Sparsification in Insertion-Only and Bounded-Deletion Streams

Authors: Sanjeev Khanna, Aaron Putterman, and Madhu Sudan

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We study the problem of constructing hypergraph cut sparsifiers in the streaming model where a hypergraph on n vertices is revealed either via an arbitrary sequence of hyperedge insertions alone (insertion-only streaming model) or via an arbitrary sequence of hyperedge insertions and deletions (dynamic streaming model). For any ε ∈ (0,1), a (1 ± ε) hypergraph cut-sparsifier of a hypergraph H is a reweighted subgraph H' whose cut values approximate those of H to within a (1 ± ε) factor. Prior work shows that in the static setting, one can construct a (1 ± ε) hypergraph cut-sparsifier using Õ(nr/ε²) bits of space [Chen-Khanna-Nagda FOCS 2020], and in the setting of dynamic streams using Õ(nrlog m/ε²) bits of space [Khanna-Putterman-Sudan FOCS 2024]; here the Õ notation hides terms that are polylogarithmic in n, and we use m to denote the total number of hyperedges in the hypergraph. Up until now, the best known space complexity for insertion-only streams has been the same as that for the dynamic streams. This naturally poses the question of understanding the complexity of hypergraph sparsification in insertion-only streams. Perhaps surprisingly, in this work we show that in insertion-only streams, a (1 ± ε) cut-sparsifier can be computed in Õ(nr/ε²) bits of space, matching the complexity of the static setting. As a consequence, this also establishes an Ω(log m) factor separation between the space complexity of hypergraph cut sparsification in insertion-only streams and dynamic streams, as the latter is provably known to require Ω(nr log m) bits of space. To better explain this gap, we then show a more general result: namely, if the stream has at most k hyperedge deletions then Õ(n r log k/ε²) bits of space suffice for hypergraph cut sparsification. Thus the space complexity smoothly interpolates between the insertion-only regime (k = 0) and the fully dynamic regime (k = m). Our algorithmic results are driven by a key technical insight: once sufficiently many hyperedges have been inserted into the stream (relative to the number of allowed deletions), we can significantly reduce the underlying hypergraph by size by irrevocably contracting large subsets of vertices. Finally, we complement this result with an essentially matching lower bound of Ω(n r log(k/n)) bits, thus providing essentially a tight characterization of the space complexity for hypergraph cut-sparsification across a spectrum of streaming models.
Cite as

Sanjeev Khanna, Aaron Putterman, and Madhu Sudan. Near-Optimal Hypergraph Sparsification in Insertion-Only and Bounded-Deletion Streams. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 108:1-108:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{khanna_et_al:LIPIcs.ICALP.2025.108,
  author =	{Khanna, Sanjeev and Putterman, Aaron and Sudan, Madhu},
  title =	{{Near-Optimal Hypergraph Sparsification in Insertion-Only and Bounded-Deletion Streams}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{108:1--108:11},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.108},
  URN =		{urn:nbn:de:0030-drops-234851},
  doi =		{10.4230/LIPIcs.ICALP.2025.108},
  annote =	{Keywords: Sparsification, sketching, hypergraphs}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.69
Approximation Algorithms for Optimal Hopsets

Authors: Michael Dinitz, Ama Koranteng, and Yasamin Nazari

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
For a given graph G, a hopset H with hopbound β and stretch α is a set of edges such that between every pair of vertices u and v, there is a path with at most β hops in G ∪ H that approximates the distance between u and v up to a multiplicative stretch of α. Hopsets have found a wide range of applications for distance-based problems in various computational models since the 90s. More recently, there has been significant interest in understanding these fundamental objects from an existential and structural perspective. But all of this work takes a worst-case (or existential) point of view: How many edges do we need to add to satisfy a given hopbound and stretch requirement for any input graph? We initiate the study of the natural optimization variant of this problem: given a specific graph instance, what is the minimum number of edges that satisfy the hopbound and stretch requirements? We give approximation algorithms for a generalized hopset problem which, when combined with known existential bounds, lead to different approximation guarantees for various regimes depending on hopbound, stretch, and directed vs. undirected inputs. We complement our upper bounds with a lower bound that implies Label Cover hardness for directed hopsets and shortcut sets with hopbound at least 3.
Cite as

Michael Dinitz, Ama Koranteng, and Yasamin Nazari. Approximation Algorithms for Optimal Hopsets. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 69:1-69:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dinitz_et_al:LIPIcs.ICALP.2025.69,
  author =	{Dinitz, Michael and Koranteng, Ama and Nazari, Yasamin},
  title =	{{Approximation Algorithms for Optimal Hopsets}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{69:1--69:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.69},
  URN =		{urn:nbn:de:0030-drops-234464},
  doi =		{10.4230/LIPIcs.ICALP.2025.69},
  annote =	{Keywords: Hopsets, Approximation Algorithms}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.2
The Algebra of Patterns

Authors: David Binder and Lean Ermantraut

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Pattern matching is a popular feature in functional, imperative and object-oriented programming languages. Language designers should therefore invest effort in a good design for pattern matching. Most languages choose a first-match semantics for pattern matching; that is, clauses are tried in the order in which they appear in the program until the first one matches. As a consequence, the order in which the clauses appear cannot be arbitrarily changed, which results in a less declarative programming model. The declarative alternative to this is an order-independent semantics for pattern matching, which is not implemented in most programming languages since it requires more verbose patterns. The reason for this verbosity is that the syntax of patterns is usually not expressive enough to express the complement of a pattern. In this paper, we show a principled way to make order-independent pattern matching practical. Our solution consists of two parts: First, we introduce a boolean algebra of patterns which can express the complement of a pattern. Second, we introduce default clauses to pattern matches. These default clauses capture the essential idea of a fallthrough case without sacrificing the property of order-independence.
Cite as

David Binder and Lean Ermantraut. The Algebra of Patterns. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 2:1-2:28, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{binder_et_al:LIPIcs.ECOOP.2025.2,
  author =	{Binder, David and Ermantraut, Lean},
  title =	{{The Algebra of Patterns}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{2:1--2:28},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.2},
  URN =		{urn:nbn:de:0030-drops-232959},
  doi =		{10.4230/LIPIcs.ECOOP.2025.2},
  annote =	{Keywords: functional programming, pattern matching, algebraic data types, equational reasoning}
}
Document
DOI: 10.4230/LIPIcs.ECOOP.2025.17
Contrasting Deadlock-Free Session Processes

Authors: Juan C. Jaramillo and Jorge A. Pérez

Published in: LIPIcs, Volume 333, 39th European Conference on Object-Oriented Programming (ECOOP 2025)

Abstract
Deadlock freedom is a crucial property for message-passing programs. Over the years, several different type systems for concurrent processes that ensure deadlock freedom have been proposed; this diversity raises the question of how they compare. We address this question, considering two type systems not covered in prior work: Kokke et al.’s HCP, a type system based on a linear logic with hypersequents, and Padovani’s priority-based type system for asynchronous processes, dubbed 𝖯. Their distinctive features make formal comparisons relevant and challenging. Our findings are two-fold: (1) the hypersequent setting does not drastically change the class of deadlock-free processes induced by linear logic, and (2) we relate the classes of deadlock-free processes induced by HCP and 𝖯. We prove that our results hold under both synchronous and asynchronous communication. Our results provide new insights into the essential mechanisms involved in statically avoiding deadlocks in concurrency.
Cite as

Juan C. Jaramillo and Jorge A. Pérez. Contrasting Deadlock-Free Session Processes. In 39th European Conference on Object-Oriented Programming (ECOOP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 333, pp. 17:1-17:29, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{jaramillo_et_al:LIPIcs.ECOOP.2025.17,
  author =	{Jaramillo, Juan C. and P\'{e}rez, Jorge A.},
  title =	{{Contrasting Deadlock-Free Session Processes}},
  booktitle =	{39th European Conference on Object-Oriented Programming (ECOOP 2025)},
  pages =	{17:1--17:29},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-373-7},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{333},
  editor =	{Aldrich, Jonathan and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ECOOP.2025.17},
  URN =		{urn:nbn:de:0030-drops-233103},
  doi =		{10.4230/LIPIcs.ECOOP.2025.17},
  annote =	{Keywords: session types, process calculi, deadlock freedom}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2025.36
Strongly Sublinear Separators and Bounded Asymptotic Dimension for Sphere Intersection Graphs

Authors: James Davies, Agelos Georgakopoulos, Meike Hatzel, and Rose McCarty

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract
In this paper, we consider the class 𝒞^d of sphere intersection graphs in R^d for d ≥ 2. We show that for each integer t, the class of all graphs in 𝒞^d that exclude K_{t,t} as a subgraph has strongly sublinear separators. We also prove that 𝒞^d has asymptotic dimension at most 2d+2.
Cite as

James Davies, Agelos Georgakopoulos, Meike Hatzel, and Rose McCarty. Strongly Sublinear Separators and Bounded Asymptotic Dimension for Sphere Intersection Graphs. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 36:1-36:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{davies_et_al:LIPIcs.SoCG.2025.36,
  author =	{Davies, James and Georgakopoulos, Agelos and Hatzel, Meike and McCarty, Rose},
  title =	{{Strongly Sublinear Separators and Bounded Asymptotic Dimension for Sphere Intersection Graphs}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{36:1--36:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.36},
  URN =		{urn:nbn:de:0030-drops-231881},
  doi =		{10.4230/LIPIcs.SoCG.2025.36},
  annote =	{Keywords: Intersection graphs, strongly sublinear separators, asymptotic dimension}
}
Document
DOI: 10.4230/LIPIcs.CPM.2025.1
Representing Paths in Digraphs

Authors: Riccardo Dondi and Alexandru Popa

Published in: LIPIcs, Volume 331, 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)

Abstract
In this contribution we consider two combinatorial problems related to graph string matching, motivated by recent approaches in computational genomics. Given a DAG where each node is labeled by a symbol, the problems aim to find a path in the DAG whose nodes contain all (or the maximum number of) symbols of the alphabet. We introduce a decision problem, Σ-Representing Path, that asks whether there exists a path that contains all the symbols of the alphabet, and an optimization problem, called Maximum Representing Path, that asks for a path that contains the maximum number of symbols. We analyze the complexity of the problems, showing the NP-completeness of {Σ-Representing Path} when each symbol labels at most three nodes in the DAG, and showing the APX-hardness of Maximum Representing Path when each symbol labels at most two nodes in the DAG. We complement the first result by giving a polynomial-time algorithm for Σ-Representing Path when each symbol labels at most two nodes in the DAG. Then we investigate the parameterized complexity of the two problems when the DAG has a limited distance from a set of disjoint paths and we show that both problems are W[1]-hard for this parameter. We consider the approximation of Maximum Representing Path, giving an approximation algorithm of factor √OPT, where OPT is the value of an optimal solution of the problem. We also show that Maximum Representing Path cannot be approximated within factor e/(e-1) - α, for any constant α > 0, unless NP ⊆ DTIME(|V|^{O(log log |V|)}) (V is the set of nodes of the DAG).
Cite as

Riccardo Dondi and Alexandru Popa. Representing Paths in Digraphs. In 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 331, pp. 1:1-1:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{dondi_et_al:LIPIcs.CPM.2025.1,
  author =	{Dondi, Riccardo and Popa, Alexandru},
  title =	{{Representing Paths in Digraphs}},
  booktitle =	{36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)},
  pages =	{1:1--1:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-369-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{331},
  editor =	{Bonizzoni, Paola and M\"{a}kinen, Veli},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2025.1},
  URN =		{urn:nbn:de:0030-drops-230954},
  doi =		{10.4230/LIPIcs.CPM.2025.1},
  annote =	{Keywords: Graph String Matching, Computational Complexity, Parameterized Complexity, Algorithms}
}
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