41 Search Results for "Spirakis, Paul G."


Document
Track B: Automata, Logic, Semantics, and Theory of Programming
A Finite Presentation of Graphs of Treewidth at Most Three

Authors: Amina Doumane, Samuel Humeau, and Damien Pous

Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)


Abstract
We provide a finite equational presentation of graphs of treewidth at most three, solving an instance of an open problem by Courcelle and Engelfriet. We use a syntax generalising series-parallel expressions, denoting graphs with a small interface. We introduce appropriate notions of connectivity for such graphs (components, cutvertices, separation pairs). We use those concepts to analyse the structure of graphs of treewidth at most three, showing how they can be decomposed recursively, first canonically into connected parallel components, and then non-deterministically. The main difficulty consists in showing that all non-deterministic choices can be related using only finitely many equational axioms.

Cite as

Amina Doumane, Samuel Humeau, and Damien Pous. A Finite Presentation of Graphs of Treewidth at Most Three. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 135:1-135:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@InProceedings{doumane_et_al:LIPIcs.ICALP.2024.135,
  author =	{Doumane, Amina and Humeau, Samuel and Pous, Damien},
  title =	{{A Finite Presentation of Graphs of Treewidth at Most Three}},
  booktitle =	{51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)},
  pages =	{135:1--135:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-322-5},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{297},
  editor =	{Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.135},
  URN =		{urn:nbn:de:0030-drops-202787},
  doi =		{10.4230/LIPIcs.ICALP.2024.135},
  annote =	{Keywords: Graphs, treewidth, connectedness, axiomatisation, series-parallel expressions}
}
Document
Temporal Graph Realization from Fastest Paths

Authors: Nina Klobas, George B. Mertzios, Hendrik Molter, and Paul G. Spirakis

Published in: LIPIcs, Volume 292, 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)


Abstract
In this paper we initiate the study of the temporal graph realization problem with respect to the fastest path durations among its vertices, while we focus on periodic temporal graphs. Given an n × n matrix D and a Δ ∈ ℕ, the goal is to construct a Δ-periodic temporal graph with n vertices such that the duration of a fastest path from v_i to v_j is equal to D_{i,j}, or to decide that such a temporal graph does not exist. The variations of the problem on static graphs has been well studied and understood since the 1960’s (e.g. [Erdős and Gallai, 1960], [Hakimi and Yau, 1965]). As it turns out, the periodic temporal graph realization problem has a very different computational complexity behavior than its static (i. e., non-temporal) counterpart. First we show that the problem is NP-hard in general, but polynomial-time solvable if the so-called underlying graph is a tree. Building upon those results, we investigate its parameterized computational complexity with respect to structural parameters of the underlying static graph which measure the "tree-likeness". We prove a tight classification between such parameters that allow fixed-parameter tractability (FPT) and those which imply W[1]-hardness. We show that our problem is W[1]-hard when parameterized by the feedback vertex number (and therefore also any smaller parameter such as treewidth, degeneracy, and cliquewidth) of the underlying graph, while we show that it is in FPT when parameterized by the feedback edge number (and therefore also any larger parameter such as maximum leaf number) of the underlying graph.

Cite as

Nina Klobas, George B. Mertzios, Hendrik Molter, and Paul G. Spirakis. Temporal Graph Realization from Fastest Paths. In 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 292, pp. 16:1-16:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@InProceedings{klobas_et_al:LIPIcs.SAND.2024.16,
  author =	{Klobas, Nina and Mertzios, George B. and Molter, Hendrik and Spirakis, Paul G.},
  title =	{{Temporal Graph Realization from Fastest Paths}},
  booktitle =	{3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)},
  pages =	{16:1--16:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-315-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{292},
  editor =	{Casteigts, Arnaud and Kuhn, Fabian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2024.16},
  URN =		{urn:nbn:de:0030-drops-198945},
  doi =		{10.4230/LIPIcs.SAND.2024.16},
  annote =	{Keywords: Temporal graph, periodic temporal labeling, fastest temporal path, graph realization, temporal connectivity, parameterized complexity}
}
Document
Brief Announcement
Brief Announcement: Collision-Free Robot Scheduling

Authors: Duncan Adamson, Nathan Flaherty, Igor Potapov, and Paul G. Spirakis

Published in: LIPIcs, Volume 292, 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)


Abstract
Robots are becoming an increasingly common part of scientific work within laboratory environments. In this paper, we investigate the problem of designing schedules for completing a set of tasks at fixed locations with multiple robots in a laboratory. We represent the laboratory as a graph with tasks placed on fixed vertices and robots represented as agents, with the constraint that no two robots may occupy the same vertex, or traverse the same edge, at the same time. Each schedule is partitioned into a set of timesteps, corresponding to a walk through the graph (allowing for a robot to wait at a vertex to complete a task), with each timestep taking time equal to the time for a robot to move from one vertex to another and each task taking some given number of timesteps during the completion of which a robot must stay at the vertex containing the task. The goal is to determine a set of schedules, with one schedule for each robot, minimising the number of timesteps taken by the schedule taking the greatest number of timesteps within the set of schedules. We show that the problem of finding a task-fulfilling schedule in at most L timesteps is NP-complete for many simple classes of graphs. Explicitly, we provide this result for complete graphs, bipartite graphs, star graphs, and planar graphs. Finally, we provide positive results for line graphs, showing that we can find an optimal set of schedules for k robots completing m tasks of equal length of a path of length n in O(kmn) time, and a k-approximation when the length of the tasks is unbounded.

Cite as

Duncan Adamson, Nathan Flaherty, Igor Potapov, and Paul G. Spirakis. Brief Announcement: Collision-Free Robot Scheduling. In 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 292, pp. 22:1-22:5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@InProceedings{adamson_et_al:LIPIcs.SAND.2024.22,
  author =	{Adamson, Duncan and Flaherty, Nathan and Potapov, Igor and Spirakis, Paul G.},
  title =	{{Brief Announcement: Collision-Free Robot Scheduling}},
  booktitle =	{3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)},
  pages =	{22:1--22:5},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-315-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{292},
  editor =	{Casteigts, Arnaud and Kuhn, Fabian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2024.22},
  URN =		{urn:nbn:de:0030-drops-199004},
  doi =		{10.4230/LIPIcs.SAND.2024.22},
  annote =	{Keywords: Graph Exploration, Scheduling, NP-Completeness, Approximation Algorithms}
}
Document
Brief Announcement
Brief Announcement: On the Existence of δ-Temporal Cliques in Random Simple Temporal Graphs

Authors: George B. Mertzios, Sotiris Nikoletseas, Christoforos Raptopoulos, and Paul G. Spirakis

Published in: LIPIcs, Volume 292, 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)


Abstract
We consider random simple temporal graphs in which every edge of the complete graph K_n appears once within the time interval [0,1] independently and uniformly at random. Our main result is a sharp threshold on the size of any maximum δ-clique (namely a clique with edges appearing at most δ apart within [0,1]) in random instances of this model, for any constant δ. In particular, using the probabilistic method, we prove that the size of a maximum δ-clique is approximately (2 log n)/(log 1/δ) with high probability (whp). What seems surprising is that, even though the random simple temporal graph contains Θ(n²) overlapping δ-windows, which (when viewed separately) correspond to different random instances of the Erdős-Rényi random graphs model, the size of the maximum δ-clique in the former model and the maximum clique size of the latter are approximately the same. Furthermore, we show that the minimum interval containing a δ-clique is δ-o(δ) whp. We use this result to show that any polynomial time algorithm for δ-Temporal Clique is unlikely to have very large probability of success.

Cite as

George B. Mertzios, Sotiris Nikoletseas, Christoforos Raptopoulos, and Paul G. Spirakis. Brief Announcement: On the Existence of δ-Temporal Cliques in Random Simple Temporal Graphs. In 3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 292, pp. 27:1-27:5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)


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@InProceedings{mertzios_et_al:LIPIcs.SAND.2024.27,
  author =	{Mertzios, George B. and Nikoletseas, Sotiris and Raptopoulos, Christoforos and Spirakis, Paul G.},
  title =	{{Brief Announcement: On the Existence of \delta-Temporal Cliques in Random Simple Temporal Graphs}},
  booktitle =	{3rd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2024)},
  pages =	{27:1--27:5},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-315-7},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{292},
  editor =	{Casteigts, Arnaud and Kuhn, Fabian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2024.27},
  URN =		{urn:nbn:de:0030-drops-199056},
  doi =		{10.4230/LIPIcs.SAND.2024.27},
  annote =	{Keywords: Simple random temporal graph, \delta-temporal clique, probabilistic method}
}
Document
Invited Talk
Sliding into the Future: Investigating Sliding Windows in Temporal Graphs (Invited Talk)

Authors: Nina Klobas, George B. Mertzios, and Paul G. Spirakis

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)


Abstract
Graphs are fundamental tools for modelling relations among objects in various scientific fields. However, traditional static graphs have limitations when it comes to capturing the dynamic nature of real-world systems. To overcome this limitation, temporal graphs have been introduced as a framework to model graphs that change over time. In temporal graphs the edges among vertices appear and disappear at specific time steps, reflecting the temporal dynamics of the observed system, which allows us to analyse time dependent patterns and processes. In this paper we focus on the research related to sliding time windows in temporal graphs. Sliding time windows offer a way to analyse specific time intervals within the lifespan of a temporal graph. By sliding the window along the timeline, we can examine the graph’s characteristics and properties within different time periods. This paper provides an overview of the research on sliding time windows in temporal graphs. Although progress has been made in this field, there are still many interesting questions and challenges to be explored. We discuss some of the open problems and highlight their potential for future research.

Cite as

Nina Klobas, George B. Mertzios, and Paul G. Spirakis. Sliding into the Future: Investigating Sliding Windows in Temporal Graphs (Invited Talk). In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 5:1-5:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{klobas_et_al:LIPIcs.MFCS.2023.5,
  author =	{Klobas, Nina and Mertzios, George B. and Spirakis, Paul G.},
  title =	{{Sliding into the Future: Investigating Sliding Windows in Temporal Graphs}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{5:1--5:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.5},
  URN =		{urn:nbn:de:0030-drops-185397},
  doi =		{10.4230/LIPIcs.MFCS.2023.5},
  annote =	{Keywords: Temporal Graphs, Sliding Time Windows}
}
Document
Snapshot Disjointness in Temporal Graphs

Authors: Allen Ibiapina and Ana Silva

Published in: LIPIcs, Volume 257, 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)


Abstract
In the study of temporal graphs, only paths respecting the flow of time are relevant. In this context, many concepts of walks disjointness have been proposed over the years, and the validity of Menger’s Theorem, as well as the complexity of related problems, has been investigated. Menger’s Theorem states that the maximum number of disjoint paths between two vertices is equal to the minimum number of vertices required to disconnect them. In this paper, we introduce and investigate a type of disjointness that is only time dependent. Two walks are said to be snapshot disjoint if they are not active in a same snapshot (also called timestep). The related paths and cut problems are then defined and proved to be W[1]-hard and XP-time solvable when parameterized by the size of the solution. Additionally, in the light of the definition of Mengerian graphs given by Kempe, Kleinberg and Kumar in their seminal paper (STOC'2000), we define a Mengerian graph for time as a graph G for which there is no time labeling for its edges where Menger’s Theorem does not hold in the context of snapshot disjointness. We then give a characterization of Mengerian graphs in terms of forbidden structures and provide a polynomial-time recognition algorithm. Finally, we also prove that, given a temporal graph (G,λ) and a pair of vertices s,z ∈ V(G), deciding whether at most h multiedges can separate s from z is NP-complete, where one multiedge uv is the set of all edges with endpoints u and v.

Cite as

Allen Ibiapina and Ana Silva. Snapshot Disjointness in Temporal Graphs. In 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 257, pp. 1:1-1:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{ibiapina_et_al:LIPIcs.SAND.2023.1,
  author =	{Ibiapina, Allen and Silva, Ana},
  title =	{{Snapshot Disjointness in Temporal Graphs}},
  booktitle =	{2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)},
  pages =	{1:1--1:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-275-4},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{257},
  editor =	{Doty, David and Spirakis, Paul},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2023.1},
  URN =		{urn:nbn:de:0030-drops-179379},
  doi =		{10.4230/LIPIcs.SAND.2023.1},
  annote =	{Keywords: Temporal graphs, Menger’s Theorem, Snapshot disjointness}
}
Document
Partial Gathering of Mobile Agents in Dynamic Tori

Authors: Masahiro Shibata, Naoki Kitamura, Ryota Eguchi, Yuichi Sudo, Junya Nakamura, and Yonghwan Kim

Published in: LIPIcs, Volume 257, 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)


Abstract
In this paper, we consider the partial gathering problem of mobile agents in synchronous dynamic tori. The partial gathering problem is a generalization of the (well-investigated) total gathering problem, which requires that all k agents distributed in the network terminate at a non-predetermined single node. The partial gathering problem requires, for a given positive integer g (< k), that agents terminate in a configuration such that either at least g agents or no agent exists at each node. So far, in almost cases, the partial gathering problem has been considered in static graphs. As only one exception, it is considered in a kind of dynamic rings called 1-interval connected rings, that is, one of the links in the ring may be missing at each time step. In this paper, we consider partial gathering in another dynamic topology. Concretely, we consider it in n× n dynamic tori such that each of row rings and column rings is represented as a 1-interval connected ring. In such networks, when k = O(gn), focusing on the relationship between the values of k, n, and g, we aim to characterize the solvability of the partial gathering problem and analyze the move complexity of the proposed algorithms when the problem can be solved. First, we show that agents cannot solve the problem when k = o(gn), which means that Ω (gn) agents are necessary to solve the problem. Second, we show that the problem can be solved with the total number of O(gn³) moves when 2gn+2n-1 ≤ k ≤ 2gn + 6n +16g -12. Finally, we show that the problem can be solved with the total number of O(gn²) moves when k ≥ 2gn + 6n +16g -11. From these results, we show that our algorithms can solve the partial gathering problem in dynamic tori with the asymptotically optimal number Θ (gn) of agents. In addition, we show that agents require a total number of Ω(gn²) moves to solve the partial gathering problem in dynamic tori when k = Θ(gn). Thus, when k ≥ 2gn+6n+16g -11, our algorithm can solve the problem with asymptotically optimal number O(gn²) of agent moves.

Cite as

Masahiro Shibata, Naoki Kitamura, Ryota Eguchi, Yuichi Sudo, Junya Nakamura, and Yonghwan Kim. Partial Gathering of Mobile Agents in Dynamic Tori. In 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 257, pp. 2:1-2:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{shibata_et_al:LIPIcs.SAND.2023.2,
  author =	{Shibata, Masahiro and Kitamura, Naoki and Eguchi, Ryota and Sudo, Yuichi and Nakamura, Junya and Kim, Yonghwan},
  title =	{{Partial Gathering of Mobile Agents in Dynamic Tori}},
  booktitle =	{2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)},
  pages =	{2:1--2:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-275-4},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{257},
  editor =	{Doty, David and Spirakis, Paul},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2023.2},
  URN =		{urn:nbn:de:0030-drops-179387},
  doi =		{10.4230/LIPIcs.SAND.2023.2},
  annote =	{Keywords: distributed system, mobile agents, partial gathering, dynamic tori}
}
Document
New Clocks, Optimal Line Formation and Self-Replication Population Protocols

Authors: Leszek Gąsieniec, Paul G. Spirakis, and Grzegorz Stachowiak

Published in: LIPIcs, Volume 254, 40th International Symposium on Theoretical Aspects of Computer Science (STACS 2023)


Abstract
In this paper we consider a known variant of the standard population protocol model in which agents are allowed to be connected by edges, referred to as the network constructor model. During an interaction between two agents the relevant connecting edge can be formed, maintained or eliminated by the transition function. Since pairs of agents are chosen uniformly at random the status of each edge is updated every Θ(n²) interactions in expectation which coincides with Θ(n) parallel time. This phenomenon provides a natural lower bound on the time complexity for any non-trivial network construction designed for this variant. This is in contrast with the standard population protocol model in which efficient protocols operate in O(polylog n) parallel time. The main focus of this paper is on efficient manipulation of linear structures including formation, self-replication and distribution (including pipelining) of complex information in the adopted model. - We propose and analyze a novel edge based phase clock counting parallel time Θ(nlog n) in the network constructor model, showing also that its leader based counterpart provides the same time guarantees in the standard population protocol model. Note that all currently known phase clocks can count parallel time not exceeding O(polylog n). - We prove that any spanning line formation protocol requires Ω(nlog n) parallel time if high probability guaranty is imposed. We also show that the new clock enables an optimal O(nlog n) parallel time spanning line construction, which improves dramatically on the best currently known O(n²) parallel time protocol, solving the main open problem in the considered model [O. Michail and P. Spirakis, 2016]. - We propose a new probabilistic bubble-sort algorithm in which random comparisons and transfers are limited to the adjacent positions in the sequence. Utilising a novel potential function reasoning we show that rather surprisingly this probabilistic sorting procedure requires O(n²) comparisons in expectation and whp, and is on par with its deterministic counterpart. - We propose the first population protocol allowing self-replication of a strand of an arbitrary length k (carrying k-bit message of size independent of the state space) in parallel time O(n(k+log n)). The bit pipelining mechanism and the time complexity analysis of self-replication process mimic those used in the probabilistic bubble-sort argument. The new protocol permits also simultaneous self-replication, where l copies of the strand can be created in parallel in time O(n(k+log n)log l). We also discuss application of the strand self-replication protocol to pattern matching. All protocols are always correct and provide time guarantees with high probability defined as 1-n^(-η), for a constant η > 0.

Cite as

Leszek Gąsieniec, Paul G. Spirakis, and Grzegorz Stachowiak. New Clocks, Optimal Line Formation and Self-Replication Population Protocols. In 40th International Symposium on Theoretical Aspects of Computer Science (STACS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 254, pp. 33:1-33:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{gasieniec_et_al:LIPIcs.STACS.2023.33,
  author =	{G\k{a}sieniec, Leszek and Spirakis, Paul G. and Stachowiak, Grzegorz},
  title =	{{New Clocks, Optimal Line Formation and Self-Replication Population Protocols}},
  booktitle =	{40th International Symposium on Theoretical Aspects of Computer Science (STACS 2023)},
  pages =	{33:1--33:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-266-2},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{254},
  editor =	{Berenbrink, Petra and Bouyer, Patricia and Dawar, Anuj and Kant\'{e}, Mamadou Moustapha},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2023.33},
  URN =		{urn:nbn:de:0030-drops-176857},
  doi =		{10.4230/LIPIcs.STACS.2023.33},
  annote =	{Keywords: Population protocols, constructors, probabilistic bubble-sort, self-replication}
}
Document
Brief Announcement
Brief Announcement: New Clocks, Fast Line Formation and Self-Replication Population Protocols

Authors: Leszek Gąsieniec, Paul Spirakis, and Grzegorz Stachowiak

Published in: LIPIcs, Volume 246, 36th International Symposium on Distributed Computing (DISC 2022)


Abstract
In this paper we consider a known variant of the standard population protocol model in which agents can be connected by edges, referred to as the network constructor model. During an interaction between two agents the relevant connecting edge can be formed, maintained or eliminated by the transition function. The state space of agents is fixed (constant size) and the size n of the population is not known, i.e., not hard-coded in the transition function. Since pairs of agents are chosen uniformly at random the status of each edge is updated every Θ(n²) interactions in expectation which coincides with Θ(n) parallel time. This phenomenon provides a natural lower bound on the time complexity for any non-trivial network construction designed for this variant. This is in contrast with the standard population protocol model in which efficient protocols operate in O(polylog n) parallel time. The main focus in this paper is on efficient manipulation of linear structures including formation, self-replication and distribution (including pipelining) of complex information in the adopted model. - We propose and analyse a novel edge based phase clock counting parallel time Θ(nlog n) in the network constructor model, showing also that its leader based counterpart provides the same time guaranties in the standard population protocol model. Note that all currently known phase clocks can count parallel time not exceeding O(polylog n). - The new clock enables a nearly optimal O(nlog n) parallel time spanning line construction (a key component of universal network construction), which improves dramatically on the best currently known O(n²) parallel time protocol, solving the main open problem in the considered model [O. Michail and P. Spirakis, 2016]. - We propose a new probabilistic bubble-sort algorithm in which random comparisons and transfers are allowed only between the adjacent positions in the sequence. Utilising a novel potential function reasoning we show that rather surprisingly this probabilistic sorting (via conditional pipelining) procedure requires O(n²) comparisons in expectation and whp, and is on par with its deterministic counterpart. - We propose the first population protocol allowing self-replication of a strand of an arbitrary length k (carrying a k-bit message of size independent of the state space) in parallel time O(n(k+log n)). The pipelining mechanism and the time complexity analysis of the strand self-replication protocol mimic those used in the probabilistic bubble-sort. The new protocol permits also simultaneous self-replication, where l copies of the strand can be created in time O(n(k+log n)log l). Finally, we discuss application of the strand self-replication protocol to pattern matching. Our protocols are always correct and provide time guaranties with high probability defined as 1-n^{-η}, for a constant η > 0.

Cite as

Leszek Gąsieniec, Paul Spirakis, and Grzegorz Stachowiak. Brief Announcement: New Clocks, Fast Line Formation and Self-Replication Population Protocols. In 36th International Symposium on Distributed Computing (DISC 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 246, pp. 44:1-44:3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)


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@InProceedings{gasieniec_et_al:LIPIcs.DISC.2022.44,
  author =	{G\k{a}sieniec, Leszek and Spirakis, Paul and Stachowiak, Grzegorz},
  title =	{{Brief Announcement: New Clocks, Fast Line Formation and Self-Replication Population Protocols}},
  booktitle =	{36th International Symposium on Distributed Computing (DISC 2022)},
  pages =	{44:1--44:3},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-255-6},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{246},
  editor =	{Scheideler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DISC.2022.44},
  URN =		{urn:nbn:de:0030-drops-172351},
  doi =		{10.4230/LIPIcs.DISC.2022.44},
  annote =	{Keywords: Population protocols, network constructors, probabilistic bubble-sort, self-replication}
}
Document
The Complexity of Computing Optimum Labelings for Temporal Connectivity

Authors: Nina Klobas, George B. Mertzios, Hendrik Molter, and Paul G. Spirakis

Published in: LIPIcs, Volume 241, 47th International Symposium on Mathematical Foundations of Computer Science (MFCS 2022)


Abstract
A graph is temporally connected if there exists a strict temporal path, i.e., a path whose edges have strictly increasing labels, from every vertex u to every other vertex v. In this paper we study temporal design problems for undirected temporally connected graphs. The basic setting of these optimization problems is as follows: given a connected undirected graph G, what is the smallest number |λ| of time-labels that we need to add to the edges of G such that the resulting temporal graph (G,λ) is temporally connected? As it turns out, this basic problem, called Minimum Labeling (ML), can be optimally solved in polynomial time. However, exploiting the temporal dimension, the problem becomes more interesting and meaningful in its following variations, which we investigate in this paper. First we consider the problem Min. Aged Labeling (MAL) of temporally connecting the graph when we are given an upper-bound on the allowed age (i.e., maximum label) of the obtained temporal graph (G,λ). Second we consider the problem Min. Steiner Labeling (MSL), where the aim is now to have a temporal path between any pair of "important" vertices which lie in a subset R ⊆ V, which we call the terminals. This relaxed problem resembles the problem Steiner Tree in static (i.e., non-temporal) graphs. However, due to the requirement of strictly increasing labels in a temporal path, Steiner Tree is not a special case of MSL. Finally we consider the age-restricted version of MSL, namely Min. Aged Steiner Labeling (MASL). Our main results are threefold: we prove that (i) MAL becomes NP-complete on undirected graphs, while (ii) MASL becomes W[1]-hard with respect to the number |R| of terminals. On the other hand we prove that (iii) although the age-unrestricted problem MSL remains NP-hard, it is in FPT with respect to the number |R| of terminals. That is, adding the age restriction, makes the above problems strictly harder (unless P=NP or W[1]=FPT).

Cite as

Nina Klobas, George B. Mertzios, Hendrik Molter, and Paul G. Spirakis. The Complexity of Computing Optimum Labelings for Temporal Connectivity. In 47th International Symposium on Mathematical Foundations of Computer Science (MFCS 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 241, pp. 62:1-62:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)


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@InProceedings{klobas_et_al:LIPIcs.MFCS.2022.62,
  author =	{Klobas, Nina and Mertzios, George B. and Molter, Hendrik and Spirakis, Paul G.},
  title =	{{The Complexity of Computing Optimum Labelings for Temporal Connectivity}},
  booktitle =	{47th International Symposium on Mathematical Foundations of Computer Science (MFCS 2022)},
  pages =	{62:1--62:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-256-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{241},
  editor =	{Szeider, Stefan and Ganian, Robert and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2022.62},
  URN =		{urn:nbn:de:0030-drops-168603},
  doi =		{10.4230/LIPIcs.MFCS.2022.62},
  annote =	{Keywords: Temporal graph, graph labeling, foremost temporal path, temporal connectivity, Steiner Tree}
}
Document
Invited Talk
Algorithmic Problems on Temporal Graphs (Invited Talk)

Authors: Paul G. Spirakis

Published in: LIPIcs, Volume 221, 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)


Abstract
Research on Temporal Graphs has expanded in the last few years. Most of the results till now, address problems related to the notion of Temporal Paths (and Temporal Connectivity). In this talk, we focus, instead, on problems whose main topic is not on Temporal Paths. In particular, we will discuss Temporal Vertex Covers, the notion of Temporal Transitivity, and also issues and models of stochastic temporal graphs. We believe that several algorithmic graph problems, not directly related to paths, can be raised in the temporal domain. This may motivate new research towards lifting more topics of algorithmic graph theory to the temporal case.

Cite as

Paul G. Spirakis. Algorithmic Problems on Temporal Graphs (Invited Talk). In 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 221, p. 2:1, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)


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@InProceedings{spirakis:LIPIcs.SAND.2022.2,
  author =	{Spirakis, Paul G.},
  title =	{{Algorithmic Problems on Temporal Graphs}},
  booktitle =	{1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)},
  pages =	{2:1--2:1},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-224-2},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{221},
  editor =	{Aspnes, James and Michail, Othon},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2022.2},
  URN =		{urn:nbn:de:0030-drops-159446},
  doi =		{10.4230/LIPIcs.SAND.2022.2},
  annote =	{Keywords: Temporal graph, stochastic temporal graph, vertex cover, temporal transitivity}
}
Document
MAX CUT in Weighted Random Intersection Graphs and Discrepancy of Sparse Random Set Systems

Authors: Sotiris Nikoletseas, Christoforos Raptopoulos, and Paul Spirakis

Published in: LIPIcs, Volume 212, 32nd International Symposium on Algorithms and Computation (ISAAC 2021)


Abstract
Let V be a set of n vertices, M a set of m labels, and let 𝐑 be an m × n matrix of independent Bernoulli random variables with probability of success p; columns of 𝐑 are incidence vectors of label sets assigned to vertices. A random instance G(V, E, 𝐑^T 𝐑) of the weighted random intersection graph model is constructed by drawing an edge with weight equal to the number of common labels (namely [𝐑^T 𝐑]_{v,u}) between any two vertices u, v for which this weight is strictly larger than 0. In this paper we study the average case analysis of Weighted Max Cut, assuming the input is a weighted random intersection graph, i.e. given G(V, E, 𝐑^T 𝐑) we wish to find a partition of V into two sets so that the total weight of the edges having exactly one endpoint in each set is maximized. In particular, we initially prove that the weight of a maximum cut of G(V, E, 𝐑^T 𝐑) is concentrated around its expected value, and then show that, when the number of labels is much smaller than the number of vertices (in particular, m = n^α, α < 1), a random partition of the vertices achieves asymptotically optimal cut weight with high probability. Furthermore, in the case n = m and constant average degree (i.e. p = Θ(1)/n), we show that with high probability, a majority type randomized algorithm outputs a cut with weight that is larger than the weight of a random cut by a multiplicative constant strictly larger than 1. Then, we formally prove a connection between the computational problem of finding a (weighted) maximum cut in G(V, E, 𝐑^T 𝐑) and the problem of finding a 2-coloring that achieves minimum discrepancy for a set system Σ with incidence matrix 𝐑 (i.e. minimum imbalance over all sets in Σ). We exploit this connection by proposing a (weak) bipartization algorithm for the case m = n, p = Θ(1)/n that, when it terminates, its output can be used to find a 2-coloring with minimum discrepancy in a set system with incidence matrix 𝐑. In fact, with high probability, the latter 2-coloring corresponds to a bipartition with maximum cut-weight in G(V, E, 𝐑^T 𝐑). Finally, we prove that our (weak) bipartization algorithm terminates in polynomial time, with high probability, at least when p = c/n, c < 1.

Cite as

Sotiris Nikoletseas, Christoforos Raptopoulos, and Paul Spirakis. MAX CUT in Weighted Random Intersection Graphs and Discrepancy of Sparse Random Set Systems. In 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 212, pp. 28:1-28:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)


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@InProceedings{nikoletseas_et_al:LIPIcs.ISAAC.2021.28,
  author =	{Nikoletseas, Sotiris and Raptopoulos, Christoforos and Spirakis, Paul},
  title =	{{MAX CUT in Weighted Random Intersection Graphs and Discrepancy of Sparse Random Set Systems}},
  booktitle =	{32nd International Symposium on Algorithms and Computation (ISAAC 2021)},
  pages =	{28:1--28:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-214-3},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{212},
  editor =	{Ahn, Hee-Kap and Sadakane, Kunihiko},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2021.28},
  URN =		{urn:nbn:de:0030-drops-154612},
  doi =		{10.4230/LIPIcs.ISAAC.2021.28},
  annote =	{Keywords: Random Intersection Graphs, Maximum Cut, Discrepancy}
}
Document
The Complexity of Transitively Orienting Temporal Graphs

Authors: George B. Mertzios, Hendrik Molter, Malte Renken, Paul G. Spirakis, and Philipp Zschoche

Published in: LIPIcs, Volume 202, 46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021)


Abstract
In a temporal network with discrete time-labels on its edges, entities and information can only "flow" along sequences of edges whose time-labels are non-decreasing (resp. increasing), i.e. along temporal (resp. strict temporal) paths. Nevertheless, in the model for temporal networks of [Kempe, Kleinberg, Kumar, JCSS, 2002], the individual time-labeled edges remain undirected: an edge e = {u,v} with time-label t specifies that "u communicates with v at time t". This is a symmetric relation between u and v, and it can be interpreted that the information can flow in either direction. In this paper we make a first attempt to understand how the direction of information flow on one edge can impact the direction of information flow on other edges. More specifically, naturally extending the classical notion of a transitive orientation in static graphs, we introduce the fundamental notion of a temporal transitive orientation and we systematically investigate its algorithmic behavior in various situations. An orientation of a temporal graph is called temporally transitive if, whenever u has a directed edge towards v with time-label t₁ and v has a directed edge towards w with time-label t₂ ≥ t₁, then u also has a directed edge towards w with some time-label t₃ ≥ t₂. If we just demand that this implication holds whenever t₂ > t₁, the orientation is called strictly temporally transitive, as it is based on the fact that there is a strict directed temporal path from u to w. Our main result is a conceptually simple, yet technically quite involved, polynomial-time algorithm for recognizing whether a given temporal graph 𝒢 is transitively orientable. In wide contrast we prove that, surprisingly, it is NP-hard to recognize whether 𝒢 is strictly transitively orientable. Additionally we introduce and investigate further related problems to temporal transitivity, notably among them the temporal transitive completion problem, for which we prove both algorithmic and hardness results.

Cite as

George B. Mertzios, Hendrik Molter, Malte Renken, Paul G. Spirakis, and Philipp Zschoche. The Complexity of Transitively Orienting Temporal Graphs. In 46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 202, pp. 75:1-75:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)


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@InProceedings{mertzios_et_al:LIPIcs.MFCS.2021.75,
  author =	{Mertzios, George B. and Molter, Hendrik and Renken, Malte and Spirakis, Paul G. and Zschoche, Philipp},
  title =	{{The Complexity of Transitively Orienting Temporal Graphs}},
  booktitle =	{46th International Symposium on Mathematical Foundations of Computer Science (MFCS 2021)},
  pages =	{75:1--75:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-201-3},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{202},
  editor =	{Bonchi, Filippo and Puglisi, Simon J.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2021.75},
  URN =		{urn:nbn:de:0030-drops-145157},
  doi =		{10.4230/LIPIcs.MFCS.2021.75},
  annote =	{Keywords: Temporal graph, transitive orientation, transitive closure, polynomial-time algorithm, NP-hardness, satisfiability}
}
Document
Exact and Approximate Algorithms for Computing a Second Hamiltonian Cycle

Authors: Argyrios Deligkas, George B. Mertzios, Paul G. Spirakis, and Viktor Zamaraev

Published in: LIPIcs, Volume 170, 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)


Abstract
In this paper we consider the following total functional problem: Given a cubic Hamiltonian graph G and a Hamiltonian cycle C₀ of G, how can we compute a second Hamiltonian cycle C₁ ≠ C₀ of G? Cedric Smith and William Tutte proved in 1946, using a non-constructive parity argument, that such a second Hamiltonian cycle always exists. Our main result is a deterministic algorithm which computes the second Hamiltonian cycle in O(n⋅2^0.299862744n) = O(1.23103ⁿ) time and in linear space, thus improving the state of the art running time of O*(2^0.3n) = O(1.2312ⁿ) for solving this problem (among deterministic algorithms running in polynomial space). Whenever the input graph G does not contain any induced cycle C₆ on 6 vertices, the running time becomes O(n⋅ 2^0.2971925n) = O(1.22876ⁿ). Our algorithm is based on a fundamental structural property of Thomason’s lollipop algorithm, which we prove here for the first time. In the direction of approximating the length of a second cycle in a (not necessarily cubic) Hamiltonian graph G with a given Hamiltonian cycle C₀ (where we may not have guarantees on the existence of a second Hamiltonian cycle), we provide a linear-time algorithm computing a second cycle with length at least n - 4α (√n+2α)+8, where α = (Δ-2)/(δ-2) and δ,Δ are the minimum and the maximum degree of the graph, respectively. This approximation result also improves the state of the art.

Cite as

Argyrios Deligkas, George B. Mertzios, Paul G. Spirakis, and Viktor Zamaraev. Exact and Approximate Algorithms for Computing a Second Hamiltonian Cycle. In 45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 170, pp. 27:1-27:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)


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@InProceedings{deligkas_et_al:LIPIcs.MFCS.2020.27,
  author =	{Deligkas, Argyrios and Mertzios, George B. and Spirakis, Paul G. and Zamaraev, Viktor},
  title =	{{Exact and Approximate Algorithms for Computing a Second Hamiltonian Cycle}},
  booktitle =	{45th International Symposium on Mathematical Foundations of Computer Science (MFCS 2020)},
  pages =	{27:1--27:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-159-7},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{170},
  editor =	{Esparza, Javier and Kr\'{a}l', Daniel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2020.27},
  URN =		{urn:nbn:de:0030-drops-126953},
  doi =		{10.4230/LIPIcs.MFCS.2020.27},
  annote =	{Keywords: Hamiltonian cycle, cubic graph, exact algorithm, approximation algorithm}
}
Document
Crystal Structure Prediction via Oblivious Local Search

Authors: Dmytro Antypov, Argyrios Deligkas, Vladimir Gusev, Matthew J. Rosseinsky, Paul G. Spirakis, and Michail Theofilatos

Published in: LIPIcs, Volume 160, 18th International Symposium on Experimental Algorithms (SEA 2020)


Abstract
We study Crystal Structure Prediction, one of the major problems in computational chemistry. This is essentially a continuous optimization problem, where many different, simple and sophisticated, methods have been proposed and applied. The simple searching techniques are easy to understand, usually easy to implement, but they can be slow in practice. On the other hand, the more sophisticated approaches perform well in general, however almost all of them have a large number of parameters that require fine tuning and, in the majority of the cases, chemical expertise is needed in order to properly set them up. In addition, due to the chemical expertise involved in the parameter-tuning, these approaches can be biased towards previously-known crystal structures. Our contribution is twofold. Firstly, we formalize the Crystal Structure Prediction problem, alongside several other intermediate problems, from a theoretical computer science perspective. Secondly, we propose an oblivious algorithm for Crystal Structure Prediction that is based on local search. Oblivious means that our algorithm requires minimal knowledge about the composition we are trying to compute a crystal structure for. In addition, our algorithm can be used as an intermediate step by any method. Our experiments show that our algorithms outperform the standard basin hopping, a well studied algorithm for the problem.

Cite as

Dmytro Antypov, Argyrios Deligkas, Vladimir Gusev, Matthew J. Rosseinsky, Paul G. Spirakis, and Michail Theofilatos. Crystal Structure Prediction via Oblivious Local Search. In 18th International Symposium on Experimental Algorithms (SEA 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 160, pp. 21:1-21:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)


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@InProceedings{antypov_et_al:LIPIcs.SEA.2020.21,
  author =	{Antypov, Dmytro and Deligkas, Argyrios and Gusev, Vladimir and Rosseinsky, Matthew J. and Spirakis, Paul G. and Theofilatos, Michail},
  title =	{{Crystal Structure Prediction via Oblivious Local Search}},
  booktitle =	{18th International Symposium on Experimental Algorithms (SEA 2020)},
  pages =	{21:1--21:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-148-1},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{160},
  editor =	{Faro, Simone and Cantone, Domenico},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2020.21},
  URN =		{urn:nbn:de:0030-drops-120950},
  doi =		{10.4230/LIPIcs.SEA.2020.21},
  annote =	{Keywords: crystal structure prediction, local search, combinatorial neighborhood}
}
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